SRR10835587 - Schistocerca gregaria

Basic Information

Run: SRR10835587

Assay Type: AMPLICON

Biosample: SAMN13735860

Bytes: 10462730

Center Name: TEL AVIV UNIVERSITY

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJNA598984

Quality Control Information

Filter Percentage: 0.0

QC Average Length: -

Retained Reads: -

Geographic Information

Country: Israel

Continent: Asia

Location Name: Israel

Latitude/Longitude: 32.08 N 34.78 E

Sample Information

Host: Schistocerca gregaria

Isolation: -

Biosample Model: -

Collection Date: 2017-01-01

Host Sex: -

Environmental Information

Download Files

Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA

Run ID File Size

SRR10835587

10.0 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 32

Chemoheterotrophy

Aerobic_Chemoheterotrophy 20

Aerobic_Chemoheterotrophy

Nitrate_Reduction 9

Nitrate_Reduction

Aromatic_Compound_Degradation 6

Aromatic_Compound_Degradation

Hydrocarbon_Degradation 5

Hydrocarbon_Degradation

Nitrate_Respiration 5

Nitrate_Respiration

Nitrogen_Respiration 5

Nitrogen_Respiration

Methanol_Oxidation 4

Methanol_Oxidation

Methylotrophy 4

Methylotrophy

Nitrate_Denitrification 4

Nitrate_Denitrification

Nitrite_Denitrification 4

Nitrite_Denitrification

Denitrification 4

Denitrification

Dark_Hydrogen_Oxidation 4

Dark_Hydrogen_Oxidation

Nitrite_Respiration 4

Nitrite_Respiration

Fermentation 4

Fermentation

Human_Pathogens_All 2

Human_Pathogens_All

Human_Associated 2

Human_Associated

Animal_Parasites_Or_Symbionts 2

Animal_Parasites_Or_Symbionts

Photosynthetic_Cyanobacteria 2

Photosynthetic_Cyanobacteria

Oxygenic_Photoautotrophy 2

Oxygenic_Photoautotrophy

Photoautotrophy 2

Photoautotrophy

Phototrophy 2

Phototrophy

Human_Pathogens_Septicemia 1

Human_Pathogens_Septicemia

Human_Pathogens_Pneumonia 1

Human_Pathogens_Pneumonia

Human_Pathogens_Nosocomia 1

Human_Pathogens_Nosocomia

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