SRR10569544 - Camponotus japonicus

Basic Information

Run: SRR10569544

Assay Type: AMPLICON

Biosample: SAMN13424814

Bytes: 1504009330

Center Name: NATIONAL INSTITUTE OF ADVANCED INDUSTRIAL SCIENCE AND TECHNOLOGY

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJNA592376

Geographic Information

Country: Japan

Continent: Asia

Location Name: Japan: Tsukuba

Latitude/Longitude: 36.2 N 140.1 E

Sample Information

Host: Camponotus japonicus

Isolation: -

Biosample Model: -

Collection Date: 2017-05-11

Host Sex: -

Environmental Information

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Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA

Run ID File Size

SRR10569544

1.4 GB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 33

Chemoheterotrophy

Aerobic_Chemoheterotrophy 26

Aerobic_Chemoheterotrophy

Aromatic_Compound_Degradation 7

Aromatic_Compound_Degradation

Nitrate_Reduction 6

Nitrate_Reduction

Nonphotosynthetic_Cyanobacteria 6

Nonphotosynthetic_Cyanobacteria

Fermentation 5

Fermentation

Animal_Parasites_Or_Symbionts 5

Animal_Parasites_Or_Symbionts

Nitrogen_Fixation 4

Nitrogen_Fixation

Ureolysis 4

Ureolysis

Human_Pathogens_All 3

Human_Pathogens_All

Human_Associated 3

Human_Associated

Predatory_Or_Exoparasitic 3

Predatory_Or_Exoparasitic

Invertebrate_Parasites 2

Invertebrate_Parasites

Aromatic_Hydrocarbon_Degradation 2

Aromatic_Hydrocarbon_Degradation

Hydrocarbon_Degradation 2

Hydrocarbon_Degradation

Nitrate_Respiration 2

Nitrate_Respiration

Nitrogen_Respiration 2

Nitrogen_Respiration

Methanol_Oxidation 1

Methanol_Oxidation

Methylotrophy 1

Methylotrophy

Nitrate_Denitrification 1

Nitrate_Denitrification

Nitrite_Denitrification 1

Nitrite_Denitrification

Denitrification 1

Denitrification

Dark_Hydrogen_Oxidation 1

Dark_Hydrogen_Oxidation

Nitrite_Respiration 1

Nitrite_Respiration

Human_Pathogens_Nosocomia 1

Human_Pathogens_Nosocomia

Photosynthetic_Cyanobacteria 1

Photosynthetic_Cyanobacteria

Oxygenic_Photoautotrophy 1

Oxygenic_Photoautotrophy

Photoautotrophy 1

Photoautotrophy

Phototrophy 1

Phototrophy

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