0.52 678 678 U 0 unclassified 99.48 129277 1 R 1 root 99.48 129276 0 R1 131567 cellular organisms 99.48 129276 143 D 2 Bacteria 97.09 126176 26 D1 1783272 Terrabacteria group 95.69 124354 102 P 1239 Bacillota 95.41 123993 12456 C 91061 Bacilli 58.50 76023 4095 O 1385 Bacillales 28.84 37483 508 F 186817 Bacillaceae 26.63 34602 873 G 1386 Bacillus 17.97 23350 827 G1 653685 Bacillus subtilis group 12.17 15820 13 G2 1938374 Bacillus amyloliquefaciens group 11.31 14697 14433 S 492670 Bacillus velezensis 0.20 263 263 S1 1385727 Bacillus velezensis NAU-B3 0.00 1 1 S1 1458206 Bacillus velezensis NJN-6 0.85 1110 1107 S 1390 Bacillus amyloliquefaciens 0.00 3 3 S1 1292358 Bacillus amyloliquefaciens KHG19 5.00 6494 5966 S 1423 Bacillus subtilis 0.30 385 337 S1 135461 Bacillus subtilis subsp. subtilis 0.03 45 45 S2 1302650 Bacillus subtilis subsp. subtilis str. BAB-1 0.00 3 3 S2 224308 Bacillus subtilis subsp. subtilis str. 168 0.11 143 143 S1 86029 Bacillus subtilis subsp. natto 0.07 85 85 S 1648923 Bacillus paralicheniformis 0.03 41 41 S 483913 Bacillus inaquosorum 0.03 38 38 S 1452 Bacillus atrophaeus 0.02 29 0 G2 653388 Bacillus mojavensis subgroup 0.02 29 29 S 260554 Bacillus halotolerans 0.01 14 14 S 1402 Bacillus licheniformis 0.00 2 2 S 96241 Bacillus spizizenii 2.94 3826 3826 S 561879 Bacillus safensis 2.66 3462 43 G1 86661 Bacillus cereus group 1.03 1339 1293 S 1396 Bacillus cereus 0.02 27 27 S1 1454382 Bacillus cereus D17 0.01 13 13 S1 1003239 Bacillus cereus C1L 0.00 3 3 S1 288681 Bacillus cereus E33L 0.00 3 3 S1 572264 Bacillus cereus 03BB102 0.95 1236 1179 S 1428 Bacillus thuringiensis 0.03 41 0 S1 29339 Bacillus thuringiensis serovar kurstaki 0.03 41 41 S2 1261129 Bacillus thuringiensis serovar kurstaki str. HD-1 0.01 7 7 S1 1217737 Bacillus thuringiensis HD-789 0.00 6 6 S1 412694 Bacillus thuringiensis str. Al Hakam 0.00 3 3 S1 1423143 Bacillus thuringiensis Bt18247 0.35 453 453 S 1392 Bacillus anthracis 0.20 266 266 S 64104 Bacillus pseudomycoides 0.06 72 72 S 2026186 Bacillus paranthracis 0.03 36 13 S 1405 Bacillus mycoides 0.02 23 23 S1 315730 Bacillus mycoides KBAB4 0.01 16 0 G2 2750818 unclassified Bacillus cereus group 0.01 16 16 S 1892404 Bacillus sp. ABP14 0.00 1 1 S 2026191 Bacillus luti 1.49 1937 0 G1 1792192 Bacillus altitudinis complex 1.49 1937 1937 S 293387 Bacillus altitudinis 0.76 993 1 G1 185979 unclassified Bacillus (in: firmicutes) 0.32 411 411 S 467262 Bacillus sp. T3 0.25 328 328 S 2841656 Bacillus sp. ZHX3 0.08 101 101 S 666686 Bacillus sp. 1NLA3E 0.06 83 83 S 3077323 Bacillus sp. SI2 0.03 45 45 S 2709784 Bacillus sp. KH172YL63 0.01 18 18 S 2874284 Bacillus sp. CRB-7 0.00 6 6 S 1806216 Bacillus sp. RZ2MS9 0.12 161 161 S 1408 Bacillus pumilus 0.65 840 0 G 2675230 Cytobacillus 0.33 433 433 S 665099 Cytobacillus oceanisediminis 0.30 396 396 S 1399 Cytobacillus firmus 0.01 11 11 S 3051614 Cytobacillus pseudoceanisediminis 0.31 407 27 G 2837504 Heyndrickxia 0.29 380 380 S 1398 Heyndrickxia coagulans 0.30 385 0 G 2800373 Priestia 0.27 351 349 S 1404 Priestia megaterium 0.00 2 2 S1 1006007 Priestia megaterium WSH-002 0.03 34 34 S 412384 Priestia aryabhattai 0.11 149 27 G 400634 Lysinibacillus 0.03 45 0 G1 2636778 unclassified Lysinibacillus 0.03 45 45 S 2954544 Lysinibacillus sp. FSL W7-1291 0.03 40 28 S 1421 Lysinibacillus sphaericus 0.01 12 12 S1 444177 Lysinibacillus sphaericus C3-41 0.02 25 25 S 2086577 Lysinibacillus timonensis 0.01 12 12 S 2590012 Lysinibacillus agricola 0.09 114 0 G 2675229 Peribacillus 0.07 97 97 S 264697 Peribacillus muralis 0.01 16 16 S 228899 Peribacillus asahii 0.00 1 1 S 450367 Peribacillus frigoritolerans 0.07 91 0 G 175304 Lentibacillus 0.07 90 0 G1 2614679 unclassified Lentibacillus 0.07 90 90 S 2518176 Lentibacillus sp. CBA3610 0.00 1 1 S 2911514 Lentibacillus daqui 0.04 49 0 G 2685905 Salicibibacter 0.04 49 49 S 2743001 Salicibibacter cibi 0.04 49 22 G 129337 Geobacillus 0.01 18 1 S 33940 Geobacillus thermodenitrificans 0.01 17 17 S1 420246 Geobacillus thermodenitrificans NG80-2 0.00 3 3 S 860353 Geobacillus proteiniphilus 0.00 3 3 S 1921421 Geobacillus genomosp. 3 0.00 2 0 G1 1505648 Geobacillus thermoleovorans group 0.00 2 2 S 33941 Geobacillus thermoleovorans 0.00 1 0 G1 2642459 unclassified Geobacillus 0.00 1 1 S 1233873 Geobacillus sp. GHH01 0.04 48 0 G 2893055 Halalkalibacterium (ex Joshi et al. 2022) 0.04 48 0 S 86665 Halalkalibacterium halodurans 0.04 48 48 S1 272558 Halalkalibacterium halodurans C-125 0.03 42 0 G 2005375 Alkalicoccus 0.03 42 42 S 1667239 Alkalicoccus halolimnae 0.03 36 32 G 182709 Oceanobacillus 0.00 4 4 S 2052660 Oceanobacillus zhaokaii 0.02 25 0 G 2837508 Rossellomorea 0.02 25 25 S 189381 Rossellomorea marisflavi 0.02 24 0 G 1494427 Tepidibacillus 0.02 24 24 S 3131995 Tepidibacillus marianensis 0.02 23 3 G 2675233 Metabacillus 0.01 17 17 S 1535204 Metabacillus endolithicus 0.00 3 2 G1 2675274 unclassified Metabacillus 0.00 1 1 S 2806989 Metabacillus sp. cB07 0.01 18 0 G 45667 Halobacillus 0.01 14 14 S 45668 Halobacillus litoralis 0.00 3 3 S 2932258 Halobacillus shinanisalinarum 0.00 1 1 S 2932257 Halobacillus salinarum 0.01 14 0 G 2675231 Mesobacillus 0.01 14 14 S 285983 Mesobacillus subterraneus 0.01 13 0 G 379065 Caldalkalibacillus 0.01 13 0 S 296745 Caldalkalibacillus thermarum 0.01 13 13 S1 986075 Caldalkalibacillus thermarum TA2.A1 0.01 8 0 G 2785518 Radiobacillus 0.01 8 8 S 2594883 Radiobacillus deserti 0.01 8 0 G 150247 Anoxybacillus 0.01 7 7 G1 2639704 unclassified Anoxybacillus 0.00 1 0 S 33934 Anoxybacillus flavithermus 0.00 1 1 S1 491915 Anoxybacillus flavithermus WK1 0.00 6 0 G 2837506 Niallia 0.00 5 5 S 1397 Niallia circulans 0.00 1 0 G1 2837522 unclassified Niallia 0.00 1 1 S 3082444 Niallia sp. XMNu-256 0.00 5 4 G 2893057 Shouchella 0.00 1 1 S 79880 Shouchella clausii 0.00 4 1 G 459532 Terribacillus 0.00 2 2 S 361277 Terribacillus saccharophilus 0.00 1 0 G1 2636508 unclassified Terribacillus 0.00 1 1 S 2850441 Terribacillus sp. DMT04 0.00 3 2 G 351195 Salimicrobium 0.00 1 0 G1 2619739 unclassified Salimicrobium 0.00 1 1 S 3095364 Salimicrobium sp. PL1-032A 0.00 2 0 G 2675232 Neobacillus 0.00 2 0 G1 2675272 unclassified Neobacillus 0.00 1 1 S 3070676 Neobacillus sp. PS2-9 0.00 1 1 S 3070677 Neobacillus sp. PS3-12 0.00 2 0 G 1433999 Domibacillus 0.00 2 0 G1 2632383 unclassified Domibacillus 0.00 2 2 S 3077789 Domibacillus sp. DTU_2020_1001157_1_SI_ALB_TIR_016 0.00 2 0 G 2804231 Lederbergia 0.00 2 2 S 1467 Lederbergia lenta 0.00 2 0 G 84406 Virgibacillus 0.00 1 1 S 447199 Virgibacillus salarius 0.00 1 0 G1 2620237 unclassified Virgibacillus 0.00 1 1 S 2700081 Virgibacillus sp. MSP4-1 0.00 1 0 G 2837510 Siminovitchia 0.00 1 1 S 254758 Siminovitchia fortis 0.00 1 0 G 1400133 Allobacillus 