SRR10725991 - Bombus modestus

Basic Information

Run: SRR10725991

Assay Type: AMPLICON

Biosample: SAMN13619043

Bytes: 21838828

Center Name: CHINA AGRICULTURE UNIVERSITY

Classification: 16S

Sequencing Information

Instrument: Illumina NovaSeq 6000

Library Layout: PAIRED

Bioproject: PRJNA596093

Quality Control Information

Filter Percentage: 0.0055

QC Average Length: 249

Retained Reads: 271004

Geographic Information

Country: China

Continent: Asia

Location Name: China: Shaanxi, Qinling

Latitude/Longitude: 33.6289 N 107.5568 E

Sample Information

Host: Bombus modestus

Isolation: -

Biosample Model: -

Collection Date: 2017-09-08

Host Sex: -

Environmental Information

Broad Scale: bamboo biome

Local Scale: inland

Medium: bamboo leaves

Download Files

Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA
Run ID File Size
SRR10725991
20.8 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 205
Fermentation 114
Aerobic_Chemoheterotrophy 88
Animal_Parasites_Or_Symbionts 25
Human_Associated 21
Nitrate_Reduction 19
Human_Gut 14
Mammal_Gut 14
Nitrate_Respiration 11
Nitrogen_Respiration 11
Human_Pathogens_All 9
Dark_Hydrogen_Oxidation 5
Aromatic_Compound_Degradation 5
Respiration_Of_Sulfur_Compounds 4
Nitrogen_Fixation 4
Photosynthetic_Cyanobacteria 4
Oxygenic_Photoautotrophy 4
Photoautotrophy 4
Phototrophy 4
Ureolysis 4
Methylotrophy 3
Thiosulfate_Respiration 3
Nitrite_Respiration 3
Xylanolysis 3
Hydrogenotrophic_Methanogenesis 2
Methanogenesis 2
Methanol_Oxidation 2
Sulfate_Respiration 2
Sulfite_Respiration 2
Nitrate_Denitrification 2
Nitrite_Denitrification 2
Denitrification 2
Chitinolysis 2
Dark_Oxidation_Of_Sulfur_Compounds 2
Methanotrophy 1
Methanogenesis_By_Co2_Reduction_With_H2 1
Sulfur_Respiration 1
Arsenite_Oxidation_Energy_Yielding 1
Dissimilatory_Arsenite_Oxidation 1
Cellulolysis 1
Dark_Sulfide_Oxidation 1
Dark_Sulfur_Oxidation 1
Dark_Thiosulfate_Oxidation 1
Human_Pathogens_Diarrhea 1
Plant_Pathogen 1
Hydrocarbon_Degradation 1
Iron_Respiration 1
Predatory_Or_Exoparasitic 1
Nonphotosynthetic_Cyanobacteria 1
Reductive_Acetogenesis 1
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