SRR10992562 - Copris incertus

Basic Information

Run: SRR10992562

Assay Type: AMPLICON

Biosample: SAMN13928313

Bytes: 119050805

Center Name: INSTITUTO DE ECOLOGIA A.C.

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJNA603992

Geographic Information

Country: Mexico

Continent: North America

Location Name: Mexico:Veracruz

Latitude/Longitude: 19.5312 N 96.9159 W

Sample Information

Host: Copris incertus

Isolation: -

Biosample Model: -

Collection Date: 2018-08-31

Host Sex: -

Environmental Information

Download Files

Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA

Run ID File Size

SRR10992562

113.5 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 126

Chemoheterotrophy

Fermentation 63

Fermentation

Aerobic_Chemoheterotrophy 61

Aerobic_Chemoheterotrophy

Aromatic_Compound_Degradation 11

Aromatic_Compound_Degradation

Ureolysis 6

Ureolysis

Nitrate_Reduction 5

Nitrate_Reduction

Methanol_Oxidation 3

Methanol_Oxidation

Methylotrophy 3

Methylotrophy

Human_Pathogens_All 3

Human_Pathogens_All

Human_Associated 3

Human_Associated

Animal_Parasites_Or_Symbionts 3

Animal_Parasites_Or_Symbionts

Nitrate_Respiration 3

Nitrate_Respiration

Nitrogen_Respiration 3

Nitrogen_Respiration

Dark_Hydrogen_Oxidation 2

Dark_Hydrogen_Oxidation

Methanogenesis_By_Co2_Reduction_With_H2 1

Methanogenesis_By_Co2_Reduction_With_H2

Hydrogenotrophic_Methanogenesis 1

Hydrogenotrophic_Methanogenesis

Methanogenesis 1

Methanogenesis

Dark_Sulfite_Oxidation 1

Dark_Sulfite_Oxidation

Nitrate_Denitrification 1

Nitrate_Denitrification

Nitrite_Denitrification 1

Nitrite_Denitrification

Denitrification 1

Denitrification

Nitrogen_Fixation 1

Nitrogen_Fixation

Nitrite_Respiration 1

Nitrite_Respiration

Dark_Sulfur_Oxidation 1

Dark_Sulfur_Oxidation

Dark_Oxidation_Of_Sulfur_Compounds 1

Dark_Oxidation_Of_Sulfur_Compounds

Human_Pathogens_Nosocomia 1

Human_Pathogens_Nosocomia

Aliphatic_Non_Methane_Hydrocarbon_Degradation 1

Aliphatic_Non_Methane_Hydrocarbon_Degradation

Hydrocarbon_Degradation 1

Hydrocarbon_Degradation

Intracellular_Parasites 1

Intracellular_Parasites

Predatory_Or_Exoparasitic 1

Predatory_Or_Exoparasitic

Nonphotosynthetic_Cyanobacteria 1

Nonphotosynthetic_Cyanobacteria

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