0.00 1 1 S 570278 Allobacillus halotolerans 0.00 1 0 G 1329200 Fictibacillus 0.00 1 0 G1 2644029 unclassified Fictibacillus 0.00 1 1 S 2991053 Fictibacillus sp. KU28468 0.00 1 0 G 3033930 Fervidibacillus 0.00 1 1 S 2980026 Fervidibacillus albus 22.42 29141 16 F 90964 Staphylococcaceae 21.87 28417 231 G 1279 Staphylococcus 20.29 26362 26326 S 1280 Staphylococcus aureus 0.03 33 33 S1 1229492 Staphylococcus aureus 08BA02176 0.00 3 3 S1 548470 Staphylococcus aureus subsp. aureus MN8 0.92 1193 1193 S 70255 Staphylococcus condimenti 0.20 256 256 S 1290 Staphylococcus hominis 0.16 207 207 S 29378 Staphylococcus arlettae 0.04 48 0 G1 2815305 Staphylococcus intermedius group 0.03 43 43 S 283734 Staphylococcus pseudintermedius 0.00 5 5 S 53344 Staphylococcus delphini 0.03 44 44 S 1282 Staphylococcus epidermidis 0.03 43 43 S 985002 Staphylococcus argenteus 0.01 9 9 S 201828 Staphylococcus casei 0.01 7 7 S 1286 Staphylococcus simulans 0.00 5 5 S 28035 Staphylococcus lugdunensis 0.00 3 1 S 29388 Staphylococcus capitis 0.00 2 2 S1 74703 Staphylococcus capitis subsp. urealyticus 0.00 3 3 S 170573 Staphylococcus pettenkoferi 0.00 2 0 G1 91994 unclassified Staphylococcus 0.00 2 2 S 1715860 Staphylococcus sp. AntiMn-1 0.00 2 2 S 1283 Staphylococcus haemolyticus 0.00 1 1 S 246432 Staphylococcus equorum 0.00 1 1 S 3051183 Staphylococcus hsinchuensis 0.36 464 1 G 2803850 Mammaliicoccus 0.36 462 462 S 1296 Mammaliicoccus sciuri 0.00 1 1 S 71237 Mammaliicoccus vitulinus 0.17 221 0 G 45669 Salinicoccus 0.17 221 0 G1 2628837 unclassified Salinicoccus 0.17 221 221 S 3136731 Salinicoccus sp. Bachu38 0.01 14 0 G 3076173 Macrococcoides 0.01 14 14 S 69966 Macrococcoides caseolyticum 0.01 8 8 G 227979 Jeotgalicoccus 0.00 1 0 G 489909 Nosocomiicoccus 0.00 1 1 S 1232430 Nosocomiicoccus massiliensis 1.73 2244 0 F 186820 Listeriaceae 1.39 1811 86 G 1637 Listeria 0.65 850 850 S 1639 Listeria monocytogenes 0.59 769 0 G1 2642072 unclassified Listeria 0.59 769 769 S 1844999 Listeria sp. PSOL-1 0.07 96 0 S 1638 Listeria ivanovii 0.07 96 0 S1 202751 Listeria ivanovii subsp. ivanovii 0.07 96 96 S2 881621 Listeria ivanovii subsp. ivanovii PAM 55 0.01 8 8 S 1642 Listeria innocua 0.00 2 2 S 1006155 Listeria weihenstephanensis 0.33 433 0 G 2755 Brochothrix 0.33 433 433 S 2756 Brochothrix thermosphacta 1.46 1903 15 F 186822 Paenibacillaceae 0.70 904 18 G 44249 Paenibacillus 0.26 333 329 S 1406 Paenibacillus polymyxa 0.00 4 4 S1 1413214 Paenibacillus polymyxa SQR-21 0.21 277 277 S 562959 Paenibacillus cellulositrophicus 0.07 93 93 S 2509456 Paenibacillus protaetiae 0.03 37 1 G1 185978 unclassified Paenibacillus 0.01 12 12 S 2921709 Paenibacillus sp. FSL W8-0186 0.01 12 12 S 2921361 Paenibacillus sp. FSL E2-0178 0.00 5 5 S 2211212 Paenibacillus sp. DCT19 0.00 4 4 S 2979727 Paenibacillus sp. KS-LC4 0.00 1 1 S 2871175 Paenibacillus sp. DR312 0.00 1 1 S 2975345 Paenibacillus sp. FSL H7-0350 0.00 1 1 S 2921677 Paenibacillus sp. FSL R7-0216 0.02 31 31 S 2565926 Paenibacillus algicola 0.02 27 27 S 682956 Paenibacillus jilunlii 0.02 23 23 S 61624 Paenibacillus mucilaginosus 0.01 16 16 S 79263 Paenibacillus chitinolyticus 0.01 15 15 S 1178515 Paenibacillus swuensis 0.01 11 11 S 2704463 Paenibacillus rhizovicinus 0.01 9 9 S 1333845 Paenibacillus sophorae 0.00 5 5 S 253703 Paenibacillus antarcticus 0.00 3 3 G1 2044880 Paenibacillus sonchi group 0.00 2 2 S 1873425 Paenibacillus tritici 0.00 1 1 S 3050112 Paenibacillus polygoni 0.00 1 1 S 1473112 Paenibacillus guangzhouensis 0.00 1 1 S 1778678 Paenibacillus psychroresistens 0.00 1 1 S 116718 Paenibacillus azoreducens 0.50 645 1 G 329857 Cohnella 0.39 506 506 S 2674991 Cohnella candidum 0.10 136 136 S 2507935 Cohnella abietis 0.00 2 0 G1 2636738 unclassified Cohnella 0.00 2 2 S 1619153 Cohnella sp. LGH 0.25 331 0 F1 85151 Aneurinibacillus group 0.25 331 99 G 55079 Aneurinibacillus 0.17 221 221 S 1500254 Aneurinibacillus soli 0.01 11 0 G1 2642329 unclassified Aneurinibacillus 0.01 11 11 S 3022697 Aneurinibacillus sp. Ricciae_BoGa-3 0.01 8 0 G 55080 Brevibacillus 0.01 7 7 S 45462 Brevibacillus borstelensis 0.00 1 1 S 2895522 Brevibacillus humidisoli 0.41 534 2 F 186818 Planococcaceae 0.30 386 27 G 160795 Ureibacillus 0.22 288 288 S 367743 Ureibacillus thermophilus 0.05 71 71 S 51173 Ureibacillus thermosphaericus 0.05 63 0 G 651660 Paenisporosarcina 0.04 57 57 S 2320858 Paenisporosarcina cavernae 0.00 6 6 S 417367 Paenisporosarcina antarctica 0.05 60 0 G 889388 Chryseomicrobium 0.05 60 0 G1 2625558 unclassified Chryseomicrobium 0.05 60 60 S 2921704 Chryseomicrobium sp. FSL W7-1435 0.01 16 1 G 1372 Planococcus 0.01 15 0 G1 2662419 unclassified Planococcus (in: firmicutes) 0.01 15 15 S 2058136 Planococcus sp. MB-3u-03 0.00 6 5 G 1569 Sporosarcina 0.00 1 1 S 1571 Sporosarcina ureae 0.00 1 0 G 1649 Kurthia 0.00 1 0 G1 2644826 unclassified Kurthia 0.00 1 1 S 1750719 Kurthia sp. 11kri321 0.39 501 0 F 186823 Alicyclobacillaceae 0.38 500 0 G 29330 Alicyclobacillus 0.38 500 500 S 2931921 Alicyclobacillus mengziensis 0.00 1 0 G 1129704 Kyrpidia 0.00 1 1 S 2055160 Kyrpidia spormannii 0.05 66 0 O1 539002 Bacillales incertae sedis 0.05 66 0 O2 539742 Bacillales Family XII. Incertae Sedis 0.05 66 50 G 33986 Exiguobacterium 0.01 16 0 S 132920 Exiguobacterium antarcticum 0.01 16 16 S1 1087448 Exiguobacterium antarcticum B7 0.03 33 0 F 539738 Gemellaceae 0.03 33 1 G 1378 Gemella 0.02 32 32 G1 2624949 unclassified Gemella 0.01 16 0 F 186824 Thermoactinomycetaceae 0.01 10 0 G 1677050 Novibacillus 0.01 10 10 S 1471761 Novibacillus thermophilus 0.00 4 0 G 1348505 Polycladomyces 0.00 4 4 S 1125966 Polycladomyces abyssicola 0.00 1 0 G 2023 Thermoactinomyces 0.00 1 1 S 2026 Thermoactinomyces vulgaris 0.00 1 1 G 1274351 Kroppenstedtia 0.00 4 0 F 3076164 Abyssicoccaceae 0.00 4 0 G 1955413 Abyssicoccus 0.00 4 4 S 1817405 Abyssicoccus albus 0.00 3 0 F 186821 Sporolactobacillaceae 0.00 3 0 G 475230 Pullulanibacillus 0.00 3 0 G1 2640606 unclassified Pullulanibacillus 0.00 3 3 S 3028315 Pullulanibacillus sp. KACC 23026 27.33 35514 2396 O 186826 Lactobacillales 12.10 15726 3 F 81852 Enterococcaceae 11.98 15571 326 G 1350 Enterococcus 6.42 8340 8277 S 1351 Enterococcus faecalis 0.05 63 63 S1 1201292 Enterococcus faecalis ATCC 29212 3.36 4370 4271 S 1352 Enterococcus faecium 0.06 84 84 S1 1344042 Enterococcus faecium T110 0.01 15 15 S1 1328870 Enterococcus faecium UC7251 1.81 2349 2306 S 1354 Enterococcus hirae 0.03 43 43 S1 768486 Enterococcus hirae ATCC 9790 0.07 92 92 S 1353 Enterococcus gallinarum 0.04 57 57 S 37734 Enterococcus casseliflavus 0.03 37 37 S 44008 Enterococcus cecorum 0.06 78 35 G 2737 Vagococcus 0.02 30 0 G1 2648499 unclassified Vagococcus 0.02 30 30 S 3109030 Vagococcus sp. B2T-5 0.01 13 13 S 633807 