SRR10992574 - Copris incertus

Basic Information

Run: SRR10992574

Assay Type: AMPLICON

Biosample: SAMN13928317

Bytes: 118951048

Center Name: INSTITUTO DE ECOLOGIA A.C.

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJNA603992

Geographic Information

Country: Mexico

Continent: North America

Location Name: Mexico:Veracruz

Latitude/Longitude: 19.5312 N 96.9159 W

Sample Information

Host: Copris incertus

Isolation: -

Biosample Model: -

Collection Date: 2018-08-31

Host Sex: -

Environmental Information

Download Files

Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA

Run ID File Size

SRR10992574

113.4 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 259

Chemoheterotrophy

Aerobic_Chemoheterotrophy 223

Aerobic_Chemoheterotrophy

Nitrate_Reduction 42

Nitrate_Reduction

Nitrate_Respiration 34

Nitrate_Respiration

Nitrogen_Respiration 34

Nitrogen_Respiration

Aromatic_Compound_Degradation 33

Aromatic_Compound_Degradation

Fermentation 25

Fermentation

Human_Associated 21

Human_Associated

Animal_Parasites_Or_Symbionts 21

Animal_Parasites_Or_Symbionts

Human_Pathogens_All 20

Human_Pathogens_All

Predatory_Or_Exoparasitic 16

Predatory_Or_Exoparasitic

Ureolysis 15

Ureolysis

Nitrite_Respiration 12

Nitrite_Respiration

Methylotrophy 10

Methylotrophy

Methanol_Oxidation 9

Methanol_Oxidation

Nitrate_Denitrification 9

Nitrate_Denitrification

Nitrite_Denitrification 9

Nitrite_Denitrification

Denitrification 9

Denitrification

Nitrogen_Fixation 9

Nitrogen_Fixation

Nonphotosynthetic_Cyanobacteria 5

Nonphotosynthetic_Cyanobacteria

Dark_Oxidation_Of_Sulfur_Compounds 4

Dark_Oxidation_Of_Sulfur_Compounds

Phototrophy 4

Phototrophy

Respiration_Of_Sulfur_Compounds 3

Respiration_Of_Sulfur_Compounds

Dark_Hydrogen_Oxidation 3

Dark_Hydrogen_Oxidation

Dark_Sulfide_Oxidation 3

Dark_Sulfide_Oxidation

Dark_Sulfur_Oxidation 3

Dark_Sulfur_Oxidation

Dark_Thiosulfate_Oxidation 3

Dark_Thiosulfate_Oxidation

Sulfate_Respiration 2

Sulfate_Respiration

Nitrous_Oxide_Denitrification 2

Nitrous_Oxide_Denitrification

Intracellular_Parasites 2

Intracellular_Parasites

Photosynthetic_Cyanobacteria 2

Photosynthetic_Cyanobacteria

Oxygenic_Photoautotrophy 2

Oxygenic_Photoautotrophy

Photoautotrophy 2

Photoautotrophy

Photoheterotrophy 2

Photoheterotrophy

Methanotrophy 1

Methanotrophy

Thiosulfate_Respiration 1

Thiosulfate_Respiration

Arsenate_Respiration 1

Arsenate_Respiration

Dissimilatory_Arsenate_Reduction 1

Dissimilatory_Arsenate_Reduction

Cellulolysis 1

Cellulolysis

Human_Gut 1

Human_Gut

Mammal_Gut 1

Mammal_Gut

Hydrocarbon_Degradation 1

Hydrocarbon_Degradation

Dark_Iron_Oxidation 1

Dark_Iron_Oxidation

Iron_Respiration 1

Iron_Respiration

Reductive_Acetogenesis 1

Reductive_Acetogenesis

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