SRR10425509 - Pachygrontha antennata

Basic Information

Run: SRR10425509

Assay Type: AMPLICON

Biosample: SAMN13255575

Bytes: 28672705

Center Name: NATIONAL INSTITUTE OF ECOLOGY

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJNA588651

Geographic Information

Country: South Korea

Continent: Asia

Location Name: South Korea: Seoul

Latitude/Longitude: 37.51008 N 127.0767 E

Sample Information

Host: Pachygrontha antennata

Isolation: -

Biosample Model: -

Collection Date: 2018-06-06

Host Sex: -

Environmental Information

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Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA
Run ID File Size
SRR10425509
27.3 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 49
Aerobic_Chemoheterotrophy 42
Ureolysis 5
Methanol_Oxidation 4
Methylotrophy 4
Fermentation 3
Aromatic_Compound_Degradation 2
Human_Pathogens_All 1
Human_Associated 1
Animal_Parasites_Or_Symbionts 1
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