SRR10835286 - Schistocerca gregaria

Basic Information

Run: SRR10835286

Assay Type: AMPLICON

Biosample: SAMN13735788

Bytes: 11121936

Center Name: TEL AVIV UNIVERSITY

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJNA598984

Geographic Information

Country: Israel

Continent: Asia

Location Name: Israel

Latitude/Longitude: 32.08 N 34.78 E

Sample Information

Host: Schistocerca gregaria

Isolation: -

Biosample Model: -

Collection Date: 2017-01-01

Host Sex: -

Environmental Information

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Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA
Run ID File Size
SRR10835286
10.6 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 44
Aerobic_Chemoheterotrophy 34
Fermentation 10
Animal_Parasites_Or_Symbionts 10
Human_Associated 9
Aromatic_Compound_Degradation 9
Human_Pathogens_All 8
Nitrate_Reduction 8
Nitrate_Respiration 5
Nitrogen_Respiration 5
Human_Pathogens_Septicemia 4
Methanol_Oxidation 3
Methylotrophy 3
Nitrate_Denitrification 3
Nitrite_Denitrification 3
Denitrification 3
Dark_Hydrogen_Oxidation 3
Nitrite_Respiration 3
Human_Pathogens_Pneumonia 3
Human_Pathogens_Nosocomia 3
Hydrocarbon_Degradation 2
Nitrogen_Fixation 1
Human_Pathogens_Meningitis 1
Human_Gut 1
Mammal_Gut 1
Plant_Pathogen 1
Aliphatic_Non_Methane_Hydrocarbon_Degradation 1
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