SRR10725988 - Bombus pascuorum

Basic Information

Run: SRR10725988

Assay Type: AMPLICON

Biosample: SAMN13619054

Bytes: 21014196

Center Name: CHINA AGRICULTURE UNIVERSITY

Classification: 16S

Sequencing Information

Instrument: Illumina NovaSeq 6000

Library Layout: PAIRED

Bioproject: PRJNA596093

Geographic Information

Country: China

Continent: Asia

Location Name: China: Sichuan, Pingwu

Latitude/Longitude: 32.96745 N 104.10421 E

Sample Information

Host: Bombus pascuorum

Isolation: -

Biosample Model: -

Collection Date: 2018-05-08

Host Sex: -

Environmental Information

Broad Scale: shrub biome

Local Scale: inland

Medium: shrub leaves

Download Files

Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA
Run ID File Size
SRR10725988
20.0 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 32
Fermentation 17
Aerobic_Chemoheterotrophy 13
Human_Associated 4
Animal_Parasites_Or_Symbionts 4
Aromatic_Compound_Degradation 4
Nitrate_Reduction 4
Human_Pathogens_All 3
Human_Gut 2
Mammal_Gut 2
Nitrate_Respiration 2
Nitrogen_Respiration 2
Chitinolysis 1
Aromatic_Hydrocarbon_Degradation 1
Hydrocarbon_Degradation 1
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