SRR10992579 - Copris incertus

Basic Information

Run: SRR10992579

Assay Type: AMPLICON

Biosample: SAMN13928304

Bytes: 130132964

Center Name: INSTITUTO DE ECOLOGIA A.C.

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJNA603992

Geographic Information

Country: Mexico

Continent: North America

Location Name: Mexico:Veracruz

Latitude/Longitude: 19.5312 N 96.9159 W

Sample Information

Host: Copris incertus

Isolation: -

Biosample Model: -

Collection Date: 2018-08-31

Host Sex: -

Environmental Information

Download Files

Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA

Run ID File Size

SRR10992579

124.1 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 273

Chemoheterotrophy

Aerobic_Chemoheterotrophy 234

Aerobic_Chemoheterotrophy

Aromatic_Compound_Degradation 39

Aromatic_Compound_Degradation

Nitrate_Reduction 34

Nitrate_Reduction

Fermentation 32

Fermentation

Nitrogen_Respiration 29

Nitrogen_Respiration

Nitrate_Respiration 28

Nitrate_Respiration

Human_Associated 22

Human_Associated

Animal_Parasites_Or_Symbionts 22

Animal_Parasites_Or_Symbionts

Human_Pathogens_All 20

Human_Pathogens_All

Predatory_Or_Exoparasitic 19

Predatory_Or_Exoparasitic

Ureolysis 14

Ureolysis

Methylotrophy 11

Methylotrophy

Methanol_Oxidation 10

Methanol_Oxidation

Nitrite_Respiration 10

Nitrite_Respiration

Nitrate_Denitrification 7

Nitrate_Denitrification

Nitrite_Denitrification 7

Nitrite_Denitrification

Denitrification 7

Denitrification

Nitrogen_Fixation 7

Nitrogen_Fixation

Respiration_Of_Sulfur_Compounds 4

Respiration_Of_Sulfur_Compounds

Dark_Hydrogen_Oxidation 4

Dark_Hydrogen_Oxidation

Dark_Oxidation_Of_Sulfur_Compounds 4

Dark_Oxidation_Of_Sulfur_Compounds

Thiosulfate_Respiration 3

Thiosulfate_Respiration

Photoheterotrophy 3

Photoheterotrophy

Phototrophy 3

Phototrophy

Nitrous_Oxide_Denitrification 2

Nitrous_Oxide_Denitrification

Dark_Sulfide_Oxidation 2

Dark_Sulfide_Oxidation

Dark_Sulfur_Oxidation 2

Dark_Sulfur_Oxidation

Dark_Thiosulfate_Oxidation 2

Dark_Thiosulfate_Oxidation

Human_Gut 2

Human_Gut

Mammal_Gut 2

Mammal_Gut

Hydrocarbon_Degradation 2

Hydrocarbon_Degradation

Intracellular_Parasites 2

Intracellular_Parasites

Nonphotosynthetic_Cyanobacteria 2

Nonphotosynthetic_Cyanobacteria

Reductive_Acetogenesis 2

Reductive_Acetogenesis

Methanotrophy 1

Methanotrophy

Sulfate_Respiration 1

Sulfate_Respiration

Sulfur_Respiration 1

Sulfur_Respiration

Arsenate_Respiration 1

Arsenate_Respiration

Dissimilatory_Arsenate_Reduction 1

Dissimilatory_Arsenate_Reduction

Anammox 1

Anammox

Aliphatic_Non_Methane_Hydrocarbon_Degradation 1

Aliphatic_Non_Methane_Hydrocarbon_Degradation

Dark_Iron_Oxidation 1

Dark_Iron_Oxidation

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