0.07 333 333 U 0 unclassified 99.93 467542 0 R 1 root 99.93 467542 0 R1 131567 cellular organisms 99.93 467537 2352 D 2 Bacteria 74.78 349870 395 D1 1783272 Terrabacteria group 74.31 347687 526 P 1239 Bacillota 73.95 345975 23754 C 91061 Bacilli 40.29 188513 9297 O 1385 Bacillales 21.01 98284 46 F 90964 Staphylococcaceae 20.72 96936 441 G 1279 Staphylococcus 20.06 93868 93760 S 1280 Staphylococcus aureus 0.02 100 100 S1 1229492 Staphylococcus aureus 08BA02176 0.00 8 8 S1 548470 Staphylococcus aureus subsp. aureus MN8 0.35 1615 1615 S 70255 Staphylococcus condimenti 0.09 444 444 S 1290 Staphylococcus hominis 0.06 297 297 S 29378 Staphylococcus arlettae 0.02 86 86 S 985002 Staphylococcus argenteus 0.02 84 0 G1 2815305 Staphylococcus intermedius group 0.02 80 80 S 283734 Staphylococcus pseudintermedius 0.00 4 4 S 53344 Staphylococcus delphini 0.01 57 56 S 1282 Staphylococcus epidermidis 0.00 1 1 S1 176280 Staphylococcus epidermidis ATCC 12228 0.00 16 16 S 201828 Staphylococcus casei 0.00 16 16 S 28035 Staphylococcus lugdunensis 0.00 3 3 S 29388 Staphylococcus capitis 0.00 3 3 S 1283 Staphylococcus haemolyticus 0.00 3 3 S 1286 Staphylococcus simulans 0.00 2 2 S 170573 Staphylococcus pettenkoferi 0.00 1 1 S 1292 Staphylococcus warneri 0.19 868 1 G 2803850 Mammaliicoccus 0.19 866 866 S 1296 Mammaliicoccus sciuri 0.00 1 1 S 71237 Mammaliicoccus vitulinus 0.08 381 0 G 45669 Salinicoccus 0.08 381 0 G1 2628837 unclassified Salinicoccus 0.08 381 381 S 3136731 Salinicoccus sp. Bachu38 0.01 38 0 G 3076173 Macrococcoides 0.01 38 38 S 69966 Macrococcoides caseolyticum 0.00 13 13 G 227979 Jeotgalicoccus 0.00 2 0 G 489909 Nosocomiicoccus 0.00 2 2 S 1232430 Nosocomiicoccus massiliensis 15.04 70365 910 F 186817 Bacillaceae 13.66 63892 1326 G 1386 Bacillus 9.11 42643 1347 G1 653685 Bacillus subtilis group 6.00 28050 22 G2 1938374 Bacillus amyloliquefaciens group 5.54 25897 25486 S 492670 Bacillus velezensis 0.09 410 410 S1 1385727 Bacillus velezensis NAU-B3 0.00 1 1 S1 1458206 Bacillus velezensis NJN-6 0.46 2129 2120 S 1390 Bacillus amyloliquefaciens 0.00 8 8 S1 1292358 Bacillus amyloliquefaciens KHG19 0.00 1 1 S1 1034836 Bacillus amyloliquefaciens XH7 0.00 2 2 S 659243 Bacillus siamensis 2.77 12948 11872 S 1423 Bacillus subtilis 0.17 781 682 S1 135461 Bacillus subtilis subsp. subtilis 0.02 90 90 S2 1302650 Bacillus subtilis subsp. subtilis str. BAB-1 0.00 9 9 S2 224308 Bacillus subtilis subsp. subtilis str. 168 0.06 295 295 S1 86029 Bacillus subtilis subsp. natto 0.03 134 134 S 1648923 Bacillus paralicheniformis 0.01 61 60 S 1452 Bacillus atrophaeus 0.00 1 1 S1 1529886 Bacillus atrophaeus subsp. globigii 0.01 50 0 G2 653388 Bacillus mojavensis subgroup 0.01 50 50 S 260554 Bacillus halotolerans 0.01 30 30 S 483913 Bacillus inaquosorum 0.00 22 22 S 1402 Bacillus licheniformis 0.00 1 1 S 96241 Bacillus spizizenii 1.71 7992 7992 S 561879 Bacillus safensis 1.32 6176 85 G1 86661 Bacillus cereus group 0.55 2567 2484 S 1396 Bacillus cereus 0.01 43 43 S1 1454382 Bacillus cereus D17 0.01 27 27 S1 1003239 Bacillus cereus C1L 0.00 9 9 S1 572264 Bacillus cereus 03BB102 0.00 2 2 S1 288681 Bacillus cereus E33L 0.00 2 0 S1 1179100 Bacillus cereus biovar anthracis 0.00 2 2 S2 637380 Bacillus cereus biovar anthracis str. CI 0.45 2122 2038 S 1428 Bacillus thuringiensis 0.01 64 0 S1 29339 Bacillus thuringiensis serovar kurstaki 0.01 63 63 S2 1261129 Bacillus thuringiensis serovar kurstaki str. HD-1 0.00 1 1 S2 1279365 Bacillus thuringiensis serovar kurstaki str. HD73 0.00 12 12 S1 1217737 Bacillus thuringiensis HD-789 0.00 5 5 S1 412694 Bacillus thuringiensis str. Al Hakam 0.00 2 2 S1 1423143 Bacillus thuringiensis Bt18247 0.00 1 1 S1 180850 Bacillus thuringiensis serovar indiana 0.16 726 726 S 1392 Bacillus anthracis 0.10 449 449 S 64104 Bacillus pseudomycoides 0.03 153 153 S 2026186 Bacillus paranthracis 0.01 43 21 S 1405 Bacillus mycoides 0.00 22 22 S1 315730 Bacillus mycoides KBAB4 0.01 25 0 G2 2750818 unclassified Bacillus cereus group 0.01 25 25 S 1892404 Bacillus sp. ABP14 0.00 5 5 S 2026191 Bacillus luti 0.00 1 1 S 2817477 Bacillus paramobilis 0.75 3529 0 G1 1792192 Bacillus altitudinis complex 0.75 3529 3529 S 293387 Bacillus altitudinis 0.41 1930 