Vagococcus penaei 0.06 74 8 G 51668 Tetragenococcus 0.04 56 56 S 51669 Tetragenococcus halophilus 0.01 7 7 S 290335 Tetragenococcus koreensis 0.00 3 3 S 526944 Tetragenococcus osmophilus 8.96 11640 896 F 33958 Lactobacillaceae 1.77 2297 0 G 2767886 Levilactobacillus 1.69 2202 2202 S 1580 Levilactobacillus brevis 0.07 95 95 S 2292255 Levilactobacillus suantsaii 1.22 1581 0 G 2767885 Latilactobacillus 1.20 1560 1560 S 1599 Latilactobacillus sakei 0.02 21 21 S 28038 Latilactobacillus curvatus 0.90 1167 2 G 2767842 Lactiplantibacillus 0.55 721 721 S 1589 Lactiplantibacillus pentosus 0.33 432 320 S 1590 Lactiplantibacillus plantarum 0.09 112 112 S1 337330 Lactiplantibacillus plantarum subsp. plantarum 0.01 12 12 S 60520 Lactiplantibacillus paraplantarum 0.78 1019 1011 G 2767893 Lentilactobacillus 0.01 8 1 S 1581 Lentilactobacillus buchneri 0.01 7 0 S1 2737512 Lentilactobacillus buchneri subsp. silagei 0.01 7 7 S2 1071400 Lentilactobacillus buchneri subsp. silagei CD034 0.74 958 30 G 1578 Lactobacillus 0.18 233 233 S 47770 Lactobacillus crispatus 0.13 174 174 S 1587 Lactobacillus helveticus 0.12 154 1 S 1584 Lactobacillus delbrueckii 0.09 111 2 S1 1585 Lactobacillus delbrueckii subsp. bulgaricus 0.07 93 93 S2 321956 Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 0.01 16 16 S2 390333 Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842 = JCM 1002 0.03 36 36 S1 29397 Lactobacillus delbrueckii subsp. lactis 0.00 6 0 S1 83684 Lactobacillus delbrueckii subsp. delbrueckii 0.00 6 6 S2 1423823 Lactobacillus delbrueckii subsp. delbrueckii DSM 20074 = JCM 1012 0.10 124 121 S 1579 Lactobacillus acidophilus 0.00 3 3 S1 272621 Lactobacillus acidophilus NCFM 0.10 124 0 G1 2620435 unclassified Lactobacillus 0.09 121 121 S 2695882 Lactobacillus sp. 3B(2020) 0.00 2 2 S 2983232 Lactobacillus sp. ESL0785 0.00 1 1 S 2594495 Lactobacillus sp. PV034 0.06 81 81 S 147802 Lactobacillus iners 0.02 30 30 S 83683 Lactobacillus amylolyticus 0.00 4 3 S 267818 Lactobacillus kefiranofaciens 0.00 1 1 S1 190906 Lactobacillus kefiranofaciens subsp. kefirgranum 0.00 2 2 S 2269374 Lactobacillus terrae 0.00 2 2 S 2012495 Lactobacillus panisapium 0.63 815 120 G 2767887 Ligilactobacillus 0.40 518 487 S 1624 Ligilactobacillus salivarius 0.02 31 31 S1 1194971 Ligilactobacillus salivarius str. Ren 0.07 85 85 S 89059 Ligilactobacillus acidipiscis 0.04 46 46 S 1605 Ligilactobacillus animalis 0.03 34 34 S 1606 Ligilactobacillus aviarius 0.01 8 8 S 1601 Ligilactobacillus agilis 0.00 4 2 S 1623 Ligilactobacillus ruminis 0.00 2 2 S1 1069534 Ligilactobacillus ruminis ATCC 27782 0.50 646 0 G 2930384 Periweissella 0.50 646 646 S 2506420 Periweissella cryptocerci 0.48 621 67 G 2759736 Lacticaseibacillus 0.26 338 338 S 3025672 Lacticaseibacillus pabuli 0.13 166 50 S 1597 Lacticaseibacillus paracasei 0.09 115 115 S1 113557 Lacticaseibacillus paracasei subsp. tolerans 0.00 1 0 S1 47714 Lacticaseibacillus paracasei subsp. paracasei 0.00 1 1 S2 537973 Lacticaseibacillus paracasei subsp. paracasei 8700:2 0.04 48 48 S 47715 Lacticaseibacillus rhamnosus 0.00 2 2 S 171523 Lacticaseibacillus pantheris 0.30 389 8 G 2742598 Limosilactobacillus 0.22 290 290 S 1598 Limosilactobacillus reuteri 0.07 87 87 S 1613 Limosilactobacillus fermentum 0.00 4 4 S 227942 Limosilactobacillus gastricus 0.26 337 9 G 2767881 Fructilactobacillus 0.24 318 318 S 1625 Fructilactobacillus sanfranciscensis 0.01 9 9 S 1614 Fructilactobacillus fructivorans 0.00 1 1 S 2940300 Fructilactobacillus hinvesii 0.17 223 55 G 2767877 Apilactobacillus 0.13 167 167 S 2923364 Apilactobacillus apisilvae 0.00 1 1 S 1218495 Apilactobacillus apinorum 0.13 166 11 G 2767878 Bombilactobacillus 0.12 155 155 S 1303590 Bombilactobacillus bombi 0.13 163 57 G 1253 Pediococcus 0.04 57 57 S 480391 Pediococcus argentinicus 0.04 48 48 S 1255 Pediococcus pentosaceus 0.00 1 0 G1 1670797 Pediococcus acidilactici group 0.00 1 1 S 1254 Pediococcus acidilactici 0.09 113 107 G 1243 Leuconostoc 0.00 4 4 S 1246 Leuconostoc lactis 0.00 2 2 S 1252 Leuconostoc carnosum 0.06 72 0 G 2767874 Acetilactobacillus 0.06 72 72 S 1720083 Acetilactobacillus jinshanensis 0.04 57 0 G 2767892 Secundilactobacillus 0.04 52 52 S 176292 Secundilactobacillus malefermentans 0.00 5 5 S 240427 Secundilactobacillus paracollinoides 0.02 31 6 G 2767889 Loigolactobacillus 0.02 21 19 S 1610 Loigolactobacillus coryniformis 0.00 2 0 S1 115542 Loigolactobacillus coryniformis subsp. torquens 0.00 2 2 S2 1423822 Loigolactobacillus coryniformis subsp. torquens DSM 20004 = KCTC 3535 0.00 4 4 S 375175 Loigolactobacillus backii 0.02 25 0 G 2767882 Furfurilactobacillus 0.02 25 25 S 231049 Furfurilactobacillus rossiae 0.02 22 13 G 46255 Weissella 0.00 4 4 S 155866 Weissella soli 0.00 2 2 S 1249 Weissella paramesenteroides 0.00 2 2 S 137591 Weissella cibaria 0.00 1 1 S 759620 Weissella ceti 0.01 15 3 G 2767879 Companilactobacillus 0.01 8 8 S 1847728 Companilactobacillus allii 0.00 3 3 S 938155 Companilactobacillus futsaii 0.00 1 0 S 1602 Companilactobacillus alimentarius 0.00 1 1 S1 1423720 Companilactobacillus alimentarius DSM 20249 0.01 10 10 G 3118928 Xylocopilactobacillus 0.00 6 0 G 2767884 Lapidilactobacillus 0.00 6 6 S 51664 Lapidilactobacillus dextrinicus 0.00 6 5 G 2767888 Liquorilactobacillus 0.00 1 1 S 82688 Liquorilactobacillus nagelii 0.00 3 0 G 2767891 Schleiferilactobacillus 0.00 3 3 S 304207 Schleiferilactobacillus harbinensis 0.00 2 0 G 2767876 Amylolactobacillus 0.00 2 0 S 1603 Amylolactobacillus amylophilus 0.00 2 2 S1 1423721 Amylolactobacillus amylophilus DSM 20533 = JCM 1125 3.00 3893 9 F 1300 Streptococcaceae 2.77 3600 566 G 1301 Streptococcus 1.04 1353 1353 S 1811193 Streptococcus pantholopis 0.40 516 274 S 1308 Streptococcus thermophilus 0.13 164 164 S1 322159 Streptococcus thermophilus LMD-9 0.06 78 78 S1 767463 Streptococcus thermophilus ND03 0.24 307 276 S 1311 Streptococcus agalactiae 0.02 31 31 S1 1203670 Streptococcus agalactiae GD201008-001 0.18 232 220 S 1314 Streptococcus pyogenes 0.01 12 0 S1 301449 Streptococcus pyogenes serotype M5 0.01 12 12 S2 160491 Streptococcus pyogenes str. Manfredo 0.17 217 217 S 1310 Streptococcus sobrinus 0.08 109 109 S 1346 Streptococcus iniae 0.06 73 19 S 1313 Streptococcus pneumoniae 0.04 52 52 S1 869311 Streptococcus pneumoniae SPN032672 0.00 2 2 S1 1159083 Streptococcus pneumoniae PCS8235 0.04 58 58 S 1345 Streptococcus ferus 0.04 49 49 S 1111760 Streptococcus troglodytae 0.03 45 0 G1 119603 Streptococcus dysgalactiae group 0.03 45 42 S 1334 Streptococcus dysgalactiae 0.00 2 2 S1 119602 Streptococcus dysgalactiae subsp. equisimilis 0.00 1 1 S1 99822 Streptococcus dysgalactiae subsp. dysgalactiae 0.03 34 34 S 68892 Streptococcus infantis 0.01 12 12 G1 2608887 unclassified