SRR10882649 - None

Basic Information

Run: SRR10882649

Assay Type: AMPLICON

Biosample: SAMN13841195

Bytes: 141384028

Center Name: CENTRAL SILK BOARD

Classification: 16S

Sequencing Information

Instrument: Illumina HiSeq 2500

Library Layout: PAIRED

Bioproject: PRJNA601058

Geographic Information

Country: India

Continent: Asia

Location Name: India: Bastar Chattisgarh

Latitude/Longitude: 19.10 N 81.95 E

Sample Information

Host: -

Isolation: -

Biosample Model: -

Collection Date: -

Host Sex: -

Environmental Information

Download Files

Analysis Files

OTU Table

Operational Taxonomic Unit table

Download
OTU Sequences

FASTA file of OTU sequences

Download
FAPROTAX Report

Functional annotation of Amplicon

Download
VSEARCH Taxon

VSEARCH taxonomic composition classification

Download
QIIME Taxon

QIIME2 taxonomic composition classification

Download

Raw Sequencing Files

Direct download from NCBI SRA
Run ID File Size
SRR10882649
134.8 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 132
Aerobic_Chemoheterotrophy 101
Nitrate_Reduction 28
Animal_Parasites_Or_Symbionts 22
Fermentation 21
Human_Associated 20
Human_Pathogens_All 17
Aromatic_Compound_Degradation 14
Nitrate_Respiration 14
Nitrogen_Respiration 14
Ureolysis 12
Methylotrophy 9
Methanol_Oxidation 8
Nitrogen_Fixation 5
Nitrate_Denitrification 4
Nitrite_Denitrification 4
Denitrification 4
Nitrite_Respiration 4
Human_Gut 4
Mammal_Gut 4
Hydrocarbon_Degradation 4
Dark_Hydrogen_Oxidation 3
Human_Pathogens_Nosocomia 3
Photoautotrophy 3
Phototrophy 3
Dark_Oxidation_Of_Sulfur_Compounds 2
Aliphatic_Non_Methane_Hydrocarbon_Degradation 2
Iron_Respiration 2
Nonphotosynthetic_Cyanobacteria 2
Photosynthetic_Cyanobacteria 2
Oxygenic_Photoautotrophy 2
Methanotrophy 1
Aerobic_Ammonia_Oxidation 1
Nitrification 1
Dark_Sulfide_Oxidation 1
Human_Pathogens_Septicemia 1
Human_Pathogens_Pneumonia 1
Aromatic_Hydrocarbon_Degradation 1
Dark_Iron_Oxidation 1
Fumarate_Respiration 1
Predatory_Or_Exoparasitic 1
Anoxygenic_Photoautotrophy_H2_Oxidizing 1
Anoxygenic_Photoautotrophy_S_Oxidizing 1
Anoxygenic_Photoautotrophy 1
Aerobic_Anoxygenic_Phototrophy 1
Photoheterotrophy 1
Back to Amplicons List
Back to Table