1 G1 185979 unclassified Bacillus (in: firmicutes) 0.15 725 725 S 2841656 Bacillus sp. ZHX3 0.15 688 688 S 467262 Bacillus sp. T3 0.05 211 211 S 666686 Bacillus sp. 1NLA3E 0.03 142 142 S 3077323 Bacillus sp. SI2 0.03 119 119 S 2709784 Bacillus sp. KH172YL63 0.01 35 35 S 2874284 Bacillus sp. CRB-7 0.00 6 6 S 1806216 Bacillus sp. RZ2MS9 0.00 1 1 S 2884834 Bacillus sp. CMF12 0.00 1 1 S 3073816 Bacillus sp. NEB1478 0.00 1 1 S 2049935 Bacillus sp. Lzh-5 0.06 294 294 S 1408 Bacillus pumilus 0.00 2 2 S 2672567 Bacillus aquiflavi 0.40 1874 1 G 2675230 Cytobacillus 0.20 953 953 S 665099 Cytobacillus oceanisediminis 0.19 904 904 S 1399 Cytobacillus firmus 0.00 16 16 S 3051614 Cytobacillus pseudoceanisediminis 0.27 1270 56 G 2837504 Heyndrickxia 0.26 1214 1205 S 1398 Heyndrickxia coagulans 0.00 9 9 S1 345219 Heyndrickxia coagulans 36D1 0.17 785 4 G 2800373 Priestia 0.16 734 727 S 1404 Priestia megaterium 0.00 7 7 S1 1006007 Priestia megaterium WSH-002 0.01 47 47 S 412384 Priestia aryabhattai 0.06 261 0 G 175304 Lentibacillus 0.05 252 0 G1 2614679 unclassified Lentibacillus 0.05 252 252 S 2518176 Lentibacillus sp. CBA3610 0.00 8 8 S 1472767 Lentibacillus amyloliquefaciens 0.00 1 1 S 2911514 Lentibacillus daqui 0.06 261 56 G 400634 Lysinibacillus 0.02 96 0 G1 2636778 unclassified Lysinibacillus 0.02 95 95 S 2954544 Lysinibacillus sp. FSL W7-1291 0.00 1 1 S 2936682 Lysinibacillus sp. Ag94 0.01 45 39 S 1421 Lysinibacillus sphaericus 0.00 6 6 S1 444177 Lysinibacillus sphaericus C3-41 0.01 40 40 S 2086577 Lysinibacillus timonensis 0.00 21 21 S 2590012 Lysinibacillus agricola 0.00 2 2 S 28031 Lysinibacillus fusiformis 0.00 1 1 S 1145276 Lysinibacillus varians 0.05 211 211 G 2893057 Shouchella 0.04 201 0 G 2675229 Peribacillus 0.03 144 144 S 264697 Peribacillus muralis 0.01 29 29 S 1407 Peribacillus psychrosaccharolyticus 0.01 27 27 S 228899 Peribacillus asahii 0.00 1 1 S 450367 Peribacillus frigoritolerans 0.02 91 84 G 182709 Oceanobacillus 0.00 7 7 S 2052660 Oceanobacillus zhaokaii 0.02 83 24 G 129337 Geobacillus 0.01 36 3 S 33940 Geobacillus thermodenitrificans 0.01 33 33 S1 420246 Geobacillus thermodenitrificans NG80-2 0.00 7 0 G1 2642459 unclassified Geobacillus 0.00 3 3 S 550542 Geobacillus sp. Y412MC52 0.00 3 3 S 1233873 Geobacillus sp. GHH01 0.00 1 1 S 2954744 Geobacillus sp. FSL K6-0789 0.00 6 0 G1 1505648 Geobacillus thermoleovorans group 0.00 6 6 S 33941 Geobacillus thermoleovorans 0.00 5 5 S 860353 Geobacillus proteiniphilus 0.00 5 5 S 1921421 Geobacillus genomosp. 3 0.02 82 0 G 2685905 Salicibibacter 0.02 82 82 S 2743001 Salicibibacter cibi 0.01 64 0 G 2893055 Halalkalibacterium (ex Joshi et al. 2022) 0.01 64 0 S 86665 Halalkalibacterium halodurans 0.01 64 64 S1 272558 Halalkalibacterium halodurans C-125 0.01 60 0 G 1494427 Tepidibacillus 0.01 60 60 S 3131995 Tepidibacillus marianensis 0.01 58 0 G 2837508 Rossellomorea 0.01 58 58 S 189381 Rossellomorea marisflavi 0.01 52 0 G 2005375 Alkalicoccus 0.01 52 52 S 1667239 Alkalicoccus halolimnae 0.01 41 0 G 45667 Halobacillus 0.01 33 33 S 45668 Halobacillus litoralis 0.00 8 8 S 2932258 Halobacillus shinanisalinarum 0.01 38 7 G 2675233 Metabacillus 0.01 24 24 S 1535204 Metabacillus endolithicus 0.00 6 3 G1 2675274 unclassified Metabacillus 0.00 1 1 S 2745198 Metabacillus sp. KUDC1714 0.00 1 1 S 2806989 Metabacillus sp. cB07 0.00 1 1 S 2897333 Metabacillus sp. B2-18 0.00 1 1 S 2567941 Metabacillus sediminilitoris 0.00 20 1 G 459532 Terribacillus 0.00 11 0 G1 2636508 unclassified Terribacillus 0.00 8 8 S 2850441 Terribacillus sp. DMT04 0.00 3 3 S 2921447 Terribacillus sp. FSL K6-0262 0.00 7 7 S 361277 Terribacillus saccharophilus 0.00 1 1 S 586416 Terribacillus aidingensis 0.00 20 0 G 2675231 Mesobacillus 0.00 20 20 S 285983 Mesobacillus subterraneus 0.00 16 0 G 150247 Anoxybacillus 0.00 13 13 G1 2639704 unclassified Anoxybacillus 0.00 2 0 S 33934 Anoxybacillus flavithermus 0.00 2 2 S1 491915 Anoxybacillus flavithermus WK1 0.00 1 1 S 198467 Anoxybacillus gonensis 0.00 15 0 G 379065 Caldalkalibacillus 0.00 15 0 S 296745 Caldalkalibacillus thermarum 0.00 15 15 S1 986075 Caldalkalibacillus thermarum TA2.A1 0.00 15 0 G 2837506 Niallia 0.00 14 14 S 1397 Niallia circulans 0.00 1 0 G1 2837522 