Amplicon

Our database features a diverse collection of 14,992 amplicon sequencing samples, representing various insect species from multiple geographical regions. Raw sequencing data were retrieved from NCBI, curated manually to ensure quality. Data preprocessing involved quality control and merging with Fastp, primer sequence trimming with Seqtk, and a standardized removal of 20 bp from the 5' ends of both forward and reverse reads. Taxonomic composition was analyzed using QIIME2 and Vsearch. Operational Taxonomic Units (OTUs) were classified with two workflows: QIIME2 utilized a pre-trained Greengenes classifier (gg_2022_10_backbone_full_length.nb.qza), while Vsearch employed the SINTAX algorithm with the Greengenes v13.5 reference database. Results were visualized using Krona for an interactive exploration of taxonomic distributions.

15035 Total Samples

Amplicon Types

Distribution of 16S and ITS sequences

Geographic Distribution

Sample distribution by continent

Amplicons

15035 records

Amplicon records associated with insect symbionts from public databases worldwide.

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All 16S Others
Run Assay Type Classification Host Area Env Info Collection Year
SRR17967124 AMPLICON 16S Trioza sp. New Zealand - Oceania Insect Microbiome - Plant associated 2013
SRR17967125 AMPLICON 16S Trioza sp. New Zealand - Oceania Insect Microbiome - Plant associated 2013
SRR17967126 AMPLICON 16S Powellia fasciata New Zealand - Oceania Insect Microbiome - Plant associated 2011
SRR17967127 AMPLICON 16S Acizzia errabunda New Zealand - Oceania Insect Microbiome - Plant associated 2011
SRR17967128 AMPLICON 16S Powellia fasciata New Zealand - Oceania Insect Microbiome - Plant associated 2011
SRR17967129 AMPLICON 16S Powellia falcata New Zealand - Oceania Insect Microbiome - Plant associated 2011
SRR17967130 AMPLICON 16S Powellia falcata New Zealand - Oceania Insect Microbiome - Plant associated 2011
SRR17967131 AMPLICON 16S Powellia falcata New Zealand - Oceania Insect Microbiome - Plant associated 2011
SRR17967132 AMPLICON 16S Powellia falcata New Zealand - Oceania Insect Microbiome - Plant associated 2011
SRR17967133 AMPLICON 16S Powellia emarginata New Zealand - Oceania Insect Microbiome - Plant associated 2010
SRR17967134 AMPLICON 16S Powellia doryphora New Zealand - Oceania Insect Microbiome - Plant associated 2011
SRR17967135 AMPLICON 16S Powellia doryphora New Zealand - Oceania Insect Microbiome - Plant associated 2011
SRR17967136 AMPLICON 16S Powellia vitreoradiata New Zealand - Oceania Insect Microbiome - Plant associated 2011
SRR17967137 AMPLICON 16S Powellia vitreoradiata New Zealand - Oceania Insect Microbiome - Plant associated 2011
SRR17967138 AMPLICON 16S Powellia vitreoradiata New Zealand - Oceania Insect Microbiome - Plant associated 2011
SRR17967139 AMPLICON 16S Acizzia jucunda New Zealand - Oceania Insect Microbiome - Plant associated 2010
SRR17967140 AMPLICON 16S Powellia vitreoradiata New Zealand - Oceania Insect Microbiome - Plant associated 2011
SRR17967141 AMPLICON 16S Powellia vitreoradiata New Zealand - Oceania Insect Microbiome - Plant associated 2011
SRR17967142 AMPLICON 16S Powellia vitreoradiata New Zealand - Oceania Insect Microbiome - Plant associated 2010
SRR17967143 AMPLICON 16S Powellia subvexa New Zealand - Oceania Insect Microbiome - Plant associated 2013
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