Streptococcus 0.01 7 7 S 1304 Streptococcus salivarius 0.00 6 0 G1 671232 Streptococcus anginosus group 0.00 6 6 S 1328 Streptococcus anginosus 0.00 5 5 S 2021971 Streptococcus respiraculi 0.00 4 4 S 82348 Streptococcus pluranimalium 0.00 4 4 S 2173853 Streptococcus chenjunshii 0.00 2 2 S 2686210 Streptococcus ruminicola 0.00 1 1 S 1307 Streptococcus suis 0.21 278 39 G 1357 Lactococcus 0.14 184 184 S 1359 Lactococcus cremoris 0.03 39 0 S 1363 Lactococcus garvieae 0.03 39 39 S1 1890280 Lactococcus garvieae subsp. garvieae 0.01 11 11 S 1358 Lactococcus lactis 0.00 4 4 S 1366 Lactococcus raffinolactis 0.00 1 1 S 1151742 Lactococcus taiwanensis 0.00 6 0 G 1930830 Floricoccus 0.00 6 6 S 1859475 Floricoccus penangensis 1.11 1448 118 F 186827 Aerococcaceae 0.58 754 0 G 2862144 Ruoffia 0.58 754 754 S 87458 Ruoffia tabacinasalis 0.28 363 131 G 1375 Aerococcus 0.13 166 166 S 87541 Aerococcus christensenii 0.03 35 35 S 3078812 Aerococcus tenax 0.02 28 28 S 128944 Aerococcus urinaehominis 0.00 2 2 S 2976810 Aerococcus mictus 0.00 1 1 S 1376 Aerococcus urinae 0.16 202 0 G 66831 Facklamia 0.16 202 202 S 178214 Facklamia hominis 0.01 7 0 G 13075 Globicatella 0.01 7 7 S 13076 Globicatella sanguinis 0.00 2 0 G 89092 Ignavigranum 0.00 2 2 S 89093 Ignavigranum ruoffiae 0.00 1 0 G 2689587 Suicoccus 0.00 1 1 S 2036206 Suicoccus acidiformans 0.00 1 0 G 2761542 Fundicoccus 0.00 1 1 S 2969821 Fundicoccus culcitae 0.32 411 71 F 186828 Carnobacteriaceae 0.15 197 0 G 117563 Granulicatella 0.11 149 149 S 137732 Granulicatella elegans 0.04 48 48 S 46124 Granulicatella adiacens 0.06 82 0 G 82800 Desemzia 0.06 82 82 S 82801 Desemzia incerta 0.02 31 14 G 2747 Carnobacterium 0.01 15 1 S 2751 Carnobacterium maltaromaticum 0.01 14 14 S1 1234679 Carnobacterium maltaromaticum LMA28 0.00 2 2 G1 257487 unclassified Carnobacterium 0.01 17 0 G 191769 Marinilactibacillus 0.01 17 0 G1 2632303 unclassified Marinilactibacillus 0.01 17 17 S 1911586 Marinilactibacillus sp. 15R 0.01 7 0 G 29393 Dolosigranulum 0.01 7 7 S 29394 Dolosigranulum pigrum 0.00 4 0 G 82802 Trichococcus 0.00 4 0 G1 189664 environmental samples 0.00 4 4 S 189665 uncultured Trichococcus sp. 0.00 2 2 G 1470540 Jeotgalibaca 0.18 236 8 C 186801 Clostridia 0.15 197 3 O 186802 Eubacteriales 0.10 126 0 O1 538999 Eubacteriales incertae sedis 0.09 122 0 G 1392389 Intestinimonas 0.09 122 122 S 1297617 Intestinimonas butyriciproducens 0.00 4 0 F 539000 Clostridiales Family XVII. Incertae Sedis 0.00 4 4 G 73918 Thermaerobacter 0.02 22 2 F 31979 Clostridiaceae 0.02 20 3 G 1485 Clostridium 0.01 14 14 S 1502 Clostridium perfringens 0.00 1 1 S 1491 Clostridium botulinum 0.00 1 1 S 29341 Clostridium argentinense 0.00 1 0 S 217159 Clostridium carboxidivorans 0.00 1 1 S1 536227 Clostridium carboxidivorans P7 0.02 22 5 F 216572 Oscillospiraceae 0.01 9 0 G 459786 Oscillibacter 0.01 9 9 S 2763056 Oscillibacter hominis 0.00 6 2 G 1263 Ruminococcus 0.00 4 4 S 2564099 Ruminococcus bovis 0.00 1 0 G 946234 Flavonifractor 0.00 1 1 S 292800 Flavonifractor plautii 0.00 1 0 G 1508657 Ruminiclostridium 0.00 1 0 S 29362 Ruminiclostridium papyrosolvens 0.00 1 1 S1 588581 Ruminiclostridium papyrosolvens DSM 2782 0.01 9 0 F 2867375 Desulfallaceae 0.01 9 0 G 2867376 Desulfoscipio 0.01 9 0 G1 2867378 unclassified Desulfoscipio 0.01 9 9 S 3144975 Desulfoscipio sp. XC116 0.01 8 0 F 186807 Peptococcaceae 0.01 8 0 G 2916693 Desulforamulus 0.01 8 8 S 1833852 Desulforamulus ferrireducens 0.00 3 0 F 3046368 Aristaeellaceae 0.00 3 3 G 3046369 Aristaeella 0.00 2 2 F 3082771 Acutalibacteraceae 0.00 1 1 F 31984 Heliobacteriaceae 0.00 1 0 F 2937909 Desulfitobacteriaceae 0.00 1 1 G 56112 Dehalobacter 0.01 17 0 O 53433 Halanaerobiales 0.01 17 0 F 53434 Halobacteroidaceae 0.01 17 0 G 42417 Halobacteroides 0.01 17 0 S 42422 Halobacteroides halobius 0.01 17 17 S1 748449 Halobacteroides halobius DSM 5150 0.01 8 0 O 3082720 Peptostreptococcales 0.01 7 2 F 186804 Peptostreptococcaceae 0.00 4 0 G 1849822 Paraclostridium 0.00 4 4 S 1505 Paraclostridium sordellii 0.00 1 0 G 1870884 Clostridioides 0.00 1 1 S 1496 Clostridioides difficile 0.00 1 0 F 3118655 Filifactoraceae 0.00 1 0 G 44259 Filifactor 0.00 1 0 S 143361 Filifactor alocis 0.00 1 1 S1 546269 Filifactor alocis ATCC 35896 0.00 5 0 O 3085636 Lachnospirales 0.00 4 1 F 186803 Lachnospiraceae 0.00 1 0 G 2997360 Anaeropeptidivorans 0.00 1 1 S 2934315 Anaeropeptidivorans aminofermentans 0.00 1 0 G 2719231 Lacrimispora 0.00 1 0 S 29370 Lacrimispora sphenoides 0.00 1 1 S1 1297793 Lacrimispora sphenoides JCM 1415 0.00 1 0 G 572511 Blautia 0.00 1 0 G1 2648079 unclassified Blautia 0.00 1 1 S 2479767 Blautia sp. SC05B48 0.00 1 0 F 3018741 Cellulosilyticaceae 0.00 1 1 G 698776 Cellulosilyticum 0.00 1 0 O 3039167 Moorellales 0.00 1 0 F 2748673 Zhaonellaceae 0.00 1 0 G 2748674 Zhaonella 0.00 1 1 S 2528593 Zhaonella formicivorans 0.01 11 0 C 526524 Erysipelotrichia 0.01 11 0 O 526525 Erysipelotrichales 0.01 11 0 F 128827 Erysipelotrichaceae 0.01 10 0 G 1918536 Longicatena 0.01 10 10 S 1796635 Longicatena caecimuris 0.00 1 0 G 1647 Erysipelothrix 0.00 1 1 S 1648 Erysipelothrix rhusiopathiae 0.01 8 0 C 909932 Negativicutes 0.01 7 0 O 909929 Selenomonadales 0.00 6 0 F 1843490 Sporomusaceae 0.00 4 0 G 81463 Anaeromusa 0.00 4 0 G1 673272 environmental samples 0.00 4 4 S 673273 uncultured Anaeromusa sp. 0.00 2 0 G 2093783 Methylomusa 0.00 2 2 S 1930071 Methylomusa anaerophila 0.00 1 0 F 1843491 Selenomonadaceae 0.00 1 1 G 158846 Megamonas 0.00 1 0 O 1843489 Veillonellales 0.00 1 0 F 31977 Veillonellaceae 0.00 1 1 G 39948 Dialister 0.00 2 0 P1 33974 Bacillota sensu stricto incertae sedis 0.00 2 0 G 1930845 Ndongobacter 0.00 2 2 S 1871025 Ndongobacter massiliensis 0.00 2 0 C 1676648 Limnochordia 0.00 2 0 O 1676649 Limnochordales 0.00 2 0 F 1676650 Limnochordaceae 0.00 2 2 G 1676651 Limnochorda 1.36 1770 0 P 201174 Actinomycetota 1.36 1766 8 C 1760 Actinomycetes 1.32 1712 3 O 85007 Mycobacteriales 1.29 1681 0 F 1653 Corynebacteriaceae 1.29 1681 97 G 1716 Corynebacterium 1.15 1493 0 S 1032851 Corynebacterium nuruki 1.15 1493 1493 S1 863239 Corynebacterium nuruki S6-4 0.01 17 17 S 161895 Corynebacterium phocae 0.01 10 0 S 441501 Corynebacterium massiliense 0.01 10 10 S1 1121364 Corynebacterium massiliense DSM 45435 0.01 7 0 S 575200 Corynebacterium maris 0.01 7 7 S1 1224163 Corynebacterium maris DSM 45190 0.00 6 0 S 1718 Corynebacterium glutamicum 0.00 6 6 S1 1079988 Corynebacterium glutamicum ATCC 14067 0.00 6 6 S 1737425 Corynebacterium provencense 0.00 6 6 S 108486 Corynebacterium falsenii 0.00 6 6 S 38284 Corynebacterium accolens 0.00 4 4 S 2080740 Corynebacterium yudongzhengii 0.00 4 0 G1 2624378 unclassified Corynebacterium 0.00 4 4 S 1487956 Corynebacterium sp. ATCC 6931 