unclassified Niallia 0.00 1 1 S 3082444 Niallia sp. XMNu-256 0.00 12 0 G 2785518 Radiobacillus 0.00 12 12 S 2594883 Radiobacillus deserti 0.00 9 7 G 351195 Salimicrobium 0.00 2 0 G1 2619739 unclassified Salimicrobium 0.00 2 2 S 3095364 Salimicrobium sp. PL1-032A 0.00 6 0 G 84406 Virgibacillus 0.00 4 0 G1 2620237 unclassified Virgibacillus 0.00 4 4 S 2700081 Virgibacillus sp. MSP4-1 0.00 2 2 S 447199 Virgibacillus salarius 0.00 4 0 G 1433999 Domibacillus 0.00 4 0 G1 2632383 unclassified Domibacillus 0.00 4 4 S 3077789 Domibacillus sp. DTU_2020_1001157_1_SI_ALB_TIR_016 0.00 3 0 G 2837510 Siminovitchia 0.00 3 3 S 254758 Siminovitchia fortis 0.00 3 0 G 2675232 Neobacillus 0.00 2 2 S 1193713 Neobacillus mesonae 0.00 1 0 G1 2675272 unclassified Neobacillus 0.00 1 1 S 3070683 Neobacillus sp. OS1-33 0.00 3 1 G 3033930 Fervidibacillus 0.00 1 1 S 2980026 Fervidibacillus albus 0.00 1 1 S 2980027 Fervidibacillus halotolerans 0.00 2 0 G 2837502 Ectobacillus 0.00 2 0 G1 2837512 unclassified Ectobacillus 0.00 2 2 S 2933872 Ectobacillus sp. JY-23 0.00 2 0 G 1055323 Aeribacillus 0.00 2 0 G1 2640495 unclassified Aeribacillus 0.00 2 2 S 2954683 Aeribacillus sp. FSL K6-8210 0.00 1 0 G 1884449 Salipaludibacillus 0.00 1 0 G1 2635229 unclassified Salipaludibacillus 0.00 1 1 S 2924031 Salipaludibacillus sp. LMS25 0.90 4230 9 F 186820 Listeriaceae 0.68 3203 189 G 1637 Listeria 0.30 1384 0 G1 2642072 unclassified Listeria 0.30 1384 1384 S 1844999 Listeria sp. PSOL-1 0.29 1371 1371 S 1639 Listeria monocytogenes 0.05 230 0 S 1638 Listeria ivanovii 0.05 230 0 S1 202751 Listeria ivanovii subsp. ivanovii 0.05 230 230 S2 881621 Listeria ivanovii subsp. ivanovii PAM 55 0.00 22 22 S 1642 Listeria innocua 0.00 5 5 S 1006155 Listeria weihenstephanensis 0.00 2 2 S 1497681 Listeria newyorkensis 0.22 1018 0 G 2755 Brochothrix 0.22 1018 1018 S 2756 Brochothrix thermosphacta 0.78 3648 15 F 186822 Paenibacillaceae 0.40 1884 34 G 44249 Paenibacillus 0.13 625 621 S 1406 Paenibacillus polymyxa 0.00 4 4 S1 1413214 Paenibacillus polymyxa SQR-21 0.12 553 553 S 562959 Paenibacillus cellulositrophicus 0.08 373 373 S 2509456 Paenibacillus protaetiae 0.01 58 58 S 2565926 Paenibacillus algicola 0.01 54 54 S 61624 Paenibacillus mucilaginosus 0.01 50 6 G1 185978 unclassified Paenibacillus 0.00 13 13 S 2921361 Paenibacillus sp. FSL E2-0178 0.00 12 12 S 2921709 Paenibacillus sp. FSL W8-0186 0.00 6 6 S 2211212 Paenibacillus sp. DCT19 0.00 6 6 S 2979727 Paenibacillus sp. KS-LC4 0.00 3 3 S 715179 Paenibacillus sp. sptzw28 0.00 1 1 S 2954679 Paenibacillus sp. FSL K6-2441 0.00 1 1 S 2871175 Paenibacillus sp. DR312 0.00 1 1 S 2921677 Paenibacillus sp. FSL R7-0216 0.00 1 1 S 2921460 Paenibacillus sp. FSL K6-1096 0.01 46 46 S 682956 Paenibacillus jilunlii 0.01 31 31 S 79263 Paenibacillus chitinolyticus 0.00 22 22 S 2704463 Paenibacillus rhizovicinus 0.00 16 16 S 1178515 Paenibacillus swuensis 0.00 7 7 S 253703 Paenibacillus antarcticus 0.00 3 3 S 1333845 Paenibacillus sophorae 0.00 3 2 G1 2044880 Paenibacillus sonchi group 0.00 1 1 S 373687 Paenibacillus sonchi 0.00 2 2 S 1778678 Paenibacillus psychroresistens 0.00 2 2 S 1873425 Paenibacillus tritici 0.00 1 1 S 2909671 Paenibacillus spongiae 0.00 1 0 S 1464 Paenibacillus larvae 0.00 1 1 S1 1477 Paenibacillus larvae subsp. pulvifaciens 0.00 1 1 S 160799 Paenibacillus borealis 0.00 1 1 S 414771 Paenibacillus donghaensis 0.00 1 1 S 3050112 Paenibacillus polygoni 0.23 1064 2 G 329857 Cohnella 0.18 843 843 S 2674991 Cohnella candidum 0.05 218 218 S 2507935 Cohnella abietis 0.00 1 1 S 2728023 Cohnella herbarum 0.14 678 0 F1 85151 Aneurinibacillus group 0.14 678 230 G 55079 Aneurinibacillus 0.09 431 431 S 1500254 Aneurinibacillus soli 0.00 17 0 G1 2642329 unclassified Aneurinibacillus 0.00 17 17 S 3022697 Aneurinibacillus sp. Ricciae_BoGa-3 0.00 7 0 G 55080 Brevibacillus 0.00 4 4 S 45462 Brevibacillus borstelensis 0.00 3 3 S 1465 Brevibacillus laterosporus 0.27 1284 8 F 186818 Planococcaceae 0.20 913 158 G 160795 Ureibacillus 0.13 605 605 S 367743 Ureibacillus thermophilus 0.03 150 150 S 51173 Ureibacillus thermosphaericus 0.03 120 0 G 889388 Chryseomicrobium 0.03 120 0 G1 2625558 unclassified Chryseomicrobium 0.03 120 120 S 2921704 