DRR182979 - Reticulitermes miyatakei

Basic Information

Run: DRR182979

Assay Type: AMPLICON

Biosample: SAMD00172385

Bytes: 13250490

Center Name: NIG

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJDB8349

Geographic Information

Country: Japan

Continent: Asia

Location Name: Japan:Kagoshima, Amami Oshima

Latitude/Longitude: missing

Sample Information

Host: Reticulitermes miyatakei

Isolation: -

Biosample Model: -

Collection Date: -

Host Sex: -

Environmental Information

Broad Scale: insect-associated habitat

Local Scale: intestinal

Medium: gut

Download Files

Analysis Files

OTU Table

Operational Taxonomic Unit table

Download
OTU Sequences

FASTA file of OTU sequences

Download
FAPROTAX Report

Functional annotation of Amplicon

Download
VSEARCH Taxon

VSEARCH taxonomic composition classification

Download
QIIME Taxon

QIIME2 taxonomic composition classification

Download

Raw Sequencing Files

Direct download from NCBI SRA
Run ID File Size
DRR182979
12.6 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 9
Fermentation 8
Sulfate_Respiration 4
Respiration_Of_Sulfur_Compounds 4
Nonphotosynthetic_Cyanobacteria 3
Hydrogenotrophic_Methanogenesis 2
Methanogenesis 2
Methanogenesis_By_Reduction_Of_Methyl_Compounds_With_H2 1
Methylotrophy 1
Dark_Hydrogen_Oxidation 1
Back to Amplicons List
Back to Table