Insect Symbiont Genomes

A comprehensive collection of insect symbiont genomes from both metagenome-assembled genomes (MAGs), literature records and public databases. Our database currently contains 3648 insect symbionts genomes, providing valuable resources for understanding the genomic features and evolution of insect symbionts.

3895 Total Genomes

Genome Sources

Distribution of genome sources

Genome Quality

Distribution of genome quality metrics

Note: The quality score (QS) defined as 'Completeness − 5 × Contamination' estimated with CheckM

Genome Catalog

3895 records

Catalog of insect symbiont genomes and related information.

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All Metagenome MAGs Literature Record Public Database
Source ID Host Completeness Contamination GTDB Classification Actions
SRR7986799.man.bin.12 Snodgrassella alvi
SRR7986799 Apis mellifera 56.08% 0.85%
d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Snodgrassella;s__Snodgrassella alvi
SRR7986799.man.bin.3 Bartonella_A choladocola
SRR7986799 Apis mellifera 68.10% 0.00%
d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Bartonella_A;s__Bartonella_A choladocola
SRR7986800.man.bin.5 Gilliamella apicola_N
SRR7986800 Apis mellifera 95.86% 0.56%
d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Gilliamella;s__Gilliamella apicola_N
SRR7986801.man.bin.13 Bartonella_A choladocola
SRR7986801 Apis mellifera 77.01% 2.97%
d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Bartonella_A;s__Bartonella_A choladocola
SRR7986801.man.bin.18 Bifidobacterium polysaccharolyticum
SRR7986801 Apis mellifera 81.97% 2.35%
d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium;s__Bifidobacterium polysaccharolyticum
SRR7986801.man.bin.19 Bombilactobacillus mellis
SRR7986801 Apis mellifera 60.48% 0.05%
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Bombilactobacillus;s__Bombilactobacillus mellis
SRR7986801.man.bin.2 Commensalibacter melissae
SRR7986801 Apis mellifera 97.38% 0.66%
d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Commensalibacter;s__Commensalibacter melissae
SRR7986801.man.bin.25 Snodgrassella alvi_G
SRR7986801 Apis mellifera 48.16% 1.14%
d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Snodgrassella;s__Snodgrassella alvi_G
SRR7986801.man.bin.6 Apibacter sp945280365
SRR7986801 Apis mellifera 98.39% 0.00%
d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Weeksellaceae;g__Apibacter;s__Apibacter sp945280365
SRR7986801.man.bin.8 Bombilactobacillus mellifer
SRR7986801 Apis mellifera 71.78% 0.79%
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Bombilactobacillus;s__Bombilactobacillus mellifer
SRR7986802.man.bin.1 Commensalibacter melissae
SRR7986802 Apis mellifera 97.51% 1.16%
d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Commensalibacter;s__Commensalibacter melissae
SRR7986802.man.bin.11
SRR7986802 Apis mellifera 99.72% 3.99%
d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Bartonella_A;s__
SRR7986802.man.bin.12 Snodgrassella alvi
SRR7986802 Apis mellifera 47.56% 0.43%
d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Snodgrassella;s__Snodgrassella alvi
SRR7986802.man.bin.16 Apibacter sp945280365
SRR7986802 Apis mellifera 52.97% 1.08%
d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Weeksellaceae;g__Apibacter;s__Apibacter sp945280365
SRR7986802.man.bin.17 Bartonella_A choladocola
SRR7986802 Apis mellifera 82.88% 4.29%
d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Bartonella_A;s__Bartonella_A choladocola
SRR7986802.man.bin.2 Lactobacillus apis
SRR7986802 Apis mellifera 57.19% 1.50%
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus;s__Lactobacillus apis
SRR7986803.man.bin.7 Gilliamella apicola_N
SRR7986803 Apis mellifera 95.48% 0.56%
d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Gilliamella;s__Gilliamella apicola_N
SRR7986804.man.bin.12 Bombilactobacillus mellis
SRR7986804 Apis mellifera 82.12% 2.28%
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Bombilactobacillus;s__Bombilactobacillus mellis
SRR7986804.man.bin.16 Frischella perrara
SRR7986804 Apis mellifera 96.25% 8.24%
d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Frischella;s__Frischella perrara
SRR7986804.man.bin.2 Commensalibacter melissae
SRR7986804 Apis mellifera 97.01% 0.50%
d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Commensalibacter;s__Commensalibacter melissae
SRR7986804.man.bin.20
SRR7986804 Apis mellifera 54.33% 1.43%
d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Weeksellaceae;g__Apibacter;s__
SRR7986804.man.bin.3 Lactobacillus apis
SRR7986804 Apis mellifera 74.65% 6.54%
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus;s__Lactobacillus apis
SRR7986804.man.bin.9 Snodgrassella alvi_G
SRR7986804 Apis mellifera 49.45% 1.72%
d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Snodgrassella;s__Snodgrassella alvi_G
SRR7986805.man.bin.16 Bombilactobacillus mellis
SRR7986805 Apis mellifera 79.99% 1.81%
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Bombilactobacillus;s__Bombilactobacillus mellis
SRR7986805.man.bin.3 Commensalibacter melissae
SRR7986805 Apis mellifera 63.79% 0.00%
d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Commensalibacter;s__Commensalibacter melissae
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