Chryseomicrobium sp. FSL W7-1435 0.02 113 0 G 651660 Paenisporosarcina 0.02 102 102 S 2320858 Paenisporosarcina cavernae 0.00 11 11 S 417367 Paenisporosarcina antarctica 0.02 86 84 G 1569 Sporosarcina 0.00 1 1 S 1571 Sporosarcina ureae 0.00 1 0 G1 2647733 unclassified Sporosarcina 0.00 1 1 S 1930546 Sporosarcina sp. P37 0.01 41 0 G 1372 Planococcus 0.01 41 0 G1 2662419 unclassified Planococcus (in: firmicutes) 0.01 41 41 S 2058136 Planococcus sp. MB-3u-03 0.00 3 0 G 1649 Kurthia 0.00 2 2 S 1650 Kurthia zopfii 0.00 1 0 G1 2644826 unclassified Kurthia 0.00 1 1 S 1750719 Kurthia sp. 11kri321 0.23 1093 0 F 186823 Alicyclobacillaceae 0.23 1088 0 G 29330 Alicyclobacillus 0.23 1087 1087 S 2931921 Alicyclobacillus mengziensis 0.00 1 1 S 392011 Alicyclobacillus fastidiosus 0.00 4 3 G 1129704 Kyrpidia 0.00 1 1 S 2055160 Kyrpidia spormannii 0.00 1 0 G 3156481 Fodinisporobacter 0.00 1 1 S 2901836 Fodinisporobacter ferrooxydans 0.03 151 0 O1 539002 Bacillales incertae sedis 0.03 149 0 O2 539742 Bacillales Family XII. Incertae Sedis 0.03 149 109 G 33986 Exiguobacterium 0.01 36 0 S 132920 Exiguobacterium antarcticum 0.01 36 36 S1 1087448 Exiguobacterium antarcticum B7 0.00 3 3 S 1428684 Exiguobacterium alkaliphilum 0.00 1 0 G1 2644629 unclassified Exiguobacterium 0.00 1 1 S 2829816 Exiguobacterium sp. PFWT01 0.00 2 0 F 539003 Bacillales Family X. Incertae Sedis 0.00 2 0 G 1609627 Hydrogenibacillus 0.00 2 0 G1 2773237 unclassified Hydrogenibacillus 0.00 2 2 S 2866627 Hydrogenibacillus sp. N12 0.03 126 0 F 539738 Gemellaceae 0.03 126 80 G 1378 Gemella 0.01 46 46 G1 2624949 unclassified Gemella 0.01 24 0 F 186824 Thermoactinomycetaceae 0.00 11 0 G 1348505 Polycladomyces 0.00 11 11 S 1125966 Polycladomyces abyssicola 0.00 10 0 G 1677050 Novibacillus 0.00 10 10 S 1471761 Novibacillus thermophilus 0.00 2 0 G 292635 Laceyella 0.00 2 2 S 37482 Laceyella sacchari 0.00 1 0 G 1274351 Kroppenstedtia 0.00 1 1 S 1380685 Kroppenstedtia pulmonis 0.00 8 0 F 3076164 Abyssicoccaceae 0.00 8 0 G 1955413 Abyssicoccus 0.00 8 8 S 1817405 Abyssicoccus albus 0.00 3 0 F 186821 Sporolactobacillaceae 0.00 2 0 G 2077 Sporolactobacillus 0.00 2 2 S 269673 Sporolactobacillus terrae 0.00 1 0 G 475230 Pullulanibacillus 0.00 1 0 G1 2640606 unclassified Pullulanibacillus 0.00 1 1 S 3028315 Pullulanibacillus sp. KACC 23026 28.58 133708 5310 O 186826 Lactobacillales 16.36 76550 11242 F 33958 Lactobacillaceae 7.10 33230 52 G 2767886 Levilactobacillus 7.04 32943 32943 S 1580 Levilactobacillus brevis 0.04 202 202 S 2292255 Levilactobacillus suantsaii 0.00 20 20 S 267363 Levilactobacillus zymae 0.00 9 9 S 637971 Levilactobacillus koreensis 0.00 4 4 S 380393 Levilactobacillus namurensis 1.11 5186 2578 G 2759736 Lacticaseibacillus 0.36 1705 1162 S 1597 Lacticaseibacillus paracasei 0.10 475 475 S1 113557 Lacticaseibacillus paracasei subsp. tolerans 0.01 68 0 S1 47714 Lacticaseibacillus paracasei subsp. paracasei 0.01 68 68 S2 537973 Lacticaseibacillus paracasei subsp. paracasei 8700:2 0.14 667 667 S 3025672 Lacticaseibacillus pabuli 0.04 209 209 S 47715 Lacticaseibacillus rhamnosus 0.00 20 20 S 171523 Lacticaseibacillus pantheris 0.00 5 5 S 57037 Lacticaseibacillus zeae 0.00 2 2 S 88233 Lacticaseibacillus manihotivorans 0.85 3957 435 G 1578 Lactobacillus 0.14 652 53 G1 2620435 unclassified Lactobacillus 0.13 587 587 S 2695882 Lactobacillus sp. 3B(2020) 0.00 11 11 S 2983232 Lactobacillus sp. ESL0785 0.00 1 1 S 2983221 Lactobacillus sp. ESL0731 0.13 612 612 S 2012495 Lactobacillus panisapium 0.12 540 540 S 47770 Lactobacillus crispatus 0.10 461 461 S 1587 Lactobacillus helveticus 0.08 370 0 S 1584 Lactobacillus delbrueckii 0.06 285 1 S1 1585 Lactobacillus delbrueckii subsp. bulgaricus 0.05 236 236 S2 321956 Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 0.01 48 48 S2 390333 Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842 = JCM 1002 0.01 63 63 S1 29397 Lactobacillus delbrueckii subsp. lactis 0.00 22 0 S1 83684 Lactobacillus delbrueckii subsp. delbrueckii 0.00 22 22 S2 1423823 Lactobacillus delbrueckii subsp. delbrueckii DSM 20074 = JCM 1012 0.07 332 332 S 147802 Lactobacillus iners 0.06 273 257 S 1579 Lactobacillus acidophilus 0.00 16 16 S1 272621 Lactobacillus acidophilus