Amplicon

Our database features a diverse collection of 14,992 amplicon sequencing samples, representing various insect species from multiple geographical regions. Raw sequencing data were retrieved from NCBI, curated manually to ensure quality. Data preprocessing involved quality control and merging with Fastp, primer sequence trimming with Seqtk, and a standardized removal of 20 bp from the 5' ends of both forward and reverse reads. Taxonomic composition was analyzed using QIIME2 and Vsearch. Operational Taxonomic Units (OTUs) were classified with two workflows: QIIME2 utilized a pre-trained Greengenes classifier (gg_2022_10_backbone_full_length.nb.qza), while Vsearch employed the SINTAX algorithm with the Greengenes v13.5 reference database. Results were visualized using Krona for an interactive exploration of taxonomic distributions.

15035 Total Samples

Amplicon Types

Distribution of 16S and ITS sequences

Geographic Distribution

Sample distribution by continent

Amplicons

15035 records

Amplicon records associated with insect symbionts from public databases worldwide.

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All 16S Others
Run Assay Type Classification Host Area Env Info Collection Year
SRR17967064 AMPLICON 16S Triozid sp. New Zealand - Oceania Insect Microbiome - Plant associated 2011
SRR17967065 AMPLICON 16S Casuarinicola australis Australia - Oceania Insect Microbiome - Plant associated 2010
SRR17967066 AMPLICON 16S Casuarinicola australis New Zealand - Oceania Insect Microbiome - Plant associated 2011
SRR17967067 AMPLICON 16S Calophya schini New Zealand - Oceania Insect Microbiome - Plant associated 2011
SRR17967068 AMPLICON 16S Acizzia acaciaebaileyanae Australia - Oceania Insect Microbiome - Plant associated 2010
SRR17967069 AMPLICON 16S Calophya schini New Zealand - Oceania Insect Microbiome - Plant associated 2011
SRR17967070 AMPLICON 16S Blastopsylla occidentalis New Zealand - Oceania Insect Microbiome - Plant associated 2011
SRR17967071 AMPLICON 16S Blastopsylla occidentalis New Zealand - Oceania Insect Microbiome - Plant associated 2011
SRR17967072 AMPLICON 16S Psylla foersteri New Zealand - Oceania Insect Microbiome - Plant associated 2011
SRR17967073 AMPLICON 16S Psylla foersteri New Zealand - Oceania Insect Microbiome - Plant associated 2011
SRR17967074 AMPLICON 16S Bactericera cockerelli New Zealand - Oceania Insect Microbiome - Plant associated 2011
SRR17967075 AMPLICON 16S Atmetocranium myersi New Zealand - Oceania Insect Microbiome - Plant associated 2012
SRR17967076 AMPLICON 16S Atmetocranium myersi New Zealand - Oceania Insect Microbiome - Plant associated 2012
SRR17967077 AMPLICON 16S Arytainilla spartiophila New Zealand - Oceania Insect Microbiome - Plant associated 2011
SRR17967078 AMPLICON 16S Arytainilla spartiophila New Zealand - Oceania Insect Microbiome - Plant associated 2011
SRR17967079 AMPLICON 16S Acizzia acaciaebaileyanae Australia - Oceania Insect Microbiome - Plant associated 2010
SRR17967080 AMPLICON 16S Ctenarytaina sp. New Zealand - Oceania Insect Microbiome - Plant associated 2011
SRR17967081 AMPLICON 16S Ctenarytaina sp. New Zealand - Oceania Insect Microbiome - Plant associated 2011
SRR17967082 AMPLICON 16S Ctenarytaina sp. New Zealand - Oceania Insect Microbiome - Plant associated 2011
SRR17967083 AMPLICON 16S Ctenarytaina sp. New Zealand - Oceania Insect Microbiome - Plant associated 2011
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