SRR10992570 - Copris incertus

Basic Information

Run: SRR10992570

Assay Type: AMPLICON

Biosample: SAMN13928321

Bytes: 123088782

Center Name: INSTITUTO DE ECOLOGIA A.C.

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJNA603992

Geographic Information

Country: Mexico

Continent: North America

Location Name: Mexico:Veracruz

Latitude/Longitude: 19.5312 N 96.9159 W

Sample Information

Host: Copris incertus

Isolation: -

Biosample Model: -

Collection Date: 2018-08-31

Host Sex: -

Environmental Information

Download Files

Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA

Run ID File Size

SRR10992570

117.4 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 289

Chemoheterotrophy

Aerobic_Chemoheterotrophy 223

Aerobic_Chemoheterotrophy

Aromatic_Compound_Degradation 60

Aromatic_Compound_Degradation

Fermentation 53

Fermentation

Nitrate_Reduction 32

Nitrate_Reduction

Nitrate_Respiration 27

Nitrate_Respiration

Nitrogen_Respiration 27

Nitrogen_Respiration

Human_Associated 16

Human_Associated

Animal_Parasites_Or_Symbionts 16

Animal_Parasites_Or_Symbionts

Human_Pathogens_All 14

Human_Pathogens_All

Methylotrophy 11

Methylotrophy

Nitrite_Respiration 11

Nitrite_Respiration

Methanol_Oxidation 10

Methanol_Oxidation

Dark_Hydrogen_Oxidation 10

Dark_Hydrogen_Oxidation

Predatory_Or_Exoparasitic 10

Predatory_Or_Exoparasitic

Nitrate_Denitrification 9

Nitrate_Denitrification

Nitrite_Denitrification 9

Nitrite_Denitrification

Denitrification 9

Denitrification

Ureolysis 9

Ureolysis

Nitrogen_Fixation 7

Nitrogen_Fixation

Phototrophy 5

Phototrophy

Respiration_Of_Sulfur_Compounds 4

Respiration_Of_Sulfur_Compounds

Photoheterotrophy 4

Photoheterotrophy

Dark_Oxidation_Of_Sulfur_Compounds 3

Dark_Oxidation_Of_Sulfur_Compounds

Sulfate_Respiration 2

Sulfate_Respiration

Thiosulfate_Respiration 2

Thiosulfate_Respiration

Cellulolysis 2

Cellulolysis

Human_Gut 2

Human_Gut

Mammal_Gut 2

Mammal_Gut

Hydrocarbon_Degradation 2

Hydrocarbon_Degradation

Reductive_Acetogenesis 2

Reductive_Acetogenesis

Methanotrophy 1

Methanotrophy

Methanogenesis_By_Co2_Reduction_With_H2 1

Methanogenesis_By_Co2_Reduction_With_H2

Hydrogenotrophic_Methanogenesis 1

Hydrogenotrophic_Methanogenesis

Methanogenesis 1

Methanogenesis

Aerobic_Nitrite_Oxidation 1

Aerobic_Nitrite_Oxidation

Nitrification 1

Nitrification

Sulfur_Respiration 1

Sulfur_Respiration

Arsenate_Respiration 1

Arsenate_Respiration

Dissimilatory_Arsenate_Reduction 1

Dissimilatory_Arsenate_Reduction

Nitrate_Ammonification 1

Nitrate_Ammonification

Nitrite_Ammonification 1

Nitrite_Ammonification

Xylanolysis 1

Xylanolysis

Dark_Sulfide_Oxidation 1

Dark_Sulfide_Oxidation

Dark_Sulfur_Oxidation 1

Dark_Sulfur_Oxidation

Dark_Thiosulfate_Oxidation 1

Dark_Thiosulfate_Oxidation

Aliphatic_Non_Methane_Hydrocarbon_Degradation 1

Aliphatic_Non_Methane_Hydrocarbon_Degradation

Fumarate_Respiration 1

Fumarate_Respiration

Intracellular_Parasites 1

Intracellular_Parasites

Nonphotosynthetic_Cyanobacteria 1

Nonphotosynthetic_Cyanobacteria

Photosynthetic_Cyanobacteria 1

Photosynthetic_Cyanobacteria

Oxygenic_Photoautotrophy 1

Oxygenic_Photoautotrophy

Photoautotrophy 1

Photoautotrophy

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