NCFM 0.04 169 169 S 83683 Lactobacillus amylolyticus 0.01 63 62 S 267818 Lactobacillus kefiranofaciens 0.00 1 1 S1 190906 Lactobacillus kefiranofaciens subsp. kefirgranum 0.00 14 14 S 151781 Lactobacillus intestinalis 0.00 9 9 S 1596 Lactobacillus gasseri 0.00 7 7 S 33959 Lactobacillus johnsonii 0.00 6 6 S 1600 Lactobacillus acetotolerans 0.00 6 6 S 508451 Lactobacillus taiwanensis 0.00 5 5 S 2269374 Lactobacillus terrae 0.00 2 2 S 2107999 Lactobacillus paragasseri 0.00 1 1 S 1218494 Lactobacillus helsingborgensis 0.82 3836 0 G 2767885 Latilactobacillus 0.81 3802 3792 S 1599 Latilactobacillus sakei 0.00 10 10 S1 214326 Latilactobacillus sakei subsp. sakei 0.01 34 34 S 28038 Latilactobacillus curvatus 0.76 3562 17 G 2767842 Lactiplantibacillus 0.38 1782 1432 S 1590 Lactiplantibacillus plantarum 0.07 350 350 S1 337330 Lactiplantibacillus plantarum subsp. plantarum 0.37 1742 1742 S 1589 Lactiplantibacillus pentosus 0.00 21 21 S 60520 Lactiplantibacillus paraplantarum 0.56 2600 2573 G 1243 Leuconostoc 0.00 14 14 S 1252 Leuconostoc carnosum 0.00 5 0 G1 2685106 unclassified Leuconostoc 0.00 5 5 S 979982 Leuconostoc sp. C2 0.00 3 3 S 1246 Leuconostoc lactis 0.00 3 3 S 2766470 Leuconostoc falkenbergense 0.00 1 1 S 255248 Leuconostoc garlicum 0.00 1 0 G1 3016637 Leuconostoc gelidum group 0.00 1 1 S 115778 Leuconostoc gasicomitatum 0.49 2278 511 G 2767887 Ligilactobacillus 0.29 1349 1289 S 1624 Ligilactobacillus salivarius 0.01 60 60 S1 1194971 Ligilactobacillus salivarius str. Ren 0.05 214 214 S 89059 Ligilactobacillus acidipiscis 0.02 82 82 S 1605 Ligilactobacillus animalis 0.01 68 68 S 1606 Ligilactobacillus aviarius 0.00 20 20 S 1601 Ligilactobacillus agilis 0.00 14 14 S 3050131 Ligilactobacillus cholophilus 0.00 13 6 S 1623 Ligilactobacillus ruminis 0.00 7 7 S1 1069534 Ligilactobacillus ruminis ATCC 27782 0.00 4 4 S 762833 Ligilactobacillus faecis 0.00 3 1 S 1622 Ligilactobacillus murinus 0.00 2 2 S1 1235801 Ligilactobacillus murinus ASF361 0.49 2274 1924 G 2767893 Lentilactobacillus 0.07 332 316 S 1581 Lentilactobacillus buchneri 0.00 16 1 S1 2737512 Lentilactobacillus buchneri subsp. silagei 0.00 15 15 S2 1071400 Lentilactobacillus buchneri subsp. silagei CD034 0.00 15 15 S 1588 Lentilactobacillus hilgardii 0.00 2 2 S 1138822 Lentilactobacillus curieae 0.00 1 1 S 152331 Lentilactobacillus parabuchneri 0.42 1948 39 G 2767881 Fructilactobacillus 0.25 1164 1163 S 1625 Fructilactobacillus sanfranciscensis 0.00 1 1 S1 714313 Fructilactobacillus sanfranciscensis TMW 1.1304 0.12 565 565 S 1614 Fructilactobacillus fructivorans 0.04 176 176 S 2940300 Fructilactobacillus hinvesii 0.00 2 2 S 53444 Fructilactobacillus lindneri 0.00 1 1 S 2940297 Fructilactobacillus carniphilus 0.00 1 1 S 2940299 Fructilactobacillus cliffordii 0.33 1530 0 G 2930384 Periweissella 0.33 1530 1530 S 2506420 Periweissella cryptocerci 0.23 1066 42 G 2742598 Limosilactobacillus 0.15 683 677 S 1598 Limosilactobacillus reuteri 0.00 4 4 S1 1358027 Limosilactobacillus reuteri TD1 0.00 2 2 S1 1340495 Limosilactobacillus reuteri I5007 0.05 229 229 S 1613 Limosilactobacillus fermentum 0.01 45 45 S 35787 Limosilactobacillus pontis 0.01 31 31 S 1633 Limosilactobacillus vaginalis 0.01 28 28 S 227942 Limosilactobacillus gastricus 0.00 7 7 S 1632 Limosilactobacillus oris 0.00 1 1 S 97478 Limosilactobacillus mucosae 0.13 610 147 G 1253 Pediococcus 0.04 189 189 S 480391 Pediococcus argentinicus 0.02 113 113 S 1255 Pediococcus pentosaceus 0.02 81 0 G1 1670797 Pediococcus acidilactici group 0.02 81 81 S 1254 Pediococcus acidilactici 0.01 62 0 G1 554805 unclassified Pediococcus 0.01 62 62 S 2962679 Pediococcus sp. AC40 0.00 17 17 S 51663 Pediococcus damnosus 0.00 1 1 S 187452 Pediococcus claussenii 0.13 595 106 G 2767878 Bombilactobacillus 0.10 488 488 S 1303590 Bombilactobacillus bombi 0.00 1 1 S 2923363 Bombilactobacillus thymidiniphilus 0.13 588 135 G 2767877 Apilactobacillus 0.09 434 434 S 2923364 Apilactobacillus apisilvae 0.00 16 16 S 1218495 Apilactobacillus apinorum 0.00 3 3 S 2419772 Apilactobacillus bombintestini 0.10 485 0 G 2767874 Acetilactobacillus 0.10 485 485 S 1720083 Acetilactobacillus jinshanensis 0.09 405 0 G 2767882 Furfurilactobacillus 0.09 405 405 