SRR10882605 - None

Basic Information

Run: SRR10882605

Assay Type: AMPLICON

Biosample: SAMN13840989

Bytes: 121734824

Center Name: CENTRAL SILK BOARD

Classification: 16S

Sequencing Information

Instrument: Illumina HiSeq 2500

Library Layout: PAIRED

Bioproject: PRJNA601046

Geographic Information

Country: India

Continent: Asia

Location Name: India: Sarath Baripada, Odisha

Latitude/Longitude: 21.93 N 86.75 E

Sample Information

Host: -

Isolation: -

Biosample Model: -

Collection Date: 2024-09-18

Host Sex: -

Environmental Information

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Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA
Run ID File Size
SRR10882605
116.1 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 138
Aerobic_Chemoheterotrophy 95
Fermentation 35
Nitrate_Reduction 26
Animal_Parasites_Or_Symbionts 23
Human_Associated 22
Aromatic_Compound_Degradation 19
Human_Pathogens_All 17
Nitrate_Respiration 11
Nitrogen_Respiration 11
Ureolysis 11
Methanol_Oxidation 7
Methylotrophy 7
Human_Gut 6
Mammal_Gut 6
Phototrophy 6
Photosynthetic_Cyanobacteria 5
Oxygenic_Photoautotrophy 5
Photoautotrophy 5
Aliphatic_Non_Methane_Hydrocarbon_Degradation 3
Hydrocarbon_Degradation 3
Aerobic_Ammonia_Oxidation 2
Nitrification 2
Sulfate_Respiration 2
Respiration_Of_Sulfur_Compounds 2
Nitrate_Denitrification 2
Nitrite_Denitrification 2
Denitrification 2
Dark_Hydrogen_Oxidation 2
Nitrogen_Fixation 2
Nitrite_Respiration 2
Nonphotosynthetic_Cyanobacteria 2
Dark_Oxidation_Of_Sulfur_Compounds 1
Invertebrate_Parasites 1
Human_Pathogens_Nosocomia 1
Intracellular_Parasites 1
Photoheterotrophy 1
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