SRR10992576 - Copris incertus

Basic Information

Run: SRR10992576

Assay Type: AMPLICON

Biosample: SAMN13928315

Bytes: 104611871

Center Name: INSTITUTO DE ECOLOGIA A.C.

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJNA603992

Geographic Information

Country: Mexico

Continent: North America

Location Name: Mexico:Veracruz

Latitude/Longitude: 19.5312 N 96.9159 W

Sample Information

Host: Copris incertus

Isolation: -

Biosample Model: -

Collection Date: 2018-08-31

Host Sex: -

Environmental Information

Download Files

Analysis Files

OTU Table

Operational Taxonomic Unit table

Download

OTU Sequences

FASTA file of OTU sequences

Download

FAPROTAX Report

Functional annotation of Amplicon

Download

VSEARCH Taxon

VSEARCH taxonomic composition classification

Download

QIIME Taxon

QIIME2 taxonomic composition classification

Download

Raw Sequencing Files

Direct download from NCBI SRA

Run ID File Size

SRR10992576

99.8 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 51

Chemoheterotrophy

Aerobic_Chemoheterotrophy 28

Aerobic_Chemoheterotrophy

Fermentation 21

Fermentation

Nitrate_Reduction 7

Nitrate_Reduction

Nitrate_Respiration 6

Nitrate_Respiration

Nitrogen_Respiration 6

Nitrogen_Respiration

Human_Associated 5

Human_Associated

Animal_Parasites_Or_Symbionts 5

Animal_Parasites_Or_Symbionts

Aromatic_Compound_Degradation 5

Aromatic_Compound_Degradation

Human_Pathogens_All 4

Human_Pathogens_All

Dark_Hydrogen_Oxidation 3

Dark_Hydrogen_Oxidation

Sulfate_Respiration 2

Sulfate_Respiration

Respiration_Of_Sulfur_Compounds 2

Respiration_Of_Sulfur_Compounds

Nitrate_Denitrification 2

Nitrate_Denitrification

Nitrite_Denitrification 2

Nitrite_Denitrification

Denitrification 2

Denitrification

Nitrite_Respiration 2

Nitrite_Respiration

Methanol_Oxidation 1

Methanol_Oxidation

Methylotrophy 1

Methylotrophy

Sulfite_Respiration 1

Sulfite_Respiration

Cellulolysis 1

Cellulolysis

Manganese_Respiration 1

Manganese_Respiration

Human_Pathogens_Nosocomia 1

Human_Pathogens_Nosocomia

Human_Gut 1

Human_Gut

Mammal_Gut 1

Mammal_Gut

Iron_Respiration 1

Iron_Respiration

Photosynthetic_Cyanobacteria 1

Photosynthetic_Cyanobacteria

Oxygenic_Photoautotrophy 1

Oxygenic_Photoautotrophy

Photoautotrophy 1

Photoautotrophy

Phototrophy 1

Phototrophy

Back to Amplicons List

Back to Table