SRR10992573 - Copris incertus

Basic Information

Run: SRR10992573

Assay Type: AMPLICON

Biosample: SAMN13928318

Bytes: 109442934

Center Name: INSTITUTO DE ECOLOGIA A.C.

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJNA603992

Geographic Information

Country: Mexico

Continent: North America

Location Name: Mexico:Veracruz

Latitude/Longitude: 19.5312 N 96.9159 W

Sample Information

Host: Copris incertus

Isolation: -

Biosample Model: -

Collection Date: 2018-08-31

Host Sex: -

Environmental Information

Download Files

Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA

Run ID File Size

SRR10992573

104.4 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 116

Chemoheterotrophy

Aerobic_Chemoheterotrophy 75

Aerobic_Chemoheterotrophy

Fermentation 35

Fermentation

Aromatic_Compound_Degradation 15

Aromatic_Compound_Degradation

Nitrate_Reduction 11

Nitrate_Reduction

Nitrate_Respiration 10

Nitrate_Respiration

Nitrogen_Respiration 10

Nitrogen_Respiration

Human_Associated 6

Human_Associated

Animal_Parasites_Or_Symbionts 6

Animal_Parasites_Or_Symbionts

Methylotrophy 5

Methylotrophy

Human_Pathogens_All 5

Human_Pathogens_All

Ureolysis 5

Ureolysis

Methanol_Oxidation 4

Methanol_Oxidation

Nitrogen_Fixation 4

Nitrogen_Fixation

Dark_Hydrogen_Oxidation 3

Dark_Hydrogen_Oxidation

Respiration_Of_Sulfur_Compounds 2

Respiration_Of_Sulfur_Compounds

Nitrite_Respiration 2

Nitrite_Respiration

Dark_Oxidation_Of_Sulfur_Compounds 2

Dark_Oxidation_Of_Sulfur_Compounds

Hydrocarbon_Degradation 2

Hydrocarbon_Degradation

Methanotrophy 1

Methanotrophy

Methanogenesis_By_Co2_Reduction_With_H2 1

Methanogenesis_By_Co2_Reduction_With_H2

Hydrogenotrophic_Methanogenesis 1

Hydrogenotrophic_Methanogenesis

Methanogenesis 1

Methanogenesis

Sulfate_Respiration 1

Sulfate_Respiration

Dark_Sulfite_Oxidation 1

Dark_Sulfite_Oxidation

Thiosulfate_Respiration 1

Thiosulfate_Respiration

Nitrate_Denitrification 1

Nitrate_Denitrification

Nitrite_Denitrification 1

Nitrite_Denitrification

Denitrification 1

Denitrification

Cellulolysis 1

Cellulolysis

Dark_Sulfur_Oxidation 1

Dark_Sulfur_Oxidation

Manganese_Respiration 1

Manganese_Respiration

Human_Pathogens_Nosocomia 1

Human_Pathogens_Nosocomia

Human_Gut 1

Human_Gut

Mammal_Gut 1

Mammal_Gut

Plant_Pathogen 1

Plant_Pathogen

Aliphatic_Non_Methane_Hydrocarbon_Degradation 1

Aliphatic_Non_Methane_Hydrocarbon_Degradation

Dark_Iron_Oxidation 1

Dark_Iron_Oxidation

Iron_Respiration 1

Iron_Respiration

Intracellular_Parasites 1

Intracellular_Parasites

Predatory_Or_Exoparasitic 1

Predatory_Or_Exoparasitic

Reductive_Acetogenesis 1

Reductive_Acetogenesis

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