Amplicon

Our database features a diverse collection of 14,992 amplicon sequencing samples, representing various insect species from multiple geographical regions. Raw sequencing data were retrieved from NCBI, curated manually to ensure quality. Data preprocessing involved quality control and merging with Fastp, primer sequence trimming with Seqtk, and a standardized removal of 20 bp from the 5' ends of both forward and reverse reads. Taxonomic composition was analyzed using QIIME2 and Vsearch. Operational Taxonomic Units (OTUs) were classified with two workflows: QIIME2 utilized a pre-trained Greengenes classifier (gg_2022_10_backbone_full_length.nb.qza), while Vsearch employed the SINTAX algorithm with the Greengenes v13.5 reference database. Results were visualized using Krona for an interactive exploration of taxonomic distributions.

15035 Total Samples

Amplicon Types

Distribution of 16S and ITS sequences

Geographic Distribution

Sample distribution by continent

Amplicons

15035 records

Amplicon records associated with insect symbionts from public databases worldwide.

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All 16S Others
Run Assay Type Classification Host Area Env Info Collection Year
SRR17168935 AMPLICON 16S Strebla guajiro Brazil - South America insect-associated habitat - organic material -
SRR17168936 AMPLICON 16S Strebla guajiro Brazil - South America insect-associated habitat - organic material -
SRR17168937 AMPLICON 16S Megistopoda proxima Brazil - South America insect-associated habitat - organic material -
SRR17168938 AMPLICON 16S Megistopoda proxima Brazil - South America insect-associated habitat - organic material -
SRR17168939 AMPLICON 16S Megistopoda proxima Brazil - South America insect-associated habitat - organic material -
SRR17168940 AMPLICON 16S Basilia ferruginea Brazil - South America insect-associated habitat - organic material -
SRR17168941 AMPLICON 16S Basilia ferruginea Brazil - South America insect-associated habitat - organic material -
SRR17168942 AMPLICON 16S Basilia ferruginea Brazil - South America insect-associated habitat - organic material -
SRR17168943 AMPLICON 16S Basilia lindolphoi Brazil - South America insect-associated habitat - organic material -
SRR17168944 AMPLICON 16S Basilia lindolphoi Brazil - South America insect-associated habitat - organic material -
SRR17168945 AMPLICON 16S Basilia andersoni Brazil - South America insect-associated habitat - organic material -
SRR17168946 AMPLICON 16S Basilia juquiensis Brazil - South America insect-associated habitat - organic material -
SRR17168947 AMPLICON 16S Paratrichobius longicrus Brazil - South America insect-associated habitat - organic material -
SRR17168948 AMPLICON 16S Paratrichobius longicrus Brazil - South America insect-associated habitat - organic material -
SRR17168949 AMPLICON 16S Paratrichobius longicrus Brazil - South America insect-associated habitat - organic material -
SRR17168950 AMPLICON 16S Basilia juquiensis Brazil - South America insect-associated habitat - organic material -
SRR17168951 AMPLICON 16S Basilia juquiensis Brazil - South America insect-associated habitat - organic material -
SRR17168952 AMPLICON 16S Paratrichobius longicrus Brazil - South America insect-associated habitat - organic material -
SRR17168953 AMPLICON 16S Trichobius joblingi Brazil - South America insect-associated habitat - organic material -
SRR17168954 AMPLICON 16S Aspidoptera falcata Brazil - South America insect-associated habitat - organic material -
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