SRR10992564 - Copris incertus

Basic Information

Run: SRR10992564

Assay Type: AMPLICON

Biosample: SAMN13928311

Bytes: 131712636

Center Name: INSTITUTO DE ECOLOGIA A.C.

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJNA603992

Geographic Information

Country: Mexico

Continent: North America

Location Name: Mexico:Veracruz

Latitude/Longitude: 19.5312 N 96.9159 W

Sample Information

Host: Copris incertus

Isolation: -

Biosample Model: -

Collection Date: 2018-08-31

Host Sex: -

Environmental Information

Download Files

Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA

Run ID File Size

SRR10992564

125.6 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 185

Chemoheterotrophy

Aerobic_Chemoheterotrophy 141

Aerobic_Chemoheterotrophy

Fermentation 37

Fermentation

Aromatic_Compound_Degradation 24

Aromatic_Compound_Degradation

Nitrate_Reduction 21

Nitrate_Reduction

Nitrate_Respiration 18

Nitrate_Respiration

Nitrogen_Respiration 18

Nitrogen_Respiration

Animal_Parasites_Or_Symbionts 14

Animal_Parasites_Or_Symbionts

Human_Associated 13

Human_Associated

Ureolysis 13

Ureolysis

Human_Pathogens_All 11

Human_Pathogens_All

Nitrogen_Fixation 8

Nitrogen_Fixation

Methanol_Oxidation 7

Methanol_Oxidation

Methylotrophy 7

Methylotrophy

Predatory_Or_Exoparasitic 7

Predatory_Or_Exoparasitic

Nitrite_Respiration 5

Nitrite_Respiration

Phototrophy 4

Phototrophy

Respiration_Of_Sulfur_Compounds 3

Respiration_Of_Sulfur_Compounds

Nitrate_Denitrification 3

Nitrate_Denitrification

Nitrite_Denitrification 3

Nitrite_Denitrification

Denitrification 3

Denitrification

Dark_Hydrogen_Oxidation 3

Dark_Hydrogen_Oxidation

Thiosulfate_Respiration 2

Thiosulfate_Respiration

Dark_Oxidation_Of_Sulfur_Compounds 2

Dark_Oxidation_Of_Sulfur_Compounds

Human_Gut 2

Human_Gut

Mammal_Gut 2

Mammal_Gut

Fumarate_Respiration 2

Fumarate_Respiration

Photosynthetic_Cyanobacteria 2

Photosynthetic_Cyanobacteria

Oxygenic_Photoautotrophy 2

Oxygenic_Photoautotrophy

Photoautotrophy 2

Photoautotrophy

Photoheterotrophy 2

Photoheterotrophy

Methanogenesis_By_Co2_Reduction_With_H2 1

Methanogenesis_By_Co2_Reduction_With_H2

Hydrogenotrophic_Methanogenesis 1

Hydrogenotrophic_Methanogenesis

Methanogenesis 1

Methanogenesis

Sulfate_Respiration 1

Sulfate_Respiration

Sulfur_Respiration 1

Sulfur_Respiration

Sulfite_Respiration 1

Sulfite_Respiration

Arsenate_Respiration 1

Arsenate_Respiration

Dissimilatory_Arsenate_Reduction 1

Dissimilatory_Arsenate_Reduction

Nitrous_Oxide_Denitrification 1

Nitrous_Oxide_Denitrification

Nitrate_Ammonification 1

Nitrate_Ammonification

Nitrite_Ammonification 1

Nitrite_Ammonification

Dark_Sulfide_Oxidation 1

Dark_Sulfide_Oxidation

Dark_Sulfur_Oxidation 1

Dark_Sulfur_Oxidation

Dark_Thiosulfate_Oxidation 1

Dark_Thiosulfate_Oxidation

Aliphatic_Non_Methane_Hydrocarbon_Degradation 1

Aliphatic_Non_Methane_Hydrocarbon_Degradation

Hydrocarbon_Degradation 1

Hydrocarbon_Degradation

Dark_Iron_Oxidation 1

Dark_Iron_Oxidation

Iron_Respiration 1

Iron_Respiration

Intracellular_Parasites 1

Intracellular_Parasites

Nonphotosynthetic_Cyanobacteria 1

Nonphotosynthetic_Cyanobacteria

Reductive_Acetogenesis 1

Reductive_Acetogenesis

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