SRR10835588 - Schistocerca gregaria

Basic Information

Run: SRR10835588

Assay Type: AMPLICON

Biosample: SAMN13735859

Bytes: 11449558

Center Name: TEL AVIV UNIVERSITY

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJNA598984

Geographic Information

Country: Israel

Continent: Asia

Location Name: Israel

Latitude/Longitude: 32.08 N 34.78 E

Sample Information

Host: Schistocerca gregaria

Isolation: -

Biosample Model: -

Collection Date: 2017-01-01

Host Sex: -

Environmental Information

Download Files

Analysis Files

OTU Table

Operational Taxonomic Unit table

Download
OTU Sequences

FASTA file of OTU sequences

Download
FAPROTAX Report

Functional annotation of Amplicon

Download
VSEARCH Taxon

VSEARCH taxonomic composition classification

Download
QIIME Taxon

QIIME2 taxonomic composition classification

Download

Raw Sequencing Files

Direct download from NCBI SRA
Run ID File Size
SRR10835588
10.9 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 38
Aerobic_Chemoheterotrophy 27
Animal_Parasites_Or_Symbionts 14
Fermentation 12
Human_Associated 12
Human_Gut 9
Mammal_Gut 9
Nitrate_Reduction 9
Aromatic_Compound_Degradation 6
Human_Pathogens_All 5
Methanol_Oxidation 4
Methylotrophy 4
Nitrate_Denitrification 4
Nitrite_Denitrification 4
Denitrification 4
Dark_Hydrogen_Oxidation 4
Nitrite_Respiration 4
Nitrate_Respiration 4
Nitrogen_Respiration 4
Human_Pathogens_Nosocomia 2
Human_Pathogens_Septicemia 1
Human_Pathogens_Pneumonia 1
Ureolysis 1
Back to Amplicons List
Back to Table