S 231049 Furfurilactobacillus rossiae 0.07 305 42 G 46255 Weissella 0.05 238 238 S 1631871 Weissella jogaejeotgali 0.00 9 9 S 155866 Weissella soli 0.00 7 7 S 137591 Weissella cibaria 0.00 5 5 S 1249 Weissella paramesenteroides 0.00 4 4 S 759620 Weissella ceti 0.06 263 0 G 2767892 Secundilactobacillus 0.03 139 139 S 176292 Secundilactobacillus malefermentans 0.03 124 124 S 240427 Secundilactobacillus paracollinoides 0.05 222 140 G 2767889 Loigolactobacillus 0.01 58 54 S 1610 Loigolactobacillus coryniformis 0.00 4 0 S1 115542 Loigolactobacillus coryniformis subsp. torquens 0.00 4 4 S2 1423822 Loigolactobacillus coryniformis subsp. torquens DSM 20004 = KCTC 3535 0.00 15 15 S 375175 Loigolactobacillus backii 0.00 9 9 S 1607 Loigolactobacillus bifermentans 0.03 140 0 G 2767891 Schleiferilactobacillus 0.03 140 140 S 304207 Schleiferilactobacillus harbinensis 0.01 66 14 G 2767879 Companilactobacillus 0.01 24 24 S 938155 Companilactobacillus futsaii 0.00 20 20 S 1847728 Companilactobacillus allii 0.00 5 0 S 1602 Companilactobacillus alimentarius 0.00 5 5 S1 1423720 Companilactobacillus alimentarius DSM 20249 0.00 3 3 S 1007676 Companilactobacillus ginsenosidimutans 0.01 55 55 G 3118928 Xylocopilactobacillus 0.01 49 11 G 2767888 Liquorilactobacillus 0.01 37 37 S 1618 Liquorilactobacillus mali 0.00 1 1 S 468911 Liquorilactobacillus hordei 0.00 23 0 G 2767884 Lapidilactobacillus 0.00 23 23 S 51664 Lapidilactobacillus dextrinicus 0.00 16 0 G 2767876 Amylolactobacillus 0.00 16 0 S 1603 Amylolactobacillus amylophilus 0.00 16 16 S1 1423721 Amylolactobacillus amylophilus DSM 20533 = JCM 1125 0.00 14 11 G 46254 Oenococcus 0.00 2 2 S 1247 Oenococcus oeni 0.00 1 1 S 2203724 Oenococcus sicerae 0.00 5 2 G 2767890 Paucilactobacillus 0.00 3 3 S 1296540 Paucilactobacillus nenjiangensis 7.49 35048 7 F 81852 Enterococcaceae 7.42 34717 663 G 1350 Enterococcus 3.87 18090 17877 S 1351 Enterococcus faecalis 0.05 213 213 S1 1201292 Enterococcus faecalis ATCC 29212 1.98 9275 9067 S 1352 Enterococcus faecium 0.04 177 177 S1 1344042 Enterococcus faecium T110 0.01 24 24 S1 1328870 Enterococcus faecium UC7251 0.00 7 7 S1 333849 Enterococcus faecium DO 1.36 6345 6246 S 1354 Enterococcus hirae 0.02 99 99 S1 768486 Enterococcus hirae ATCC 9790 0.03 155 155 S 1353 Enterococcus gallinarum 0.02 110 110 S 37734 Enterococcus casseliflavus 0.02 78 78 S 44008 Enterococcus cecorum 0.00 1 0 G1 2608891 unclassified Enterococcus 0.00 1 1 S 2060307 Enterococcus sp. FDAARGOS_375 0.04 177 42 G 51668 Tetragenococcus 0.02 96 96 S 51669 Tetragenococcus halophilus 0.01 33 33 S 290335 Tetragenococcus koreensis 0.00 6 6 S 526944 Tetragenococcus osmophilus 0.03 147 76 G 2737 Vagococcus 0.01 41 0 G1 2648499 unclassified Vagococcus 0.01 41 41 S 3109030 Vagococcus sp. B2T-5 0.00 20 20 S 633807 Vagococcus penaei 0.00 9 9 S 2991418 Vagococcus intermedius 0.00 1 1 S 2714946 Vagococcus coleopterorum 2.69 12582 305 F 1300 Streptococcaceae 2.05 9584 1415 G 1301 Streptococcus 0.57 2660 2660 S 1811193 Streptococcus pantholopis 0.33 1551 701 S 1308 Streptococcus thermophilus 0.11 507 507 S1 322159 Streptococcus thermophilus LMD-9 0.07 343 343 S1 767463 Streptococcus thermophilus ND03 0.23 1058 956 S 1311 Streptococcus agalactiae 0.02 102 102 S1 1203670 Streptococcus agalactiae GD201008-001 0.16 767 740 S 1314 Streptococcus pyogenes 0.01 27 0 S1 301449 Streptococcus pyogenes serotype M5 0.01 27 27 S2 160491 Streptococcus pyogenes str. Manfredo 0.11 494 0 G1 119603 Streptococcus dysgalactiae group 0.10 486 95 S 1334 Streptococcus dysgalactiae 0.08 357 357 S1 99822 Streptococcus dysgalactiae subsp. dysgalactiae 0.01 34 33 S1 119602 Streptococcus dysgalactiae subsp. equisimilis 0.00 1 1 S2 486410 Streptococcus dysgalactiae subsp. equisimilis GGS_124 0.00 8 0 S 1336 Streptococcus equi 0.00 8 8 S1 40041 Streptococcus equi subsp. zooepidemicus 0.09 437 437 S 1310 Streptococcus sobrinus 0.05 244 244 S 1346 Streptococcus iniae 0.03 163 163 S 68892 Streptococcus infantis 0.03 162 162 S 1345 Streptococcus ferus 0.03 155 36 S 1313 Streptococcus pneumoniae 0.02 87 87 S1 869311 Streptococcus pneumoniae SPN032672 0.01 32 32 S1 1159083 Streptococcus pneumoniae PCS8235 0.03 135 135 S 1111760 Streptococcus