0.00 3 3 S 2055947 Corynebacterium heidelbergense 0.00 3 3 S 679663 Corynebacterium canis 0.00 3 0 S 1230998 Corynebacterium frankenforstense 0.00 3 3 S1 1437875 Corynebacterium frankenforstense DSM 45800 0.00 3 3 S 1719 Corynebacterium pseudotuberculosis 0.00 2 0 S 1727 Corynebacterium variabile 0.00 2 2 S1 858619 Corynebacterium variabile DSM 44702 0.00 2 2 S 61592 Corynebacterium durum 0.00 2 0 S 227319 Corynebacterium ciconiae 0.00 2 2 S1 1121356 Corynebacterium ciconiae DSM 44920 0.00 1 1 S 1758466 Corynebacterium faecale 0.00 1 1 S 571915 Corynebacterium mustelae 0.00 1 0 S 203263 Corynebacterium aquilae 0.00 1 1 S1 1431546 Corynebacterium aquilae DSM 44791 0.00 1 1 S 191610 Corynebacterium atypicum 0.00 1 1 S 43768 Corynebacterium matruchotii 0.00 1 1 S 43771 Corynebacterium urealyticum 0.00 1 1 S 2768834 Corynebacterium zhongnanshanii 0.01 15 0 F 2805586 Lawsonellaceae 0.01 15 0 G 1847725 Lawsonella 0.01 15 15 S 1528099 Lawsonella clevelandensis 0.01 7 0 F 85025 Nocardiaceae 0.00 4 4 G 1827 Rhodococcus 0.00 2 0 G 2979332 Prescottella 0.00 2 2 S 43767 Prescottella equi 0.00 1 0 G 1817 Nocardia 0.00 1 1 S 37332 Nocardia seriolae 0.00 4 0 F 85029 Dietziaceae 0.00 4 4 G 37914 Dietzia 0.00 2 0 F 1762 Mycobacteriaceae 0.00 2 2 G 1763 Mycobacterium 0.02 27 5 O 85006 Micrococcales 0.01 8 0 F 85019 Brevibacteriaceae 0.01 8 8 G 1696 Brevibacterium 0.01 8 6 F 85023 Microbacteriaceae 0.00 1 0 G 1857011 Lysinibacter 0.00 1 0 G1 2619652 unclassified Lysinibacter 0.00 1 1 S 3031408 Lysinibacter sp. HNR 0.00 1 0 F1 1655488 Luna cluster 0.00 1 1 F2 1655489 Luna-1 subcluster 0.00 4 2 F 1268 Micrococcaceae 0.00 2 0 G 32207 Rothia 0.00 2 2 S 43675 Rothia mucilaginosa 0.00 1 0 F 85016 Cellulomonadaceae 0.00 1 0 G 1707 Cellulomonas 0.00 1 0 G1 2620175 unclassified Cellulomonas 0.00 1 1 S 2003551 Cellulomonas sp. PSBB021 0.00 1 0 F 2805590 Ornithinimicrobiaceae 0.00 1 1 G 125287 Ornithinimicrobium 0.00 6 0 O 85011 Kitasatosporales 0.00 6 1 F 2062 Streptomycetaceae 0.00 5 1 G 1883 Streptomyces 0.00 2 0 G1 2593676 unclassified Streptomyces 0.00 1 1 S 2099584 Streptomyces sp. ICC4 0.00 1 1 S 2933779 Streptomyces sp. WAC00303 0.00 1 0 G1 629295 Streptomyces griseus group 0.00 1 0 G2 1482561 Streptomyces anulatus subgroup 0.00 1 1 S 1892 Streptomyces anulatus 0.00 1 1 S 35621 Streptomyces mobaraensis 0.00 4 1 O 85009 Propionibacteriales 0.00 3 1 F 31957 Propionibacteriaceae 0.00 2 2 G 29404 Microlunatus 0.00 2 0 O 85010 Pseudonocardiales 0.00 2 1 F 2070 Pseudonocardiaceae 0.00 1 1 G 1847 Pseudonocardia 0.00 2 0 O 2037 Actinomycetales 0.00 2 1 F 2049 Actinomycetaceae 0.00 1 0 G 2888879 Nanchangia 0.00 1 1 S 2692125 Nanchangia anserum 0.00 2 0 O 622450 Actinopolysporales 0.00 2 0 F 622451 Actinopolysporaceae 0.00 2 0 G 1849 Actinopolyspora 0.00 2 2 S 414996 Actinopolyspora erythraea 0.00 1 0 O 85004 Bifidobacteriales 0.00 1 0 F 31953 Bifidobacteriaceae 0.00 1 1 G 1678 Bifidobacterium 0.00 1 0 O 85008 Micromonosporales 0.00 1 0 F 28056 Micromonosporaceae 0.00 1 0 G 1873 Micromonospora 0.00 1 1 S 47872 Micromonospora purpureochromogenes 0.00 1 0 O 2039638 Candidatus Nanopelagicales 0.00 1 0 F 2162846 Candidatus Nanopelagicaceae 0.00 1 0 G 622681 Candidatus Planktophila 0.00 1 1 S 1884913 Candidatus Planktophila lacus 0.00 3 0 C 84992 Acidimicrobiia 0.00 3 0 O 84993 Acidimicrobiales 0.00 3 0 F 633392 Iamiaceae 0.00 3 0 G 467975 Iamia 0.00 3 3 S 467976 Iamia majanohamensis 0.00 1 0 C 1497346 Thermoleophilia 0.00 1 0 O 588673 Solirubrobacterales 0.00 1 0 F 2600303 Baekduiaceae 0.00 1 0 G 3231543 Svornostia 0.00 1 1 S 2898438 Svornostia abyssi 0.02 21 5 P 544448 Mycoplasmatota 0.01 11 0 C 31969 Mollicutes 0.00 6 0 O 186328 Entomoplasmatales 0.00 6 0 F 2131 Spiroplasmataceae 0.00 6 2 G 2132 Spiroplasma 0.00 4 0 S 301585 Spiroplasma platyhelix 0.00 4 4 S1 1276218 Spiroplasma platyhelix PALS-1 0.00 3 0 O 2085 Mycoplasmatales 0.00 2 0 F 2092 Mycoplasmataceae 0.00 2 0 G 2093 Mycoplasma 0.00 1 0 G1 2683645 unclassified Mycoplasma 0.00 1 1 S 1749074 Mycoplasma sp. (ex Biomphalaria glabrata) 0.00 1 0 G1 656088 Mycoplasma mycoides group 0.00 1 0 S 2095 Mycoplasma capricolum 0.00 1 1 S1 40480 Mycoplasma capricolum subsp. capripneumoniae 0.00 1 0 O1 1665628 unclassified Mycoplasmatales 0.00 1 1 S 1609546 endosymbiont DhMRE of Dentiscutata heterogama 0.00 2 0 O 186329 Acholeplasmatales 0.00 2 0 F 2146 Acholeplasmataceae 0.00 2 2 G 33926 Candidatus Phytoplasma 0.00 5 0 O 2790996 Mycoplasmoidales 0.00 5 0 F 2790998 Mycoplasmoidaceae 0.00 3 0 G 2791001 Malacoplasma 0.00 3 0 S 28227 Malacoplasma penetrans 0.00 3 3 S1 272633 Malacoplasma penetrans HF-2 0.00 2 2 G 2995234 Mycoplasmoides 0.00 4 0 D2 1798711 Cyanobacteriota/Melainabacteria group 0.00 4 0 P 1117 Cyanobacteriota 0.00 4 0 C 3028117 Cyanophyceae 0.00 2 0 O 1161 Nostocales 0.00 1 0 F 1162 Nostocaceae 0.00 1 0 G 1177 Nostoc 0.00 1 0 G1 2593658 unclassified Nostoc 0.00 1 1 S 2914041 Nostoc sp. UHCC 0870 0.00 1 0 F 2661849 Calotrichaceae 0.00 1 0 G 1186 Calothrix 0.00 1 1 G1 2619626 unclassified Calothrix 0.00 1 0 O 307595 Gloeobacterales 0.00 1 0 F 1890422 Gloeobacteraceae 0.00 1 1 G 33071 Gloeobacter 0.00 1 0 C1 1301283 Oscillatoriophycideae 0.00 1 0 O 1118 Chroococcales 0.00 1 0 F 2815910 Geminocystaceae 0.00 1 0 G 669357 Geminocystis 0.00 1 0 G1 2625037 unclassified Geminocystis 0.00 1 1 S 1615909 Geminocystis sp. NIES-3708 0.00 1 0 P 200795 Chloroflexota 0.00 1 0 C 32061 Chloroflexia 0.00 1 0 O 3139175 Candidatus Chloroheliales 0.00 1 0 F 3139177 Candidatus Chloroheliaceae 0.00 1 0 G 3139173 Candidatus Chlorohelix 0.00 1 1 S 3003348 Candidatus Chlorohelix allophototropha 2.26 2933 31 P 1224 Pseudomonadota 1.77 2298 76 C 28211 Alphaproteobacteria 1.59 2067 7 O 204441 Rhodospirillales 1.58 2049 184 F 433 Acetobacteraceae 1.31 1701 603 G 434 Acetobacter 0.79 1024 1024 S 1076596 Acetobacter persici 0.04 49 49 S 2592655 Acetobacter vaccinii 0.01 12 0 G1 2628570 unclassified Acetobacter 0.01 12 12 S 3157859 Acetobacter sp. A11-2 0.01 11 11 S 65959 Acetobacter pomorum 0.00 2 0 G1 151157 Acetobacter subgen. Acetobacter 0.00 2 2 S 435 Acetobacter aceti 0.03 39 0 G 1079922 Commensalibacter 0.03 39 39 S 2070537 Commensalibacter melissae 0.02 25 0 G 3027666 Aristophania 0.02 25 25 S 2697033 Aristophania vespae 0.02 23 1 G 125216 Roseomonas 0.02 21 21 S 2768162 Roseomonas haemaphysalidis 0.00 1 1 S 1750527 Roseomonas fluvialis 0.02 21 0 G 504465 Rhodovastum 0.02 21 21 S 504468 Rhodovastum atsumiense 0.01 11 9 G 1602345 Parasaccharibacter 0.00 2 0 G1 2626400 unclassified Parasaccharibacter 0.00 2 2 S 2268025 Parasaccharibacter sp. TMW 2.1888 0.01 10 3 G 441 Gluconobacter 0.00 6 0 S 442 Gluconobacter oxydans 0.00 6 6 S1 1288313 Gluconobacter oxydans DSM 3504 0.00 1 1 S 