SRR10835464 - Schistocerca gregaria

Basic Information

Run: SRR10835464

Assay Type: AMPLICON

Biosample: SAMN13735764

Bytes: 8745109

Center Name: TEL AVIV UNIVERSITY

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJNA598984

Quality Control Information

Filter Percentage: 0.0

QC Average Length: -

Retained Reads: -

Geographic Information

Country: Israel

Continent: Asia

Location Name: Israel

Latitude/Longitude: 32.08 N 34.78 E

Sample Information

Host: Schistocerca gregaria

Isolation: -

Biosample Model: -

Collection Date: 2017-01-01

Host Sex: -

Environmental Information

Download Files

Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA

Run ID File Size

SRR10835464

8.3 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 41

Chemoheterotrophy

Aerobic_Chemoheterotrophy 28

Aerobic_Chemoheterotrophy

Nitrate_Reduction 13

Nitrate_Reduction

Animal_Parasites_Or_Symbionts 8

Animal_Parasites_Or_Symbionts

Methanol_Oxidation 7

Methanol_Oxidation

Methylotrophy 7

Methylotrophy

Fermentation 7

Fermentation

Human_Pathogens_All 7

Human_Pathogens_All

Human_Associated 7

Human_Associated

Nitrate_Respiration 7

Nitrate_Respiration

Nitrogen_Respiration 7

Nitrogen_Respiration

Aromatic_Compound_Degradation 5

Aromatic_Compound_Degradation

Ureolysis 5

Ureolysis

Nitrate_Denitrification 2

Nitrate_Denitrification

Nitrite_Denitrification 2

Nitrite_Denitrification

Denitrification 2

Denitrification

Dark_Hydrogen_Oxidation 2

Dark_Hydrogen_Oxidation

Nitrite_Respiration 2

Nitrite_Respiration

Human_Pathogens_Septicemia 2

Human_Pathogens_Septicemia

Human_Pathogens_Pneumonia 2

Human_Pathogens_Pneumonia

Human_Pathogens_Nosocomia 2

Human_Pathogens_Nosocomia

Nitrogen_Fixation 1

Nitrogen_Fixation

Dark_Oxidation_Of_Sulfur_Compounds 1

Dark_Oxidation_Of_Sulfur_Compounds

Hydrocarbon_Degradation 1

Hydrocarbon_Degradation

Intracellular_Parasites 1

Intracellular_Parasites

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