SRR10192751 - Icosta americana

Basic Information

Run: SRR10192751

Assay Type: AMPLICON

Biosample: SAMN12858637

Bytes: 30575097

Center Name: MICHIGAN STATE UNIVERSITY

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJNA574458

Quality Control Information

Filter Percentage: 0.0185

QC Average Length: 250

Retained Reads: 167690

Geographic Information

Country: USA

Continent: North America

Location Name: USA:Little Gap Banding Station

Latitude/Longitude: 40.8 N 75.529 W

Sample Information

Host: Icosta americana

Isolation: -

Biosample Model: -

Collection Date: 2015-09-08

Host Sex: -

Environmental Information

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Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA
Run ID File Size
SRR10192751
29.2 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 10
Aerobic_Chemoheterotrophy 6
Animal_Parasites_Or_Symbionts 3
Nitrate_Reduction 3
Fermentation 2
Human_Pathogens_All 2
Human_Associated 2
Aromatic_Hydrocarbon_Degradation 2
Aromatic_Compound_Degradation 2
Hydrocarbon_Degradation 2
Ureolysis 2
Dark_Oxidation_Of_Sulfur_Compounds 1
Invertebrate_Parasites 1
Nitrate_Respiration 1
Nitrogen_Respiration 1
Predatory_Or_Exoparasitic 1
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