SRR10569550 - Camponotus japonicus

Basic Information

Run: SRR10569550

Assay Type: AMPLICON

Biosample: SAMN13424848

Bytes: 722649199

Center Name: NATIONAL INSTITUTE OF ADVANCED INDUSTRIAL SCIENCE AND TECHNOLOGY

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJNA592376

Geographic Information

Country: Japan

Continent: Asia

Location Name: Japan: Tsukuba

Latitude/Longitude: 36.2 N 140.1 E

Sample Information

Host: Camponotus japonicus

Isolation: -

Biosample Model: -

Collection Date: 2017-09-20

Host Sex: -

Environmental Information

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Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA

Run ID File Size

SRR10569550

689.2 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 33

Chemoheterotrophy

Aerobic_Chemoheterotrophy 27

Aerobic_Chemoheterotrophy

Aromatic_Compound_Degradation 11

Aromatic_Compound_Degradation

Ureolysis 5

Ureolysis

Nitrate_Reduction 4

Nitrate_Reduction

Nonphotosynthetic_Cyanobacteria 4

Nonphotosynthetic_Cyanobacteria

Methanol_Oxidation 3

Methanol_Oxidation

Methylotrophy 3

Methylotrophy

Predatory_Or_Exoparasitic 3

Predatory_Or_Exoparasitic

Nitrogen_Fixation 2

Nitrogen_Fixation

Fermentation 2

Fermentation

Human_Associated 2

Human_Associated

Animal_Parasites_Or_Symbionts 2

Animal_Parasites_Or_Symbionts

Nitrate_Respiration 2

Nitrate_Respiration

Nitrogen_Respiration 2

Nitrogen_Respiration

Nitrate_Denitrification 1

Nitrate_Denitrification

Nitrite_Denitrification 1

Nitrite_Denitrification

Denitrification 1

Denitrification

Nitrite_Respiration 1

Nitrite_Respiration

Dark_Sulfide_Oxidation 1

Dark_Sulfide_Oxidation

Dark_Sulfur_Oxidation 1

Dark_Sulfur_Oxidation

Dark_Thiosulfate_Oxidation 1

Dark_Thiosulfate_Oxidation

Dark_Oxidation_Of_Sulfur_Compounds 1

Dark_Oxidation_Of_Sulfur_Compounds

Human_Pathogens_All 1

Human_Pathogens_All

Human_Gut 1

Human_Gut

Mammal_Gut 1

Mammal_Gut

Aromatic_Hydrocarbon_Degradation 1

Aromatic_Hydrocarbon_Degradation

Hydrocarbon_Degradation 1

Hydrocarbon_Degradation

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