SRR10725976 - Bombus lepidus

Basic Information

Run: SRR10725976

Assay Type: AMPLICON

Biosample: SAMN13619065

Bytes: 18693318

Center Name: CHINA AGRICULTURE UNIVERSITY

Classification: 16S

Sequencing Information

Instrument: Illumina NovaSeq 6000

Library Layout: PAIRED

Bioproject: PRJNA596093

Geographic Information

Country: China

Continent: Asia

Location Name: China: Yunnan, Lijiang

Latitude/Longitude: 27.00198 N 100.09594 E

Sample Information

Host: Bombus lepidus

Isolation: -

Biosample Model: -

Collection Date: 2018-06-16

Host Sex: -

Environmental Information

Broad Scale: wetland biome

Local Scale: inland

Medium: wetland mud

Download Files

Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA
Run ID File Size
SRR10725976
17.8 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 52
Fermentation 24
Aerobic_Chemoheterotrophy 24
Nitrate_Reduction 6
Aromatic_Compound_Degradation 5
Human_Associated 4
Animal_Parasites_Or_Symbionts 4
Nitrate_Respiration 3
Nitrogen_Respiration 3
Methanol_Oxidation 2
Methylotrophy 2
Chitinolysis 2
Human_Pathogens_All 2
Human_Gut 2
Mammal_Gut 2
Nitrate_Denitrification 1
Nitrite_Denitrification 1
Denitrification 1
Dark_Hydrogen_Oxidation 1
Nitrite_Respiration 1
Aromatic_Hydrocarbon_Degradation 1
Hydrocarbon_Degradation 1
Photoheterotrophy 1
Phototrophy 1
Ureolysis 1
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