SRR10423978 - aphid

Basic Information

Run: SRR10423978

Assay Type: AMPLICON

Biosample: SAMN13253387

Bytes: 25893782

Center Name: INSTITUTE OF ZOOLOGY, CHINESE ACADEMY OF SCIENCES

Classification: 16S

Sequencing Information

Instrument: Illumina HiSeq 2500

Library Layout: PAIRED

Bioproject: PRJNA588521

Geographic Information

Country: China

Continent: Asia

Location Name: China: Hebei

Latitude/Longitude: not collected

Sample Information

Host: aphid

Isolation: -

Biosample Model: -

Collection Date: 2010-07-01

Host Sex: -

Environmental Information

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Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA
Run ID File Size
SRR10423978
24.7 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 4
Fermentation 2
Aerobic_Chemoheterotrophy 2
Methanol_Oxidation 1
Methylotrophy 1
Nitrate_Denitrification 1
Nitrite_Denitrification 1
Denitrification 1
Dark_Hydrogen_Oxidation 1
Nitrite_Respiration 1
Nitrate_Respiration 1
Nitrate_Reduction 1
Nitrogen_Respiration 1
Intracellular_Parasites 1
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