Amplicon

Our database features a diverse collection of 14,992 amplicon sequencing samples, representing various insect species from multiple geographical regions. Raw sequencing data were retrieved from NCBI, curated manually to ensure quality. Data preprocessing involved quality control and merging with Fastp, primer sequence trimming with Seqtk, and a standardized removal of 20 bp from the 5' ends of both forward and reverse reads. Taxonomic composition was analyzed using QIIME2 and Vsearch. Operational Taxonomic Units (OTUs) were classified with two workflows: QIIME2 utilized a pre-trained Greengenes classifier (gg_2022_10_backbone_full_length.nb.qza), while Vsearch employed the SINTAX algorithm with the Greengenes v13.5 reference database. Results were visualized using Krona for an interactive exploration of taxonomic distributions.

15035 Total Samples

Amplicon Types

Distribution of 16S and ITS sequences

Geographic Distribution

Sample distribution by continent

Amplicons

15035 records

Amplicon records associated with insect symbionts from public databases worldwide.

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All 16S Others
Run Assay Type Classification Host Area Env Info Collection Year
SRR17967264 AMPLICON 16S Psylla frodobagginsi New Zealand - Oceania Insect Microbiome - Plant associated 2011
SRR17967265 AMPLICON 16S Psylla frodobagginsi New Zealand - Oceania Insect Microbiome - Plant associated 2011
SRR17967266 AMPLICON 16S Psylla frodobagginsi New Zealand - Oceania Insect Microbiome - Plant associated 2011
SRR17967267 AMPLICON 16S Acizzia dodonaeae New Zealand - Oceania Insect Microbiome - Plant associated 2010
SRR17967268 AMPLICON 16S Psylla frodobagginsi New Zealand - Oceania Insect Microbiome - Plant associated 2010
SRR17967269 AMPLICON 16S Psylla sp. New Zealand - Oceania Insect Microbiome - Plant associated 2011
SRR17967270 AMPLICON 16S Psylla sp. New Zealand - Oceania Insect Microbiome - Plant associated 2011
SRR17967271 AMPLICON 16S Psylla sp. New Zealand - Oceania Insect Microbiome - Plant associated 2011
SRR17967272 AMPLICON 16S Psylla sp. New Zealand - Oceania Insect Microbiome - Plant associated 2011
SRR17967273 AMPLICON 16S Psylla sp. New Zealand - Oceania Insect Microbiome - Plant associated 2011
SRR17967274 AMPLICON 16S Psylla sp. New Zealand - Oceania Insect Microbiome - Plant associated 2010
SRR17967275 AMPLICON 16S Psylla sp. New Zealand - Oceania Insect Microbiome - Plant associated 2010
SRR17967276 AMPLICON 16S Ctenarytaina sp. New Zealand - Oceania Insect Microbiome - Plant associated 2010
SRR17967277 AMPLICON 16S Ctenarytaina sp. New Zealand - Oceania Insect Microbiome - Plant associated 2010
SRR17967278 AMPLICON 16S Ctenarytaina sp. New Zealand - Oceania Insect Microbiome - Plant associated 2010
SRR17967279 AMPLICON 16S Ctenarytaina sp. New Zealand - Oceania Insect Microbiome - Plant associated 2010
SRR17967280 AMPLICON 16S Ctenarytaina sp. New Zealand - Oceania Insect Microbiome - Plant associated 2010
SRR17967281 AMPLICON 16S Ctenarytaina sp. New Zealand - Oceania Insect Microbiome - Plant associated 2010
SRR17967282 AMPLICON 16S Ctenarytaina sp. New Zealand - Oceania Insect Microbiome - Plant associated 2010
SRR17967283 AMPLICON 16S Acizzia albizziae New Zealand - Oceania Insect Microbiome - Plant associated 2010
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