318683 Gluconobacter albidus 0.01 10 0 G 364409 Granulibacter 0.01 10 10 S 364410 Granulibacter bethesdensis 0.01 7 0 G 3097638 Candidatus Kirkpatrickella 0.01 7 7 S 2984322 Candidatus Kirkpatrickella diaphorinae 0.00 6 4 G 1434011 Komagataeibacter 0.00 1 1 S 65958 Komagataeibacter oboediens 0.00 1 1 S 265959 Komagataeibacter saccharivorans 0.00 6 0 G 50709 Acidocella 0.00 6 0 G1 2648610 unclassified Acidocella 0.00 6 6 S 2697363 Acidocella sp. MX-AZ03 0.00 2 0 G 2811380 Entomobacter 0.00 2 2 S 2762277 Entomobacter blattae 0.00 2 0 G 2804525 Lichenicola 0.00 2 2 S 1484109 Lichenicola cladoniae 0.00 1 0 G 91914 Asaia 0.00 1 0 S 91915 Asaia bogorensis 0.00 1 1 S1 1231624 Asaia bogorensis NBRC 16594 0.00 1 0 G 512381 Acidisoma 0.00 1 0 G1 2634065 unclassified Acidisoma 0.00 1 1 S 3040935 Acidisoma sp. PAMC 29798 0.00 3 0 F 2844601 Stellaceae 0.00 3 0 G 93 Stella 0.00 3 3 S 94 Stella humosa 0.00 3 0 F 3031144 Dongiaceae 0.00 3 2 G 2705399 Hypericibacter 0.00 1 1 S 2602016 Hypericibacter adhaerens 0.00 2 0 F 41295 Rhodospirillaceae 0.00 1 0 G 1231242 Ferrovibrio 0.00 1 1 S 2594003 Ferrovibrio terrae 0.00 1 0 G 1263978 Candidatus Endolissoclinum 0.00 1 0 S 1263979 Candidatus Endolissoclinum faulkneri 0.00 1 1 S1 1193729 Candidatus Endolissoclinum faulkneri L2 0.00 2 0 F 2829815 Azospirillaceae 0.00 1 1 G 191 Azospirillum 0.00 1 1 G 204447 Skermanella 0.00 1 0 F 2690195 Elioraeaceae 0.00 1 0 G 457933 Elioraea 0.00 1 1 S 2843330 Elioraea tepida 0.05 67 1 O 766 Rickettsiales 0.03 42 1 F 942 Anaplasmataceae 0.03 40 0 F1 952 Wolbachieae 0.03 40 1 G 953 Wolbachia 0.03 37 1 G1 2640676 unclassified Wolbachia 0.02 31 31 S 375919 Wolbachia endosymbiont of Drosophila pseudotakahashii 0.00 4 4 S 3080329 Wolbachia endosymbiont of Drosophila aff. chauvacae BK-2020 0.00 1 1 S 3066201 Wolbachia endosymbiont (group A) of Lasioglossum fulvicorne 0.00 2 2 S 955 Wolbachia pipientis 0.00 1 1 G 768 Anaplasma 0.02 24 0 F 775 Rickettsiaceae 0.02 24 10 F1 33988 Rickettsieae 0.01 12 0 G 780 Rickettsia 0.01 8 0 G1 114295 unclassified Rickettsia 0.01 8 8 S 3066251 Rickettsia endosymbiont of Polydrusus tereticollis 0.00 3 0 G1 114277 spotted fever group 0.00 1 0 S 786 Rickettsia akari 0.00 1 1 S1 293614 Rickettsia akari str. Hartford 0.00 1 0 S 33991 Rickettsia montanensis 0.00 1 1 S1 1105114 Rickettsia montanensis str. OSU 85-930 0.00 1 1 S 35790 Rickettsia japonica 0.00 1 0 G1 1129742 belli group 0.00 1 1 S 788 Rickettsia canadensis 0.00 1 0 G 69474 Orientia 0.00 1 1 S 784 Orientia tsutsugamushi 0.00 1 0 G 2996317 Candidatus Tisiphia 0.00 1 0 G1 2996318 unclassified Candidatus Tisiphia 0.00 1 1 S 3066262 Candidatus Tisiphia endosymbiont of Beris chalybata 0.02 32 3 O 356 Hyphomicrobiales 0.01 9 0 F 82115 Rhizobiaceae 0.01 7 1 F1 227290 Rhizobium/Agrobacterium group 0.00 4 0 G 1612611 Pararhizobium 0.00 4 2 G1 2643050 unclassified Pararhizobium 0.00 2 2 S 3067903 Pararhizobium sp. IMCC21322 0.00 1 0 G 357 Agrobacterium 0.00 1 0 G1 1183400 Agrobacterium tumefaciens complex 0.00 1 1 S 358 Agrobacterium tumefaciens 0.00 1 0 G 1903858 Pseudorhizobium 0.00 1 1 S 1335061 Pseudorhizobium flavum 0.00 1 0 G 34019 Liberibacter 0.00 1 1 S 34021 Candidatus Liberibacter asiaticus 0.00 1 0 F1 227292 Sinorhizobium/Ensifer group 0.00 1 0 G 28105 Sinorhizobium 0.00 1 1 S 382 Sinorhizobium meliloti 0.01 7 0 F 772 Bartonellaceae 0.01 7 0 G 773 Bartonella 0.01 7 7 S 2267275 Bartonella krasnovii 0.00 3 0 F 41294 Nitrobacteraceae 0.00 3 0 G 1395974 Tardiphaga 0.00 3 3 S 340268 Tardiphaga alba 0.00 3 0 F 2813035 Parvibaculaceae 0.00 3 0 G 2838250 Kaustia 0.00 3 3 S 2593653 Kaustia mangrovi 0.00 2 0 F 45401 Hyphomicrobiaceae 0.00 2 2 G 81 Hyphomicrobium 0.00 2 0 O1 119042 Hyphomicrobiales incertae sedis 0.00 2 0 G 212791 Enhydrobacter 0.00 2 0 G1 2632691 unclassified Enhydrobacter 0.00 2 2 S 1894999 Enhydrobacter sp. 0.00 1 0 F 2831100 Boseaceae 0.00 1 1 G 85413 Bosea 0.00 1 0 F 69277 Phyllobacteriaceae 0.00 1 0 G 31988 Aminobacter 0.00 1 0 G1 2644704 unclassified Aminobacter 0.00 1 1 S 2774562 Aminobacter sp. SR38 0.00 1 0 F 335928 Xanthobacteraceae 0.00 1 0 G 204476 Labrys 0.00 1 0 G1 2688601 unclassified Labrys (in: a-proteobacteria) 0.00 1 1 S 2789216 Labrys sp. KNU-23 0.01 18 0 O 204458 Caulobacterales 0.01 18 0 F 76892 Caulobacteraceae 0.01 11 11 G 41275 Brevundimonas 0.01 7 6 G 76890 Asticcacaulis 0.00 1 0 G1 2628350 unclassified Asticcacaulis 0.00 1 1 S 3157666 Asticcacaulis sp. MM231 0.01 15 11 O 204455 Rhodobacterales 0.00 3 0 F 31989 Paracoccaceae 0.00 3 0 G 2816884 Qingshengfaniella 0.00 3 3 S 2599296 Qingshengfaniella alkalisoli 0.00 1 0 F 2854170 Roseobacteraceae 0.00 1 1 G 92944 Ketogulonicigenium 0.01 14 1 O 204457 Sphingomonadales 0.01 10 0 F 335929 Erythrobacteraceae 0.01 10 0 G 2800686 Tsuneonella 0.01 10 0 G1 2800703 unclassified Tsuneonella 0.01 10 10 S 3042152 Tsuneonella sp. CC-YZS046 0.00 3 0 F 41297 Sphingomonadaceae 0.00 2 1 G 165697 Sphingopyxis 0.00 1 1 S 1515612 Sphingopyxis fribergensis 0.00 1 0 G 13687 Sphingomonas 0.00 1 1 S 2319844 Sphingomonas paeninsulae 0.00 4 0 O 3108222 Geminicoccales 0.00 4 0 F 2066434 Geminicoccaceae 0.00 4 0 G 171436 Tistrella 0.00 4 0 S 171437 Tistrella mobilis 0.00 4 4 S1 1110502 Tistrella mobilis KA081020-065 0.00 3 0 O 255473 Parvularculales 0.00 3 0 F 255474 Parvularculaceae 0.00 3 0 G 208215 Parvularcula 0.00 3 0 G1 2647080 unclassified Parvularcula 0.00 3 3 S 3067902 Parvularcula sp. IMCC14364 0.00 2 0 O 1921002 Holosporales 0.00 1 0 F 44746 Holosporaceae 0.00 1 0 G 2654634 Candidatus Hydrogenosomobacter 0.00 1 1 S 2558174 Candidatus Hydrogenosomobacter endosymbioticus 0.00 1 0 F 1777752 Candidatus Paracaedibacteraceae 0.00 1 0 G 3163645 Candidatus Bodocaedibacter 0.00 1 1 S 2741701 Candidatus Bodocaedibacter vickermanii 0.42 544 43 C 1236 Gammaproteobacteria 0.16 208 14 O 91347 Enterobacterales 0.11 149 37 F 543 Enterobacteriaceae 0.02 30 0 G 590 Salmonella 0.02 30 0 S 28901 Salmonella enterica 0.02 30 3 S1 59201 Salmonella enterica subsp. enterica 0.01 12 12 S2 600 Salmonella enterica subsp. enterica serovar Thompson 0.01 10 10 S2 2579247 Salmonella enterica subsp. enterica serovar Rough O:-:- 0.00 2 2 S2 58712 Salmonella enterica subsp. enterica serovar Anatum 0.00 1 1 S2 108619 Salmonella enterica subsp. enterica serovar Newport 0.00 1 1 S2 2583588 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- 0.00 1 0 S2 58096 Salmonella enterica subsp. enterica serovar Bareilly 0.00 1 1 S3 1182172 Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000661 0.02 23 0 F1 2890311 Klebsiella/Raoultella group 0.01 17 0 G 570 Klebsiella 0.01 14 6 S 573 Klebsiella pneumoniae 0.01 8 7 S1 72407 Klebsiella pneumoniae subsp. pneumoniae 0.00 1 1 S2 1094170 Klebsiella pneumoniae