Amplicon

Our database features a diverse collection of 14,992 amplicon sequencing samples, representing various insect species from multiple geographical regions. Raw sequencing data were retrieved from NCBI, curated manually to ensure quality. Data preprocessing involved quality control and merging with Fastp, primer sequence trimming with Seqtk, and a standardized removal of 20 bp from the 5' ends of both forward and reverse reads. Taxonomic composition was analyzed using QIIME2 and Vsearch. Operational Taxonomic Units (OTUs) were classified with two workflows: QIIME2 utilized a pre-trained Greengenes classifier (gg_2022_10_backbone_full_length.nb.qza), while Vsearch employed the SINTAX algorithm with the Greengenes v13.5 reference database. Results were visualized using Krona for an interactive exploration of taxonomic distributions.

15035 Total Samples

Amplicon Types

Distribution of 16S and ITS sequences

Geographic Distribution

Sample distribution by continent

Amplicons

15035 records

Amplicon records associated with insect symbionts from public databases worldwide.

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All 16S Others
Run Assay Type Classification Host Area Env Info Collection Year
SRR17967204 AMPLICON 16S Ctenarytaina spatulata New Zealand - Oceania Insect Microbiome - Plant associated 2010
SRR17967205 AMPLICON 16S Acizzia dodonaeae New Zealand - Oceania Insect Microbiome - Plant associated 2010
SRR17967206 AMPLICON 16S Ctenarytaina spatulata New Zealand - Oceania Insect Microbiome - Plant associated 2010
SRR17967207 AMPLICON 16S Ctenarytaina spatulata New Zealand - Oceania Insect Microbiome - Plant associated 2011
SRR17967208 AMPLICON 16S Ctenarytaina spatulata New Zealand - Oceania Insect Microbiome - Plant associated 2011
SRR17967209 AMPLICON 16S Ctenarytaina spatulata New Zealand - Oceania Insect Microbiome - Plant associated 2011
SRR17967210 AMPLICON 16S Ctenarytaina spatulata New Zealand - Oceania Insect Microbiome - Plant associated 2011
SRR17967211 AMPLICON 16S Ctenarytaina spatulata New Zealand - Oceania Insect Microbiome - Plant associated 2011
SRR17967212 AMPLICON 16S Ctenarytaina spatulata New Zealand - Oceania Insect Microbiome - Plant associated 2011
SRR17967213 AMPLICON 16S Ctenarytaina spatulata New Zealand - Oceania Insect Microbiome - Plant associated 2010
SRR17967214 AMPLICON 16S Ctenarytaina spatulata New Zealand - Oceania Insect Microbiome - Plant associated 2010
SRR17967215 AMPLICON 16S Ctenarytaina sp. New Zealand - Oceania Insect Microbiome - Plant associated 2010
SRR17967216 AMPLICON 16S Acizzia dodonaeae New Zealand - Oceania Insect Microbiome - Plant associated 2010
SRR17967217 AMPLICON 16S Ctenarytaina sp. New Zealand - Oceania Insect Microbiome - Plant associated 2010
SRR17967218 AMPLICON 16S Ctenarytaina sp. New Zealand - Oceania Insect Microbiome - Plant associated 2011
SRR17967219 AMPLICON 16S Anomalopsylla sp. New Zealand - Oceania Insect Microbiome - Plant associated 2010
SRR17967220 AMPLICON 16S Ctenarytaina sp. New Zealand - Oceania Insect Microbiome - Plant associated 2010
SRR17967221 AMPLICON 16S Anomalopsylla sp. New Zealand - Oceania Insect Microbiome - Plant associated 2010
SRR17967222 AMPLICON 16S Anomalopsylla sp. New Zealand - Oceania Insect Microbiome - Plant associated 2010
SRR17967223 AMPLICON 16S Anomalopsylla sp. New Zealand - Oceania Insect Microbiome - Plant associated 2010
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