SRR10725984 - Bombus flavescens

Basic Information

Run: SRR10725984

Assay Type: AMPLICON

Biosample: SAMN13619058

Bytes: 19917977

Center Name: CHINA AGRICULTURE UNIVERSITY

Classification: 16S

Sequencing Information

Instrument: Illumina NovaSeq 6000

Library Layout: PAIRED

Bioproject: PRJNA596093

Geographic Information

Country: China

Continent: Asia

Location Name: China: Yunnan, Lijiang

Latitude/Longitude: 27.78041 N 98.47991 E

Sample Information

Host: Bombus flavescens

Isolation: -

Biosample Model: -

Collection Date: 2018-06-08

Host Sex: -

Environmental Information

Broad Scale: wetland biome

Local Scale: inland

Medium: wetland mud

Download Files

Analysis Files

OTU Table

Operational Taxonomic Unit table

Download

OTU Sequences

FASTA file of OTU sequences

Download

FAPROTAX Report

Functional annotation of Amplicon

Download

VSEARCH Taxon

VSEARCH taxonomic composition classification

Download

QIIME Taxon

QIIME2 taxonomic composition classification

Download

Raw Sequencing Files

Direct download from NCBI SRA

Run ID File Size

SRR10725984

19.0 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 120

Chemoheterotrophy

Fermentation 67

Fermentation

Aerobic_Chemoheterotrophy 46

Aerobic_Chemoheterotrophy

Sulfate_Respiration 33

Sulfate_Respiration

Respiration_Of_Sulfur_Compounds 33

Respiration_Of_Sulfur_Compounds

Animal_Parasites_Or_Symbionts 20

Animal_Parasites_Or_Symbionts

Human_Associated 16

Human_Associated

Human_Gut 10

Human_Gut

Mammal_Gut 10

Mammal_Gut

Nitrate_Reduction 10

Nitrate_Reduction

Human_Pathogens_All 7

Human_Pathogens_All

Aromatic_Compound_Degradation 5

Aromatic_Compound_Degradation

Ureolysis 4

Ureolysis

Nitrogen_Fixation 3

Nitrogen_Fixation

Nitrate_Respiration 3

Nitrate_Respiration

Nitrogen_Respiration 3

Nitrogen_Respiration

Methanol_Oxidation 2

Methanol_Oxidation

Methylotrophy 2

Methylotrophy

Chitinolysis 2

Chitinolysis

Xylanolysis 2

Xylanolysis

Hydrocarbon_Degradation 2

Hydrocarbon_Degradation

Intracellular_Parasites 2

Intracellular_Parasites

Phototrophy 2

Phototrophy

Cellulolysis 1

Cellulolysis

Dark_Oxidation_Of_Sulfur_Compounds 1

Dark_Oxidation_Of_Sulfur_Compounds

Aromatic_Hydrocarbon_Degradation 1

Aromatic_Hydrocarbon_Degradation

Predatory_Or_Exoparasitic 1

Predatory_Or_Exoparasitic

Nonphotosynthetic_Cyanobacteria 1

Nonphotosynthetic_Cyanobacteria

Photosynthetic_Cyanobacteria 1

Photosynthetic_Cyanobacteria

Oxygenic_Photoautotrophy 1

Oxygenic_Photoautotrophy

Photoautotrophy 1

Photoautotrophy

Photoheterotrophy 1

Photoheterotrophy

Back to Amplicons List

Back to Table