SRR17686661 - Popillia japonica Newman

Basic Information

Run: SRR17686661

Assay Type: AMPLICON

Biosample: SAMN25145137

Bytes: 40541368

Center Name: PURDUE UNIVERSITY

Classification: 16S

Sequencing Information

Instrument: Illumina MiSeq

Library Layout: PAIRED

Bioproject: PRJNA798077

Quality Control Information

Filter Percentage: 1.0

QC Average Length: -

Retained Reads: 0

Geographic Information

Country: USA

Continent: North America

Location Name: USA

Latitude/Longitude: 42.696356 N 89.059291 W

Sample Information

Host: Popillia japonica Newman

Isolation: -

Biosample Model: -

Collection Date: 2018-08-01

Host Sex: -

Environmental Information

Broad Scale: host organism

Local Scale: organic feature

Medium: insect gut metagenome

Download Files

Analysis Files

OTU Table

Operational Taxonomic Unit table

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OTU Sequences

FASTA file of OTU sequences

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FAPROTAX Report

Functional annotation of Amplicon

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VSEARCH Taxon

VSEARCH taxonomic composition classification

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QIIME Taxon

QIIME2 taxonomic composition classification

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Raw Sequencing Files

Direct download from NCBI SRA
Run ID File Size
SRR17686661
38.7 MB Download

Raw sequencing files are hosted on NCBI SRA. Click the download button to start downloading directly from NCBI servers.

Taxonomic Classification

Functional Annotation

Functional annotations are predicted using FAPROTAX (Functional Annotation of Prokaryotic Taxa). Each number indicates the count of taxa associated with that specific function.

Chemoheterotrophy 120
Aerobic_Chemoheterotrophy 64
Fermentation 55
Animal_Parasites_Or_Symbionts 34
Human_Associated 30
Human_Gut 20
Mammal_Gut 20
Nitrate_Reduction 16
Human_Pathogens_All 11
Aromatic_Compound_Degradation 11
Nitrate_Respiration 7
Nitrogen_Respiration 7
Predatory_Or_Exoparasitic 4
Ureolysis 3
Dark_Oxidation_Of_Sulfur_Compounds 2
Methanol_Oxidation 1
Methylotrophy 1
Nitrogen_Fixation 1
Human_Pathogens_Nosocomia 1
Photosynthetic_Cyanobacteria 1
Oxygenic_Photoautotrophy 1
Photoautotrophy 1
Phototrophy 1
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