SRR10992571 - Copris incertus

Basic Information

Run: SRR10992571

Assay Type: AMPLICON

Biosample: SAMN13928320

Bytes: 111155866

Center Name: INSTITUTO DE ECOLOGIA A.C.

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJNA603992

Geographic Information

Country: Mexico

Continent: North America

Location Name: Mexico:Veracruz

Latitude/Longitude: 19.5312 N 96.9159 W

Sample Information

Host: Copris incertus

Isolation: -

Biosample Model: -

Collection Date: 2018-08-31

Host Sex: -

Environmental Information

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Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA
Run ID File Size
SRR10992571
106.0 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 49
Aerobic_Chemoheterotrophy 25
Fermentation 21
Aromatic_Compound_Degradation 5
Animal_Parasites_Or_Symbionts 4
Nitrate_Reduction 4
Human_Pathogens_All 3
Human_Associated 3
Respiration_Of_Sulfur_Compounds 2
Nitrate_Respiration 2
Nitrogen_Respiration 2
Sulfate_Respiration 1
Sulfur_Respiration 1
Sulfite_Respiration 1
Dark_Hydrogen_Oxidation 1
Nitrogen_Fixation 1
Human_Pathogens_Nosocomia 1
Aliphatic_Non_Methane_Hydrocarbon_Degradation 1
Hydrocarbon_Degradation 1
Iron_Respiration 1
Ureolysis 1
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