Amplicon

Our database features a diverse collection of 14,992 amplicon sequencing samples, representing various insect species from multiple geographical regions. Raw sequencing data were retrieved from NCBI, curated manually to ensure quality. Data preprocessing involved quality control and merging with Fastp, primer sequence trimming with Seqtk, and a standardized removal of 20 bp from the 5' ends of both forward and reverse reads. Taxonomic composition was analyzed using QIIME2 and Vsearch. Operational Taxonomic Units (OTUs) were classified with two workflows: QIIME2 utilized a pre-trained Greengenes classifier (gg_2022_10_backbone_full_length.nb.qza), while Vsearch employed the SINTAX algorithm with the Greengenes v13.5 reference database. Results were visualized using Krona for an interactive exploration of taxonomic distributions.

15035 Total Samples

Amplicon Types

Distribution of 16S and ITS sequences

Geographic Distribution

Sample distribution by continent

Amplicons

15035 records

Amplicon records associated with insect symbionts from public databases worldwide.

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All 16S Others
Run Assay Type Classification Host Area Env Info Collection Year
SRR17967284 AMPLICON 16S Ctenarytaina sp. New Zealand - Oceania Insect Microbiome - Plant associated 2010
SRR17967285 AMPLICON 16S Ctenarytaina sp. New Zealand - Oceania Insect Microbiome - Plant associated 2010
SRR17967286 AMPLICON 16S Ctenarytaina sp. New Zealand - Oceania Insect Microbiome - Plant associated 2011
SRR17967287 AMPLICON 16S Ctenarytaina sp. New Zealand - Oceania Insect Microbiome - Plant associated 2011
SRR17967288 AMPLICON 16S Ctenarytaina sp. New Zealand - Oceania Insect Microbiome - Plant associated 2011
SRR17967289 AMPLICON 16S Ctenarytaina sp. New Zealand - Oceania Insect Microbiome - Plant associated 2010
SRR17967290 AMPLICON 16S Ctenarytaina pollicaris New Zealand - Oceania Insect Microbiome - Plant associated 2010
SRR17967291 AMPLICON 16S Ctenarytaina pollicaris New Zealand - Oceania Insect Microbiome - Plant associated 2010
SRR17967292 AMPLICON 16S Ctenarytaina pollicaris New Zealand - Oceania Insect Microbiome - Plant associated 2010
SRR17967293 AMPLICON 16S Ctenarytaina pollicaris New Zealand - Oceania Insect Microbiome - Plant associated 2010
SRR17967294 AMPLICON 16S Acizzia albizziae New Zealand - Oceania Insect Microbiome - Plant associated 2010
SRR17967295 AMPLICON 16S Ctenarytaina pollicaris New Zealand - Oceania Insect Microbiome - Plant associated 2010
SRR17967296 AMPLICON 16S Ctenarytaina pollicaris New Zealand - Oceania Insect Microbiome - Plant associated 2010
SRR17967297 AMPLICON 16S Ctenarytaina pollicaris New Zealand - Oceania Insect Microbiome - Plant associated 2010
SRR17967298 AMPLICON 16S Ctenarytaina pollicaris New Zealand - Oceania Insect Microbiome - Plant associated 2010
SRR17967299 AMPLICON 16S Ctenarytaina pollicaris New Zealand - Oceania Insect Microbiome - Plant associated 2010
SRR17967300 AMPLICON 16S Ctenarytaina pollicaris New Zealand - Oceania Insect Microbiome - Plant associated 2010
SRR17967301 AMPLICON 16S Ctenarytaina pollicaris New Zealand - Oceania Insect Microbiome - Plant associated 2011
SRR17967302 AMPLICON 16S Ctenarytaina longicauda New Zealand - Oceania Insect Microbiome - Plant associated 2011
SRR17967303 AMPLICON 16S Ctenarytaina longicauda New Zealand - Oceania Insect Microbiome - Plant associated 2011
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