subsp. pneumoniae KPNIH10 0.00 1 1 S 548 Klebsiella aerogenes 0.00 1 1 S 571 Klebsiella oxytoca 0.00 1 1 S 1134687 Klebsiella michiganensis 0.00 6 0 G 160674 Raoultella 0.00 6 0 G1 2627600 unclassified Raoultella 0.00 6 6 S 2799495 Raoultella sp. XY-1 0.02 21 0 F1 191675 Enterobacteriaceae incertae sedis 0.02 21 0 F2 84563 ant, tsetse, mealybug, aphid, etc. endosymbionts 0.01 18 0 F3 84564 ant endosymbionts 0.01 18 0 G 203804 Candidatus Blochmanniella 0.01 18 15 G1 711328 unclassified Candidatus Blochmanniella 0.00 3 3 S 2681987 Blochmannia endosymbiont of Colobopsis nipponica 0.00 2 0 F3 146507 aphid secondary symbionts 0.00 1 1 G 568987 Candidatus Hamiltonella 0.00 1 0 G 568988 Candidatus Regiella 0.00 1 0 G1 3077955 unclassified Candidatus Regiella 0.00 1 1 S 3077956 Candidatus Regiella endosymbiont of Tuberolachnus salignus 0.00 1 0 G 1906657 Candidatus Doolittlea 0.00 1 1 S 1778262 Candidatus Doolittlea endobia 0.02 20 0 G 561 Escherichia 0.02 20 20 S 562 Escherichia coli 0.01 14 0 F1 36866 unclassified Enterobacteriaceae 0.01 13 13 S 2675787 Enterobacteriaceae endosymbiont of Donacia tomentosa 0.00 1 1 S 2675780 Enterobacteriaceae endosymbiont of Donacia piscatrix 0.00 1 0 G 547 Enterobacter 0.00 1 0 G1 354276 Enterobacter cloacae complex 0.00 1 1 S 299767 Enterobacter ludwigii 0.00 1 0 G 2815296 Jejubacter 0.00 1 1 S 2579935 Jejubacter calystegiae 0.00 1 0 G 544 Citrobacter 0.00 1 0 G1 1344959 Citrobacter freundii complex 0.00 1 1 S 67827 Citrobacter werkmanii 0.00 1 0 G 620 Shigella 0.00 1 1 S 623 Shigella flexneri 0.01 16 8 F 1903414 Morganellaceae 0.00 5 1 G 583 Proteus 0.00 4 4 S 584 Proteus mirabilis 0.00 2 0 G 637 Arsenophonus 0.00 1 1 S 638 Arsenophonus nasoniae 0.00 1 0 G1 2627083 unclassified Arsenophonus 0.00 1 1 S 1231049 Arsenophonus endosymbiont of Aphis craccivora 0.00 1 0 G 581 Morganella 0.00 1 1 S 582 Morganella morganii 0.01 12 0 F 2812006 Bruguierivoracaceae 0.01 12 0 G 84565 Sodalis 0.01 11 11 S 2697027 Sodalis ligni 0.00 1 0 S 1486991 Candidatus Sodalis pierantonius 0.00 1 1 S1 2342 Candidatus Sodalis pierantonius str. SOPE 0.01 9 0 F 1903410 Pectobacteriaceae 0.00 4 0 G 71655 Brenneria 0.00 3 3 S 2722756 Brenneria izadpanahii 0.00 1 1 S 1109412 Brenneria goodwinii 0.00 2 0 G 122277 Pectobacterium 0.00 2 2 S 180957 Pectobacterium brasiliense 0.00 2 0 G 204037 Dickeya 0.00 2 2 S 1089444 Dickeya solani 0.00 1 0 G 1082702 Lonsdalea 0.00 1 1 S 1172565 Lonsdalea populi 0.00 6 0 F 1903409 Erwiniaceae 0.00 2 1 G 551 Erwinia 0.00 1 1 S 1922217 Candidatus Erwinia haradaeae 0.00 2 0 G 32199 Buchnera 0.00 2 1 S 9 Buchnera aphidicola 0.00 1 1 S1 1965431 Buchnera aphidicola (Ceratoglyphina bambusae) 0.00 2 1 G 53335 Pantoea 0.00 1 1 S 59814 Pantoea dispersa 0.00 2 0 F 1903411 Yersiniaceae 0.00 2 0 G 613 Serratia 0.00 1 1 S 61652 Serratia rubidaea 0.00 1 0 S 82996 Serratia plymuthica 0.00 1 1 S1 1006598 Serratia plymuthica RVH1 0.11 145 5 O 72274 Pseudomonadales 0.06 78 1 F 135621 Pseudomonadaceae 0.04 54 11 G 286 Pseudomonas 0.02 24 0 G1 136841 Pseudomonas aeruginosa group 0.02 24 24 S 287 Pseudomonas aeruginosa 0.01 14 1 G1 196821 unclassified Pseudomonas 0.01 12 12 S 2762896 Pseudomonas sp. MPDS 0.00 1 1 S 2895472 Pseudomonas sp. B21-012 0.00 4 4 S 437900 Pseudomonas marincola 0.00 1 0 G1 136845 Pseudomonas putida group 0.00 1 1 S 78327 Pseudomonas mosselii 0.02 23 0 G 1654787 Thiopseudomonas 0.02 23 23 S 1697053 Thiopseudomonas alkaliphila 0.05 61 0 F 2887365 Marinobacteraceae 0.05 61 61 G 2742 Marinobacter 0.00 1 0 F 3085096 Ketobacteraceae 0.00 1 0 G 2025617 Ketobacter 0.00 1 1 S 1917421 Ketobacter alkanivorans 0.02 27 1 O 135622 Alteromonadales 0.02 23 1 F 72275 Alteromonadaceae 0.01 13 0 G 1751872 Lacimicrobium 0.01 13 13 S 1526571 Lacimicrobium alkaliphilum 0.00 4 0 G 2894574 Saccharobesus 0.00 4 4 S 2172099 Saccharobesus litoralis 0.00 3 3 G 1172191 Catenovulum 0.00 1 0 G 89404 Glaciecola 0.00 1 0 S 300231 Glaciecola nitratireducens 0.00 1 1 S1 1085623 Glaciecola nitratireducens FR1064 0.00 1 0 G 261825 Agarivorans 0.00 1 0 G1 2636026 unclassified Agarivorans 0.00 1 1 S 2937286 Agarivorans sp. TSD2052 0.00 1 0 F 267888 Pseudoalteromonadaceae 0.00 1 0 G 53246 Pseudoalteromonas 0.00 1 1 S 28109 Pseudoalteromonas nigrifaciens 0.00 1 1 F 267890 Shewanellaceae 0.00 1 0 F 267891 Moritellaceae 0.00 1 0 G 58050 Moritella 0.00 1 0 S 90736 Moritella marina 0.00 1 1 S1 1202962 Moritella marina ATCC 15381 0.02 26 0 O 135619 Oceanospirillales 0.01 16 3 F 28256 Halomonadaceae 0.01 13 2 F1 114403 Zymobacter group 0.01 10 0 G 33073 Zymobacter 0.01 10 10 S 33074 Zymobacter palmae 0.00 1 0 G 235572 Candidatus Portiera 0.00 1 1 S 91844 Candidatus Portiera aleyrodidarum 0.00 4 0 F 135620 Oceanospirillaceae 0.00 2 0 G 267849 Nitrincola 0.00 2 2 S 2614693 Nitrincola iocasae 0.00 2 0 G 3018276 Aliamphritea 0.00 2 2 S 1524258 Aliamphritea ceti 0.00 3 0 F 224379 Hahellaceae 0.00 3 3 G 158481 Hahella 0.00 2 0 F 2066474 Endozoicomonadaceae 0.00 2 2 G 305899 Endozoicomonas 0.00 1 0 F 224372 Alcanivoracaceae 0.00 1 1 G 3020832 Alloalcanivorax 0.02 25 0 O 2887326 Moraxellales 0.02 25 1 F 468 Moraxellaceae 0.01 19 6 G 469 Acinetobacter 0.01 7 0 G1 909768 Acinetobacter calcoaceticus/baumannii complex 0.01 7 7 S 470 Acinetobacter baumannii 0.00 4 0 G1 196816 unclassified Acinetobacter 0.00 2 2 S 1879049 Acinetobacter sp. WCHAc010034 0.00 1 1 S 2919376 Acinetobacter sp. AOR07_HL 0.00 1 1 S 3151496 Acinetobacter sp. ANC 7955 0.00 1 1 S 202956 Acinetobacter towneri 0.00 1 1 S 1789224 Acinetobacter larvae 0.00 3 3 G 497 Psychrobacter 0.00 2 0 G 475 Moraxella 0.00 2 2 S 90241 Moraxella lincolnii 0.01 16 0 O 135614 Lysobacterales 0.01 13 0 F 32033 Lysobacteraceae 0.01 7 0 G 338 Xanthomonas 0.01 7 7 S 29447 Xanthomonas albilineans 0.00 3 2 G 68 Lysobacter 0.00 1 0 G1 2635362 unclassified Lysobacter 0.00 1 1 S 2904252 Lysobacter sp. KIS68-7 0.00 3 3 G 40323 Stenotrophomonas 0.00 3 1 F 1775411 Rhodanobacteraceae 0.00 2 1 G 242605 Luteibacter 0.00 1 1 S 564369 Luteibacter anthropi 0.01 13 0 O 135623 Vibrionales 0.01 13 3 F 641 Vibrionaceae 0.01 9 1 G 662 Vibrio 0.00 5 5 S 666 Vibrio cholerae 0.00 1 1 S 1481923 Vibrio astriarenae 0.00 1 0 G1 2614977 unclassified Vibrio 0.00 1 1 S 2661922 Vibrio sp. THAF191d 0.00 1 0 S 52443 Vibrio tapetis 0.00 1 1 S1 1671868 Vibrio tapetis subsp. tapetis 0.00 1 0 G 657 Photobacterium 0.00 1 0 S 38293 Photobacterium damselae 0.00 1 1 S1 85581 Photobacterium damselae subsp. damselae 0.01 10 0 O 135618 Methylococcales 0.01 10 0 F 403 Methylococcaceae 0.00 5 0 G 1808977 Candidatus Methylospira 0.00 5 5 S 1808979 Candidatus Methylospira mobilis 0.00 2 1 G 416 Methylomonas 0.00 1 1 S 3058963 Methylomonas montana 0.00 2 0 G 1295378 Methylogaea 0.00 2 2 S 1295382 Methylogaea