Amplicon

Our database features a diverse collection of 14,992 amplicon sequencing samples, representing various insect species from multiple geographical regions. Raw sequencing data were retrieved from NCBI, curated manually to ensure quality. Data preprocessing involved quality control and merging with Fastp, primer sequence trimming with Seqtk, and a standardized removal of 20 bp from the 5' ends of both forward and reverse reads. Taxonomic composition was analyzed using QIIME2 and Vsearch. Operational Taxonomic Units (OTUs) were classified with two workflows: QIIME2 utilized a pre-trained Greengenes classifier (gg_2022_10_backbone_full_length.nb.qza), while Vsearch employed the SINTAX algorithm with the Greengenes v13.5 reference database. Results were visualized using Krona for an interactive exploration of taxonomic distributions.

15035 Total Samples

Amplicon Types

Distribution of 16S and ITS sequences

Geographic Distribution

Sample distribution by continent

Amplicons

15035 records

Amplicon records associated with insect symbionts from public databases worldwide.

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Run Assay Type Classification Host Area Env Info Collection Year
SRR13648967 AMPLICON 16S Colocasiomyia_xenalocasia_female_2014 Taiwan - Asia 2014
SRR13648968 AMPLICON 16S Colocasiomyia_xenalocasia_male_2014 Taiwan - Asia 2014
SRR13648969 AMPLICON 16S Colocasiomyia_alocasia_female_2014 Taiwan - Asia 2014
SRR13648970 AMPLICON 16S Colocasiomyia_alocasia_male_2014 Taiwan - Asia 2014
SRR13648973 AMPLICON 16S Colocasiomyia_alocasia_female_2016 Taiwan - Asia 2016
SRR13648974 AMPLICON 16S Colocasiomyia_alocasia_male_2016 Taiwan - Asia 2016
SRR13648975 AMPLICON 16S Colocasiomyia_xenalocasia_female_2016 Taiwan - Asia 2016
SRR13648976 AMPLICON 16S Colocasiomyia_xenalocasia_male_2016 Taiwan - Asia 2016
SRR13648977 AMPLICON 16S Colocasiomyia_alocasia_female_2016 Taiwan - Asia 2016
SRR13648978 AMPLICON 16S Colocasiomyia_xenalocasia_female_2013 Taiwan - Asia 2013
SRR13648979 AMPLICON 16S Colocasiomyia_alocasia_male_2016 Taiwan - Asia 2016
SRR13648982 AMPLICON 16S Colocasiomyia_xenalocasia_male_2015 Taiwan - Asia 2015
SRR13648983 AMPLICON 16S Colocasiomyia_alocasia_female_2015 Taiwan - Asia 2015
SRR13648984 AMPLICON 16S Colocasiomyia_alocasia_male_2015 Taiwan - Asia 2015
SRR13648985 AMPLICON 16S Colocasiomyia_xenalocasia_male_2015 Taiwan - Asia 2015
SRR13648986 AMPLICON 16S Colocasiomyia_alocasia_female_2015 Taiwan - Asia 2015
SRR13648987 AMPLICON 16S Colocasiomyia_alocasia_male_2015 Taiwan - Asia 2015
SRR13648988 AMPLICON 16S Colocasiomyia_xenalocasia_female_2014 Taiwan - Asia 2014
SRR13648989 AMPLICON 16S Colocasiomyia_xenalocasia_male_2013 Taiwan - Asia 2013
SRR13648990 AMPLICON 16S Colocasiomyia_alocasia_female_2013 Taiwan - Asia 2013
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