Amplicon

Our database features a diverse collection of 14,992 amplicon sequencing samples, representing various insect species from multiple geographical regions. Raw sequencing data were retrieved from NCBI, curated manually to ensure quality. Data preprocessing involved quality control and merging with Fastp, primer sequence trimming with Seqtk, and a standardized removal of 20 bp from the 5' ends of both forward and reverse reads. Taxonomic composition was analyzed using QIIME2 and Vsearch. Operational Taxonomic Units (OTUs) were classified with two workflows: QIIME2 utilized a pre-trained Greengenes classifier (gg_2022_10_backbone_full_length.nb.qza), while Vsearch employed the SINTAX algorithm with the Greengenes v13.5 reference database. Results were visualized using Krona for an interactive exploration of taxonomic distributions.

15035 Total Samples

Amplicon Types

Distribution of 16S and ITS sequences

Geographic Distribution

Sample distribution by continent

Amplicons

15035 records

Amplicon records associated with insect symbionts from public databases worldwide.

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All 16S Others
Run Assay Type Classification Host Area Env Info Collection Year
SRR17967144 AMPLICON 16S Powellia subvexa New Zealand - Oceania Insect Microbiome - Plant associated 2013
SRR17967145 AMPLICON 16S Powellia subvexa New Zealand - Oceania Insect Microbiome - Plant associated 2012
SRR17967146 AMPLICON 16S Powellia subvexa New Zealand - Oceania Insect Microbiome - Plant associated 2012
SRR17967147 AMPLICON 16S Powellia subacuta New Zealand - Oceania Insect Microbiome - Plant associated 2011
SRR17967148 AMPLICON 16S Powellia subacuta New Zealand - Oceania Insect Microbiome - Plant associated 2011
SRR17967149 AMPLICON 16S Trioza sp. New Zealand - Oceania Insect Microbiome - Plant associated 2012
SRR17967150 AMPLICON 16S Acizzia hakeae New Zealand - Oceania Insect Microbiome - Plant associated 2011
SRR17967151 AMPLICON 16S Trioza sp. New Zealand - Oceania Insect Microbiome - Plant associated 2012
SRR17967152 AMPLICON 16S Trioza sp. New Zealand - Oceania Insect Microbiome - Plant associated 2012
SRR17967153 AMPLICON 16S Trioza sp. New Zealand - Oceania Insect Microbiome - Plant associated 2010
SRR17967154 AMPLICON 16S Trioza sp. New Zealand - Oceania Insect Microbiome - Plant associated 2012
SRR17967155 AMPLICON 16S Powellia acuta New Zealand - Oceania Insect Microbiome - Plant associated 2011
SRR17967156 AMPLICON 16S Trioza sp. New Zealand - Oceania Insect Microbiome - Plant associated 2013
SRR17967157 AMPLICON 16S Trioza sp. New Zealand - Oceania Insect Microbiome - Plant associated 2013
SRR17967158 AMPLICON 16S Trioza sp. New Zealand - Oceania Insect Microbiome - Plant associated 2012
SRR17967159 AMPLICON 16S Trioza sp. New Zealand - Oceania Insect Microbiome - Plant associated 2010
SRR17967160 AMPLICON 16S Powellia panacis New Zealand - Oceania Insect Microbiome - Plant associated 2011
SRR17967161 AMPLICON 16S Acizzia hakeae New Zealand - Oceania Insect Microbiome - Plant associated 2010
SRR17967162 AMPLICON 16S Trioza sp. New Zealand - Oceania Insect Microbiome - Plant associated 2013
SRR17967163 AMPLICON 16S Trioza sp. New Zealand - Oceania Insect Microbiome - Plant associated 2013
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