oryzae 0.00 1 0 G 762296 Methylovulum 0.00 1 1 S 1704499 Methylovulum psychrotolerans 0.01 8 0 O 1706369 Cellvibrionales 0.00 5 0 F 1706371 Cellvibrionaceae 0.00 5 2 G 447467 Simiduia 0.00 2 0 S 447471 Simiduia agarivorans 0.00 2 2 S1 1117647 Simiduia agarivorans SA1 = DSM 21679 0.00 1 0 G1 2639280 unclassified Simiduia 0.00 1 1 S 2909669 Simiduia sp. 21SJ11W-1 0.00 2 0 F 1706375 Spongiibacteraceae 0.00 1 0 G 630749 Spongiibacter 0.00 1 1 S 1748242 Spongiibacter taiwanensis 0.00 1 0 G 1084558 Oceanicoccus 0.00 1 1 S 716816 Oceanicoccus sagamiensis 0.00 1 0 F 1706373 Microbulbiferaceae 0.00 1 0 G 48073 Microbulbifer 0.00 1 0 G1 2619833 unclassified Microbulbifer 0.00 1 1 S 2745199 Microbulbifer sp. YPW1 0.00 5 0 O 135615 Cardiobacteriales 0.00 4 2 F 868 Cardiobacteriaceae 0.00 1 1 G 2717 Cardiobacterium 0.00 1 0 G 13275 Suttonella 0.00 1 0 G1 2908647 unclassified Suttonella 0.00 1 1 S 2908648 Suttonella sp. R2A3 0.00 1 0 F 3018589 Ignatzschineriaceae 0.00 1 0 G 582472 Wohlfahrtiimonas 0.00 1 1 S 400946 Wohlfahrtiimonas chitiniclastica 0.00 5 0 O 135613 Chromatiales 0.00 4 1 F 1046 Chromatiaceae 0.00 2 0 G 2828366 Caldichromatium 0.00 2 2 S 2699430 Caldichromatium japonicum 0.00 1 0 G 156885 Thioflavicoccus 0.00 1 0 S 80679 Thioflavicoccus mobilis 0.00 1 1 S1 765912 Thioflavicoccus mobilis 8321 0.00 1 0 F 449719 Granulosicoccaceae 0.00 1 0 G 437504 Granulosicoccus 0.00 1 0 S 437505 Granulosicoccus antarcticus 0.00 1 1 S1 1192854 Granulosicoccus antarcticus IMCC3135 0.00 3 0 C1 118884 Gammaproteobacteria incertae sedis 0.00 2 0 G 1076625 Candidatus Steffania 0.00 2 2 S 1076626 Candidatus Steffania adelgidicola 0.00 1 0 F 412032 Celerinatantimonadaceae 0.00 1 0 G 412033 Celerinatantimonas 0.00 1 1 S 412034 Celerinatantimonas diazotrophica 0.00 3 0 O 72273 Thiotrichales 0.00 2 0 F 135616 Piscirickettsiaceae 0.00 1 1 G 34067 Cycloclasticus 0.00 1 0 G 2039723 Thiomicrorhabdus 0.00 1 1 S 2211106 Thiomicrorhabdus aquaedulcis 0.00 1 0 F 135617 Thiotrichaceae 0.00 1 1 G 1030 Thiothrix 0.00 2 0 O 118969 Legionellales 0.00 1 1 F 444 Legionellaceae 0.00 1 0 F 118968 Coxiellaceae 0.00 1 0 G 254245 Aquicella 0.00 1 1 S 254246 Aquicella lusitana 0.00 2 0 O 135624 Aeromonadales 0.00 2 0 F 84642 Aeromonadaceae 0.00 1 1 G 642 Aeromonas 0.00 1 0 G 2802288 Dongshaea 0.00 1 1 S 2047966 Dongshaea marina 0.00 1 0 O 135625 Pasteurellales 0.00 1 1 F 712 Pasteurellaceae 0.00 1 0 O 3085109 Thiohalobacterales 0.00 1 0 F 3085110 Thiohalobacteraceae 0.00 1 1 G 1273155 Thiohalobacter 0.00 1 0 O 1240482 Orbales 0.00 1 0 F 1240483 Orbaceae 0.00 1 0 G 1335631 Frischella 0.00 1 1 S 1267021 Frischella perrara 0.05 60 4 C 28216 Betaproteobacteria 0.03 45 2 O 80840 Burkholderiales 0.02 23 2 F 80864 Comamonadaceae 0.01 15 2 G 283 Comamonas 0.01 12 12 S 1082851 Comamonas serinivorans 0.00 1 0 S 32013 Comamonas terrigena 0.00 1 1 S1 1219032 Comamonas terrigena NBRC 13299 0.00 3 0 G 219181 Ottowia 0.00 3 0 G1 2645081 unclassified Ottowia 0.00 3 3 S 1658672 Ottowia sp. oral taxon 894 0.00 1 0 G 34072 Variovorax 0.00 1 1 S 34073 Variovorax paradoxus 0.00 1 1 G 47420 Hydrogenophaga 0.00 1 0 G 232523 Hylemonella 0.00 1 1 S 80880 Hylemonella gracilis 0.01 9 3 F 75682 Oxalobacteraceae 0.00 3 1 F1 2895353 Telluria group 0.00 2 0 G 149698 Massilia 0.00 2 0 G1 2609279 unclassified Massilia 0.00 1 1 S 1707785 Massilia sp. WG5 0.00 1 1 S 3126507 Massilia sp. W12 0.00 1 1 G 963 Herbaspirillum 0.00 1 0 G 401469 Undibacterium 0.00 1 1 G1 2630295 unclassified Undibacterium 0.00 1 0 G 884214 Candidatus Zinderia 0.00 1 0 G1 3077950 unclassified Candidatus Zinderia 0.00 1 1 S 3077951 Candidatus Zinderia endosymbiont of Aphrophora alni 0.00 6 0 F 119060 Burkholderiaceae 0.00 5 0 G 32008 Burkholderia 0.00 5 0 G1 87882 Burkholderia cepacia complex 0.00 2 2 S 87883 Burkholderia multivorans 0.00 1 1 S 152500 Burkholderia dolosa 0.00 1 1 S 292 Burkholderia cepacia 0.00 1 1 S 488447 Burkholderia contaminans 0.00 1 0 G 48736 Ralstonia 0.00 1 0 G1 3116862 Ralstonia solanacearum species complex 0.00 1 1 S 305 Ralstonia solanacearum 0.00 2 0 F 995019 Sutterellaceae 0.00 2 1 G 40544 Sutterella 0.00 1 1 S 40545 Sutterella wadsworthensis 0.00 2 0 F 2975441 Sphaerotilaceae 0.00 2 2 G 93681 Roseateles 0.00 1 0 O1 224471 Burkholderiales genera incertae sedis 0.00 1 0 G 114248 Tepidimonas 0.00 1 1 S 307486 Tepidimonas taiwanensis 0.01 7 0 O 32003 Nitrosomonadales 0.00 4 0 F 206379 Nitrosomonadaceae 0.00 4 4 G 914 Nitrosomonas 0.00 1 1 F 32011 Methylophilaceae 0.00 1 0 F 2008790 Thiobacillaceae 0.00 1 0 G 1938335 Sulfuritortus 0.00 1 1 S 1914471 Sulfuritortus calidifontis 0.00 1 0 F 2772226 Sulfuricellaceae 0.00 1 0 G 1778653 Sulfuriferula 0.00 1 1 S 2675298 Sulfuriferula nivalis 0.00 4 0 O 206351 Neisseriales 0.00 2 0 F 481 Neisseriaceae 0.00 2 2 G 482 Neisseria 0.00 2 1 F 1499392 Chromobacteriaceae 0.00 1 1 G 407217 Aquitalea 0.01 13 0 D1 1783270 FCB group 0.01 13 0 D2 68336 Bacteroidota/Chlorobiota group 0.01 13 0 P 976 Bacteroidota 0.01 9 0 C 200643 Bacteroidia 0.01 9 1 O 171549 Bacteroidales 0.01 8 0 F 815 Bacteroidaceae 0.01 8 0 G 816 Bacteroides 0.01 8 8 S 817 Bacteroides fragilis 0.00 4 0 C 768503 Cytophagia 0.00 4 1 O 768507 Cytophagales 0.00 3 0 F 2896860 Spirosomataceae 0.00 2 0 G 332157 Larkinella 0.00 2 2 S 332158 Larkinella insperata 0.00 1 0 G 105 Runella 0.00 1 0 G1 2631759 unclassified Runella 0.00 1 1 S 2268026 Runella sp. SP2 0.00 5 0 D1 1783257 PVC group 0.00 4 0 P 74201 Verrucomicrobiota 0.00 4 0 C 203494 Verrucomicrobiia 0.00 4 0 O 48461 Verrucomicrobiales 0.00 4 0 F 203557 Verrucomicrobiaceae 0.00 2 0 G 518753 Luteolibacter 0.00 2 0 G1 2637149 unclassified Luteolibacter 0.00 2 2 S 2995170 Luteolibacter sp. SL250 0.00 2 0 G 1348508 Roseimicrobium 0.00 2 0 G1 2711230 unclassified Roseimicrobium 0.00 2 2 S 2711231 Roseimicrobium sp. ORNL1 0.00 1 0 P 203682 Planctomycetota 0.00 1 0 C 203683 Planctomycetia 0.00 1 0 O 112 Planctomycetales 0.00 1 1 F 126 Planctomycetaceae 0.00 4 0 P 200940 Thermodesulfobacteriota 0.00 4 0 C 3031651 Desulfuromonadia 0.00 3 0 O 3031668 Geobacterales 0.00 3 1 F 213422 Geobacteraceae 0.00 2 2 G 28231 Geobacter 0.00 1 0 O 69541 Desulfuromonadales 0.00 1 0 F 2812024 Syntrophotaleaceae 0.00 1 0 G 2812025 Syntrophotalea 0.00 1 1 S 1842532 Syntrophotalea acetylenivorans 0.00 1 0 P 2818505 Myxococcota 0.00 1 0 P1 3031711 Polyangia 0.00 1 0 O 3031714 Haliangiales 0.00 1 0 F 224464 Kofleriaceae 0.00 1 0 G 162027 Haliangium 0.00 1 0 S 80816 Haliangium ochraceum 0.00 1 1 S1 502025 Haliangium ochraceum DSM 14365 0.00 1 0 P 200938 Chrysiogenota 0.00 1 0 C 118001 Chrysiogenia 0.00 1 0 O 189769 Chrysiogenales 0.00 1 0 F 189770 Chrysiogenaceae 0.00 1 0 G 393029 Desulfurispirillum 0.00 1 1 S 936456 Desulfurispirillum indicum