Amplicon

Our database features a diverse collection of 14,992 amplicon sequencing samples, representing various insect species from multiple geographical regions. Raw sequencing data were retrieved from NCBI, curated manually to ensure quality. Data preprocessing involved quality control and merging with Fastp, primer sequence trimming with Seqtk, and a standardized removal of 20 bp from the 5' ends of both forward and reverse reads. Taxonomic composition was analyzed using QIIME2 and Vsearch. Operational Taxonomic Units (OTUs) were classified with two workflows: QIIME2 utilized a pre-trained Greengenes classifier (gg_2022_10_backbone_full_length.nb.qza), while Vsearch employed the SINTAX algorithm with the Greengenes v13.5 reference database. Results were visualized using Krona for an interactive exploration of taxonomic distributions.

15035 Total Samples

Amplicon Types

Distribution of 16S and ITS sequences

Geographic Distribution

Sample distribution by continent

Amplicons

15035 records

Amplicon records associated with insect symbionts from public databases worldwide.

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All 16S Others
Run Assay Type Classification Host Area Env Info Collection Year
SRR17967084 AMPLICON 16S Ctenarytaina sp. New Zealand - Oceania Insect Microbiome - Plant associated 2011
SRR17967085 AMPLICON 16S Ctenarytaina sp. New Zealand - Oceania Insect Microbiome - Plant associated 2010
SRR17967086 AMPLICON 16S Ctenarytaina eucalypti Australia - Oceania Insect Microbiome - Plant associated 2010
SRR17967087 AMPLICON 16S Ctenarytaina eucalypti Australia - Oceania Insect Microbiome - Plant associated 2010
SRR17967088 AMPLICON 16S Ctenarytaina eucalypti Australia - Oceania Insect Microbiome - Plant associated 2010
SRR17967089 AMPLICON 16S Ctenarytaina eucalypti Australia - Oceania Insect Microbiome - Plant associated 2010
SRR17967090 AMPLICON 16S Acizzia albizziae New Zealand - Oceania Insect Microbiome - Plant associated 2011
SRR17967091 AMPLICON 16S Ctenarytaina eucalypti New Zealand - Oceania Insect Microbiome - Plant associated 2010
SRR17967092 AMPLICON 16S Ctenarytaina eucalypti New Zealand - Oceania Insect Microbiome - Plant associated 2010
SRR17967093 AMPLICON 16S Ctenarytaina eucalypti Australia - Oceania Insect Microbiome - Plant associated 2010
SRR17967094 AMPLICON 16S Ctenarytaina eucalypti Australia - Oceania Insect Microbiome - Plant associated 2010
SRR17967095 AMPLICON 16S Ctenarytaina eucalypti Australia - Oceania Insect Microbiome - Plant associated 2010
SRR17967096 AMPLICON 16S Ctenarytaina eucalypti New Zealand - Oceania Insect Microbiome - Plant associated 2010
SRR17967097 AMPLICON 16S Ctenarytaina eucalypti New Zealand - Oceania Insect Microbiome - Plant associated 2010
SRR17967098 AMPLICON 16S Ctenarytaina eucalypti New Zealand - Oceania Insect Microbiome - Plant associated 2010
SRR17967099 AMPLICON 16S Ctenarytaina eucalypti New Zealand - Oceania Insect Microbiome - Plant associated 2010
SRR17967100 AMPLICON 16S Ctenarytaina eucalypti New Zealand - Oceania Insect Microbiome - Plant associated 2010
SRR17967101 AMPLICON 16S Acizzia albizziae New Zealand - Oceania Insect Microbiome - Plant associated 2011
SRR17967102 AMPLICON 16S Ctenarytaina eucalypti New Zealand - Oceania Insect Microbiome - Plant associated 2010
SRR17967103 AMPLICON 16S Ctenarytaina eucalypti New Zealand - Oceania Insect Microbiome - Plant associated 2011
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