troglodytae 0.02 91 91 S 82348 Streptococcus pluranimalium 0.01 46 40 G1 2608887 unclassified Streptococcus 0.00 6 6 S 2420310 Streptococcus sp. FDAARGOS_522 0.01 44 44 S 2173853 Streptococcus chenjunshii 0.01 36 36 S 2686210 Streptococcus ruminicola 0.01 31 31 S 1304 Streptococcus salivarius 0.01 27 26 S 1307 Streptococcus suis 0.00 1 1 S1 1340847 Streptococcus suis T15 0.00 22 0 G1 671232 Streptococcus anginosus group 0.00 22 22 S 1328 Streptococcus anginosus 0.00 19 19 S 2021971 Streptococcus respiraculi 0.00 13 0 S 1303 Streptococcus oralis 0.00 13 13 S1 1458253 Streptococcus oralis subsp. dentisani 0.00 4 4 S 1309 Streptococcus mutans 0.00 3 3 S 1825069 Streptococcus marmotae 0.00 3 3 S 102886 Streptococcus didelphis 0.00 1 1 S 1156431 Streptococcus ilei 0.00 1 1 S 1349 Streptococcus uberis 0.00 1 1 S 2490633 Streptococcus periodonticum 0.00 1 1 S 149016 Streptococcus urinalis 0.57 2649 1057 G 1357 Lactococcus 0.18 829 795 S 1359 Lactococcus cremoris 0.01 34 0 S1 2816960 Lactococcus cremoris subsp. cremoris 0.01 34 34 S2 1104322 Lactococcus cremoris subsp. cremoris A76 0.14 677 675 S 1358 Lactococcus lactis 0.00 2 0 S1 1360 Lactococcus lactis subsp. lactis 0.00 2 2 S2 44688 Lactococcus lactis subsp. lactis bv. diacetylactis 0.01 55 0 S 1363 Lactococcus garvieae 0.01 55 55 S1 1890280 Lactococcus garvieae subsp. garvieae 0.00 22 22 S 1940789 Lactococcus petauri 0.00 5 5 S 1151742 Lactococcus taiwanensis 0.00 4 4 S 1366 Lactococcus raffinolactis 0.01 44 0 G 1930830 Floricoccus 0.01 44 44 S 1859475 Floricoccus penangensis 0.70 3275 341 F 186827 Aerococcaceae 0.34 1601 0 G 2862144 Ruoffia 0.34 1601 1601 S 87458 Ruoffia tabacinasalis 0.16 769 194 G 1375 Aerococcus 0.09 444 444 S 87541 Aerococcus christensenii 0.01 70 70 S 3078812 Aerococcus tenax 0.01 59 59 S 128944 Aerococcus urinaehominis 0.00 1 1 S 51665 Aerococcus urinaeequi 0.00 1 1 S 2976810 Aerococcus mictus 0.11 531 0 G 66831 Facklamia 0.11 531 531 S 178214 Facklamia hominis 0.00 23 0 G 13075 Globicatella 0.00 23 23 S 13076 Globicatella sanguinis 0.00 10 0 G 89092 Ignavigranum 0.00 10 10 S 89093 Ignavigranum ruoffiae 0.20 943 87 F 186828 Carnobacteriaceae 0.12 562 0 G 117563 Granulicatella 0.10 449 449 S 137732 Granulicatella elegans 0.02 113 113 S 46124 Granulicatella adiacens 0.03 155 0 G 82800 Desemzia 0.03 155 155 S 82801 Desemzia incerta 0.01 63 18 G 2747 Carnobacterium 0.01 44 17 S 2751 Carnobacterium maltaromaticum 0.01 27 27 S1 1234679 Carnobacterium maltaromaticum LMA28 0.00 1 1 G1 257487 unclassified Carnobacterium 0.01 28 1 G 29393 Dolosigranulum 0.01 27 27 S 29394 Dolosigranulum pigrum 0.01 27 0 G 191769 Marinilactibacillus 0.01 27 0 G1 2632303 unclassified Marinilactibacillus 0.01 27 27 S 1911586 Marinilactibacillus sp. 15R 0.00 11 0 G 82802 Trichococcus 0.00 11 0 G1 189664 environmental samples 0.00 11 11 S 189665 uncultured Trichococcus sp. 0.00 10 7 G 1470540 Jeotgalibaca 0.00 2 2 S 2496265 Jeotgalibaca ciconiae 0.00 1 1 S 1868793 Jeotgalibaca porci 0.21 1005 7 C 186801 Clostridia 0.17 800 24 O 186802 Eubacteriales 0.11 492 1 O1 538999 Eubacteriales incertae sedis 0.10 478 0 G 1392389 Intestinimonas 0.10 478 478 S 1297617 Intestinimonas butyriciproducens 0.00 12 0 F 539000 Clostridiales Family XVII. Incertae Sedis 0.00 12 12 G 73918 Thermaerobacter 0.00 1 0 G 1918454 Flintibacter 0.00 1 0 G1 2610894 unclassified Flintibacter 0.00 1 1 S 2610895 Flintibacter sp. KGMB00164 0.02 94 2 F 31979 Clostridiaceae 0.02 92 7 G 1485 Clostridium 0.01 50 50 S 1502 Clostridium perfringens 0.00 10 9 S 1491 Clostridium botulinum 0.00 1 1 S1 1408283 Clostridium botulinum CDC_1436 0.00 9 9 S 1492 Clostridium butyricum 0.00 7 0 G1 2614128 unclassified Clostridium 0.00 4 4 S 3070996 Clostridium sp. MB40-C1 0.00 1 1 S 641107 Clostridium sp. DL-VIII 0.00 1 1 S 1042156 Clostridium sp. SY8519 0.00 1 1 S 2779445 Clostridium sp. 