SRR10725990 - Bombus lepidus

Basic Information

Run: SRR10725990

Assay Type: AMPLICON

Biosample: SAMN13619044

Bytes: 21436714

Center Name: CHINA AGRICULTURE UNIVERSITY

Classification: 16S

Sequencing Information

Instrument: Illumina NovaSeq 6000

Library Layout: PAIRED

Bioproject: PRJNA596093

Geographic Information

Country: China

Continent: Asia

Location Name: China: Shaanxi, Qinling

Latitude/Longitude: 33.6289 N 107.5568 E

Sample Information

Host: Bombus lepidus

Isolation: -

Biosample Model: -

Collection Date: 2017-09-08

Host Sex: -

Environmental Information

Broad Scale: bamboo biome

Local Scale: inland

Medium: bamboo leaves

Download Files

Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA

Run ID File Size

SRR10725990

20.4 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 67

Chemoheterotrophy

Fermentation 46

Fermentation

Aerobic_Chemoheterotrophy 21

Aerobic_Chemoheterotrophy

Animal_Parasites_Or_Symbionts 8

Animal_Parasites_Or_Symbionts

Human_Associated 7

Human_Associated

Nitrate_Reduction 7

Nitrate_Reduction

Respiration_Of_Sulfur_Compounds 4

Respiration_Of_Sulfur_Compounds

Human_Pathogens_All 4

Human_Pathogens_All

Human_Gut 4

Human_Gut

Mammal_Gut 4

Mammal_Gut

Sulfate_Respiration 3

Sulfate_Respiration

Aromatic_Compound_Degradation 3

Aromatic_Compound_Degradation

Chitinolysis 2

Chitinolysis

Nitrogen_Fixation 2

Nitrogen_Fixation

Nitrate_Respiration 2

Nitrate_Respiration

Nitrogen_Respiration 2

Nitrogen_Respiration

Methanol_Oxidation 1

Methanol_Oxidation

Methylotrophy 1

Methylotrophy

Sulfur_Respiration 1

Sulfur_Respiration

Thiosulfate_Respiration 1

Thiosulfate_Respiration

Nitrate_Denitrification 1

Nitrate_Denitrification

Nitrite_Denitrification 1

Nitrite_Denitrification

Denitrification 1

Denitrification

Dark_Hydrogen_Oxidation 1

Dark_Hydrogen_Oxidation

Nitrite_Respiration 1

Nitrite_Respiration

Intracellular_Parasites 1

Intracellular_Parasites

Ureolysis 1

Ureolysis

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