Amplicon

Our database features a diverse collection of 14,992 amplicon sequencing samples, representing various insect species from multiple geographical regions. Raw sequencing data were retrieved from NCBI, curated manually to ensure quality. Data preprocessing involved quality control and merging with Fastp, primer sequence trimming with Seqtk, and a standardized removal of 20 bp from the 5' ends of both forward and reverse reads. Taxonomic composition was analyzed using QIIME2 and Vsearch. Operational Taxonomic Units (OTUs) were classified with two workflows: QIIME2 utilized a pre-trained Greengenes classifier (gg_2022_10_backbone_full_length.nb.qza), while Vsearch employed the SINTAX algorithm with the Greengenes v13.5 reference database. Results were visualized using Krona for an interactive exploration of taxonomic distributions.

15035 Total Samples

Amplicon Types

Distribution of 16S and ITS sequences

Geographic Distribution

Sample distribution by continent

Amplicons

15035 records

Amplicon records associated with insect symbionts from public databases worldwide.

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Run Assay Type Classification Host Area Env Info Collection Year
SRR17967104 AMPLICON 16S Ctenarytaina eucalypti New Zealand - Oceania Insect Microbiome - Plant associated 2011
SRR17967105 AMPLICON 16S Ctenarytaina eucalypti New Zealand - Oceania Insect Microbiome - Plant associated 2011
SRR17967106 AMPLICON 16S Ctenarytaina eucalypti New Zealand - Oceania Insect Microbiome - Plant associated 2011
SRR17967107 AMPLICON 16S Ctenarytaina eucalypti New Zealand - Oceania Insect Microbiome - Plant associated 2011
SRR17967108 AMPLICON 16S Trioza sp. New Zealand - Oceania Insect Microbiome - Plant associated 2012
SRR17967109 AMPLICON 16S Trioza sp. New Zealand - Oceania Insect Microbiome - Plant associated 2011
SRR17967110 AMPLICON 16S Powellia obscura New Zealand - Oceania Insect Microbiome - Plant associated 2013
SRR17967111 AMPLICON 16S Powellia obscura New Zealand - Oceania Insect Microbiome - Plant associated 2013
SRR17967112 AMPLICON 16S Powellia obscura New Zealand - Oceania Insect Microbiome - Plant associated 2011
SRR17967113 AMPLICON 16S Trioza sp. New Zealand - Oceania Insect Microbiome - Plant associated 2013
SRR17967114 AMPLICON 16S Trioza sp. New Zealand - Oceania Insect Microbiome - Plant associated 2013
SRR17967115 AMPLICON 16S Trioza sp. New Zealand - Oceania Insect Microbiome - Plant associated 2011
SRR17967116 AMPLICON 16S Acizzia hakeae New Zealand - Oceania Insect Microbiome - Plant associated 2010
SRR17967117 AMPLICON 16S Powellia irregularis New Zealand - Oceania Insect Microbiome - Plant associated 2012
SRR17967118 AMPLICON 16S Powellia irregularis New Zealand - Oceania Insect Microbiome - Plant associated 2011
SRR17967119 AMPLICON 16S Powellia irregularis New Zealand - Oceania Insect Microbiome - Plant associated 2011
SRR17967120 AMPLICON 16S Powellia irregularis New Zealand - Oceania Insect Microbiome - Plant associated 2010
SRR17967121 AMPLICON 16S Powellia hebicola New Zealand - Oceania Insect Microbiome - Plant associated 2011
SRR17967122 AMPLICON 16S Powellia gourlayi New Zealand - Oceania Insect Microbiome - Plant associated 2012
SRR17967123 AMPLICON 16S Powellia gourlayi New Zealand - Oceania Insect Microbiome - Plant associated 2012
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