Amplicon

Our database features a diverse collection of 14,992 amplicon sequencing samples, representing various insect species from multiple geographical regions. Raw sequencing data were retrieved from NCBI, curated manually to ensure quality. Data preprocessing involved quality control and merging with Fastp, primer sequence trimming with Seqtk, and a standardized removal of 20 bp from the 5' ends of both forward and reverse reads. Taxonomic composition was analyzed using QIIME2 and Vsearch. Operational Taxonomic Units (OTUs) were classified with two workflows: QIIME2 utilized a pre-trained Greengenes classifier (gg_2022_10_backbone_full_length.nb.qza), while Vsearch employed the SINTAX algorithm with the Greengenes v13.5 reference database. Results were visualized using Krona for an interactive exploration of taxonomic distributions.

15035 Total Samples

Amplicon Types

Distribution of 16S and ITS sequences

Geographic Distribution

Sample distribution by continent

Amplicons

15035 records

Amplicon records associated with insect symbionts from public databases worldwide.

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All 16S Others
Run Assay Type Classification Host Area Env Info Collection Year
SRR17967244 AMPLICON 16S Powellia vitreoradiata New Zealand - Oceania Insect Microbiome - Plant associated 2011
SRR17967245 AMPLICON 16S Powellia vitreoradiata New Zealand - Oceania Insect Microbiome - Plant associated 2011
SRR17967246 AMPLICON 16S Powellia vitreoradiata New Zealand - Oceania Insect Microbiome - Plant associated 2011
SRR17967247 AMPLICON 16S Powellia vitreoradiata New Zealand - Oceania Insect Microbiome - Plant associated 2011
SRR17967248 AMPLICON 16S Powellia bifida New Zealand - Oceania Insect Microbiome - Plant associated 2010
SRR17967249 AMPLICON 16S Powellia bifida New Zealand - Oceania Insect Microbiome - Plant associated 2010
SRR17967250 AMPLICON 16S Powellia bifida New Zealand - Oceania Insect Microbiome - Plant associated 2010
SRR17967251 AMPLICON 16S Powellia bifida New Zealand - Oceania Insect Microbiome - Plant associated 2011
SRR17967252 AMPLICON 16S Trioza adventicia New Zealand - Oceania Insect Microbiome - Plant associated 2011
SRR17967253 AMPLICON 16S Powellia acuta New Zealand - Oceania Insect Microbiome - Plant associated 2010
SRR17967254 AMPLICON 16S Powellia acuta New Zealand - Oceania Insect Microbiome - Plant associated 2010
SRR17967255 AMPLICON 16S Psyllopsis fraxinicola New Zealand - Oceania Insect Microbiome - Plant associated 2011
SRR17967256 AMPLICON 16S Acizzia dodonaeae New Zealand - Oceania Insect Microbiome - Plant associated 2010
SRR17967257 AMPLICON 16S Psyllopsis fraxinicola New Zealand - Oceania Insect Microbiome - Plant associated 2011
SRR17967258 AMPLICON 16S Psyllopsis fraxinicola New Zealand - Oceania Insect Microbiome - Plant associated 2011
SRR17967259 AMPLICON 16S Psyllopsis fraxinicola New Zealand - Oceania Insect Microbiome - Plant associated 2010
SRR17967260 AMPLICON 16S Psyllopsis fraxini New Zealand - Oceania Insect Microbiome - Plant associated 2011
SRR17967261 AMPLICON 16S Psyllopsis fraxini New Zealand - Oceania Insect Microbiome - Plant associated 2011
SRR17967262 AMPLICON 16S Psyllopsis fraxini New Zealand - Oceania Insect Microbiome - Plant associated 2011
SRR17967263 AMPLICON 16S Psylla frodobagginsi New Zealand - Oceania Insect Microbiome - Plant associated 2011
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