SRR10725991 - Bombus modestus

Basic Information

Run: SRR10725991

Assay Type: AMPLICON

Biosample: SAMN13619043

Bytes: 21838828

Center Name: CHINA AGRICULTURE UNIVERSITY

Classification: 16S

Sequencing Information

Instrument: Illumina NovaSeq 6000

Library Layout: PAIRED

Bioproject: PRJNA596093

Geographic Information

Country: China

Continent: Asia

Location Name: China: Shaanxi, Qinling

Latitude/Longitude: 33.6289 N 107.5568 E

Sample Information

Host: Bombus modestus

Isolation: -

Biosample Model: -

Collection Date: 2017-09-08

Host Sex: -

Environmental Information

Broad Scale: bamboo biome

Local Scale: inland

Medium: bamboo leaves

Download Files

Analysis Files

OTU Table

Operational Taxonomic Unit table

Download

OTU Sequences

FASTA file of OTU sequences

Download

FAPROTAX Report

Functional annotation of Amplicon

Download

VSEARCH Taxon

VSEARCH taxonomic composition classification

Download

QIIME Taxon

QIIME2 taxonomic composition classification

Download

Raw Sequencing Files

Direct download from NCBI SRA

Run ID File Size

SRR10725991

20.8 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 205

Chemoheterotrophy

Fermentation 114

Fermentation

Aerobic_Chemoheterotrophy 88

Aerobic_Chemoheterotrophy

Animal_Parasites_Or_Symbionts 25

Animal_Parasites_Or_Symbionts

Human_Associated 21

Human_Associated

Nitrate_Reduction 19

Nitrate_Reduction

Human_Gut 14

Human_Gut

Mammal_Gut 14

Mammal_Gut

Nitrate_Respiration 11

Nitrate_Respiration

Nitrogen_Respiration 11

Nitrogen_Respiration

Human_Pathogens_All 9

Human_Pathogens_All

Dark_Hydrogen_Oxidation 5

Dark_Hydrogen_Oxidation

Aromatic_Compound_Degradation 5

Aromatic_Compound_Degradation

Respiration_Of_Sulfur_Compounds 4

Respiration_Of_Sulfur_Compounds

Nitrogen_Fixation 4

Nitrogen_Fixation

Photosynthetic_Cyanobacteria 4

Photosynthetic_Cyanobacteria

Oxygenic_Photoautotrophy 4

Oxygenic_Photoautotrophy

Photoautotrophy 4

Photoautotrophy

Phototrophy 4

Phototrophy

Ureolysis 4

Ureolysis

Methylotrophy 3

Methylotrophy

Thiosulfate_Respiration 3

Thiosulfate_Respiration

Nitrite_Respiration 3

Nitrite_Respiration

Xylanolysis 3

Xylanolysis

Hydrogenotrophic_Methanogenesis 2

Hydrogenotrophic_Methanogenesis

Methanogenesis 2

Methanogenesis

Methanol_Oxidation 2

Methanol_Oxidation

Sulfate_Respiration 2

Sulfate_Respiration

Sulfite_Respiration 2

Sulfite_Respiration

Nitrate_Denitrification 2

Nitrate_Denitrification

Nitrite_Denitrification 2

Nitrite_Denitrification

Denitrification 2

Denitrification

Chitinolysis 2

Chitinolysis

Dark_Oxidation_Of_Sulfur_Compounds 2

Dark_Oxidation_Of_Sulfur_Compounds

Methanotrophy 1

Methanotrophy

Methanogenesis_By_Co2_Reduction_With_H2 1

Methanogenesis_By_Co2_Reduction_With_H2

Sulfur_Respiration 1

Sulfur_Respiration

Arsenite_Oxidation_Energy_Yielding 1

Arsenite_Oxidation_Energy_Yielding

Dissimilatory_Arsenite_Oxidation 1

Dissimilatory_Arsenite_Oxidation

Cellulolysis 1

Cellulolysis

Dark_Sulfide_Oxidation 1

Dark_Sulfide_Oxidation

Dark_Sulfur_Oxidation 1

Dark_Sulfur_Oxidation

Dark_Thiosulfate_Oxidation 1

Dark_Thiosulfate_Oxidation

Human_Pathogens_Diarrhea 1

Human_Pathogens_Diarrhea

Plant_Pathogen 1

Plant_Pathogen

Hydrocarbon_Degradation 1

Hydrocarbon_Degradation

Iron_Respiration 1

Iron_Respiration

Predatory_Or_Exoparasitic 1

Predatory_Or_Exoparasitic

Nonphotosynthetic_Cyanobacteria 1

Nonphotosynthetic_Cyanobacteria

Reductive_Acetogenesis 1

Reductive_Acetogenesis

Back to Amplicons List

Back to Table