Amplicon

Our database features a diverse collection of 14,992 amplicon sequencing samples, representing various insect species from multiple geographical regions. Raw sequencing data were retrieved from NCBI, curated manually to ensure quality. Data preprocessing involved quality control and merging with Fastp, primer sequence trimming with Seqtk, and a standardized removal of 20 bp from the 5' ends of both forward and reverse reads. Taxonomic composition was analyzed using QIIME2 and Vsearch. Operational Taxonomic Units (OTUs) were classified with two workflows: QIIME2 utilized a pre-trained Greengenes classifier (gg_2022_10_backbone_full_length.nb.qza), while Vsearch employed the SINTAX algorithm with the Greengenes v13.5 reference database. Results were visualized using Krona for an interactive exploration of taxonomic distributions.

15035 Total Samples

Amplicon Types

Distribution of 16S and ITS sequences

Geographic Distribution

Sample distribution by continent

Amplicons

15035 records

Amplicon records associated with insect symbionts from public databases worldwide.

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All 16S Others
Run Assay Type Classification Host Area Env Info Collection Year
SRR17967184 AMPLICON 16S Powellia colorata New Zealand - Oceania Insect Microbiome - Plant associated 2012
SRR17967185 AMPLICON 16S Trioza sp. New Zealand - Oceania Insect Microbiome - Plant associated 2012
SRR17967186 AMPLICON 16S Trioza sp. New Zealand - Oceania Insect Microbiome - Plant associated 2011
SRR17967187 AMPLICON 16S Powellia bifida New Zealand - Oceania Insect Microbiome - Plant associated 2010
SRR17967188 AMPLICON 16S Acizzia dodonaeae New Zealand - Oceania Insect Microbiome - Plant associated 2010
SRR17967189 AMPLICON 16S Acizzia acaciae New Zealand - Oceania Insect Microbiome - Plant associated 2011
SRR17967190 AMPLICON 16S Powellia bifida New Zealand - Oceania Insect Microbiome - Plant associated 2010
SRR17967191 AMPLICON 16S Powellia bifida New Zealand - Oceania Insect Microbiome - Plant associated 2010
SRR17967192 AMPLICON 16S Psylla sp. New Zealand - Oceania Insect Microbiome - Plant associated 2010
SRR17967193 AMPLICON 16S Psylla apicalis New Zealand - Oceania Insect Microbiome - Plant associated 2011
SRR17967194 AMPLICON 16S Acizzia dodonaeae New Zealand - Oceania Insect Microbiome - Plant associated 2010
SRR17967195 AMPLICON 16S Psylla apicalis New Zealand - Oceania Insect Microbiome - Plant associated 2011
SRR17967196 AMPLICON 16S Psylla apicalis New Zealand - Oceania Insect Microbiome - Plant associated 2011
SRR17967197 AMPLICON 16S Psylla apicalis New Zealand - Oceania Insect Microbiome - Plant associated 2011
SRR17967198 AMPLICON 16S Mycopsylla fici New Zealand - Oceania Insect Microbiome - Plant associated 2011
SRR17967199 AMPLICON 16S Mycopsylla fici New Zealand - Oceania Insect Microbiome - Plant associated 2011
SRR17967200 AMPLICON 16S Mycopsylla fici New Zealand - Oceania Insect Microbiome - Plant associated 2011
SRR17967201 AMPLICON 16S Glycaspis granulata New Zealand - Oceania Insect Microbiome - Plant associated 2011
SRR17967202 AMPLICON 16S Eucalyptolyma maideni Australia - Oceania Insect Microbiome - Plant associated 2010
SRR17967203 AMPLICON 16S Ctenarytaina thysanura New Zealand - Oceania Insect Microbiome - Plant associated 2011
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