SRR10992565 - Copris incertus

Basic Information

Run: SRR10992565

Assay Type: AMPLICON

Biosample: SAMN13928310

Bytes: 124249469

Center Name: INSTITUTO DE ECOLOGIA A.C.

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJNA603992

Geographic Information

Country: Mexico

Continent: North America

Location Name: Mexico:Veracruz

Latitude/Longitude: 19.5312 N 96.9159 W

Sample Information

Host: Copris incertus

Isolation: -

Biosample Model: -

Collection Date: 2018-08-31

Host Sex: -

Environmental Information

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Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA
Run ID File Size
SRR10992565
118.5 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 144
Fermentation 101
Aerobic_Chemoheterotrophy 45
Aromatic_Compound_Degradation 12
Nitrate_Respiration 7
Nitrate_Reduction 7
Nitrogen_Respiration 7
Dark_Hydrogen_Oxidation 4
Nitrite_Respiration 4
Methanol_Oxidation 3
Methylotrophy 3
Nitrate_Denitrification 3
Nitrite_Denitrification 3
Denitrification 3
Nitrogen_Fixation 2
Human_Pathogens_All 2
Human_Associated 2
Animal_Parasites_Or_Symbionts 2
Sulfate_Respiration 1
Respiration_Of_Sulfur_Compounds 1
Predatory_Or_Exoparasitic 1
Ureolysis 1
Reductive_Acetogenesis 1
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