'deep sea' 0.00 2 2 S 36839 Clostridium felsineum 0.00 2 2 S 1520 Clostridium beijerinckii 0.00 2 2 S 1534 Clostridium kluyveri 0.00 1 1 S 36845 Clostridium intestinale 0.00 1 0 S 1513 Clostridium tetani 0.00 1 1 S1 1231072 Clostridium tetani 12124569 0.00 1 1 S 182773 Clostridium isatidis 0.01 66 13 F 216572 Oscillospiraceae 0.01 29 1 G 1263 Ruminococcus 0.01 25 25 S 2564099 Ruminococcus bovis 0.00 1 1 S 438033 Ruminococcus gauvreauii 0.00 1 1 S 1161942 Ruminococcus champanellensis 0.00 1 1 G1 2608920 unclassified Ruminococcus 0.00 17 0 G 459786 Oscillibacter 0.00 17 17 S 2763056 Oscillibacter hominis 0.00 2 0 G 2842531 Solibaculum 0.00 2 2 S 2780922 Solibaculum mannosilyticum 0.00 2 0 G 946234 Flavonifractor 0.00 2 2 S 292800 Flavonifractor plautii 0.00 2 0 G 2038676 Paludihabitans 0.00 2 0 G1 2644543 unclassified Paludihabitans 0.00 2 2 S 3070656 Paludicola sp. MB14-C6 0.00 1 0 G 35829 Acetivibrio 0.00 1 1 S 1677857 Acetivibrio saccincola 0.01 50 0 F 2867375 Desulfallaceae 0.01 50 26 G 2867376 Desulfoscipio 0.01 24 0 G1 2867378 unclassified Desulfoscipio 0.01 24 24 S 3144975 Desulfoscipio sp. XC116 0.01 31 0 F 186807 Peptococcaceae 0.01 29 1 G 2916693 Desulforamulus 0.01 27 27 S 1833852 Desulforamulus ferrireducens 0.00 1 0 S 1564 Desulforamulus ruminis 0.00 1 1 S1 696281 Desulforamulus ruminis DSM 2154 0.00 1 0 G 2282742 Desulfofarcimen 0.00 1 0 S 58138 Desulfofarcimen acetoxidans 0.00 1 1 S1 485916 Desulfofarcimen acetoxidans DSM 771 0.00 1 0 G 2840454 Candidatus Formimonas 0.00 1 1 S 1761012 Candidatus Formimonas warabiya 0.01 31 0 F 3046368 Aristaeellaceae 0.01 31 31 G 3046369 Aristaeella 0.00 7 1 F 31984 Heliobacteriaceae 0.00 6 0 G 79598 Heliorestis 0.00 6 6 S 356322 Heliorestis convoluta 0.00 2 0 F 186806 Eubacteriaceae 0.00 2 0 G 1730 Eubacterium 0.00 2 2 S 53442 Eubacterium callanderi 0.00 2 1 F 3082771 Acutalibacteraceae 0.00 1 1 G 1738645 Caproiciproducens 0.00 1 0 F 2937910 Desulfotomaculaceae 0.00 1 0 G 1562 Desulfotomaculum 0.00 1 0 S 1565 Desulfotomaculum nigrificans 0.00 1 1 S1 868595 Desulfotomaculum nigrificans CO-1-SRB 0.02 107 0 O 53433 Halanaerobiales 0.02 97 0 F 53434 Halobacteroidaceae 0.02 97 0 G 42417 Halobacteroides 0.02 97 0 S 42422 Halobacteroides halobius 0.02 97 97 S1 748449 Halobacteroides halobius DSM 5150 0.00 7 0 O1 387655 Halanaerobiales incertae sedis 0.00 7 0 G 1769008 Anoxybacter 0.00 7 7 S 1323375 Anoxybacter fermentans 0.00 2 1 F 972 Halanaerobiaceae 0.00 1 1 G 2330 Halanaerobium 0.00 1 0 F 3046412 Halothermotrichaceae 0.00 1 0 G 32636 Halothermothrix 0.00 1 0 S 31909 Halothermothrix orenii 0.00 1 1 S1 373903 Halothermothrix orenii H 168 0.01 51 0 O 3082720 Peptostreptococcales 0.01 50 41 F 186804 Peptostreptococcaceae 0.00 6 0 G 1870884 Clostridioides 0.00 6 2 S 1496 Clostridioides difficile 0.00 4 4 S1 479832 Clostridioides difficile QCD-76w55 0.00 2 0 G 1501226 Romboutsia 0.00 2 0 G1 2626894 unclassified Romboutsia 0.00 2 2 S 2708053 Romboutsia sp. 13368 0.00 1 1 G 1505652 Terrisporobacter 0.00 1 0 F 3030910 Anaerovoracaceae 0.00 1 1 G 86331 Mogibacterium 0.01 35 0 O 3085636 Lachnospirales 0.01 35 7 F 186803 Lachnospiraceae 0.00 11 0 G 572511 Blautia 0.00 10 0 G1 2648079 unclassified Blautia 0.00 10 10 S 2479767 Blautia sp. SC05B48 0.00 1 0 S 40520 Blautia obeum 0.00 1 1 S1 411459 Blautia obeum ATCC 29174 0.00 5 0 G 28050 Lachnospira 0.00 5 5 S 39485 Lachnospira eligens 0.00 5 0 G 2997360 Anaeropeptidivorans 0.00 5 5 S 2934315 Anaeropeptidivorans aminofermentans 0.00 2 0 G 2383 Candidatus Epulonipiscium 0.00 2 2 S 420336 Candidatus Epulonipiscium viviparus 0.00 2 0 G 2719231 Lacrimispora 0.00 2 2 S 384636 Lacrimispora xylanisolvens 0.00 1 0 G 1843210 Anaerocolumna 0.00 1 1 S 1727145 Anaerocolumna chitinilytica 0.00 1 0 G 1649459 Hungatella 0.00 1 1 S 154046 Hungatella hathewayi 0.00 1 0 G 1506577 Tyzzerella 0.00 1 1 S 36835 [Clostridium] colinum 0.00 2 0 O 485256 Natranaerobiales 0.00 2 0 F 2807496 Natranaerofabaceae 0.00 2 0 G 2807497 Natranaerofaba 0.00 2 2 S 2742683 Natranaerofaba carboxydovora 0.00 2 0 O 3082768 Christensenellales 0.00 2 0 F 990719 Christensenellaceae 0.00 2 2 G 990721 Christensenella 0.00 1 0 O 68295 Thermoanaerobacterales 0.00 1 0 F 186814 Thermoanaerobacteraceae 0.00 1 0 G 28895 Thermoanaerobacterium 0.00 1 0 G1 2622527 unclassified Thermoanaerobacterium 0.00 1 1 S 3061989 Thermoanaerobacterium sp. CMT5567-10 0.03 139 0 C 526524 Erysipelotrichia 0.03 139 1 O 526525 Erysipelotrichales 0.02 85 0 F 128827 Erysipelotrichaceae 0.01 44 0 G 1918536 Longicatena 0.01 44 44 S 1796635 Longicatena caecimuris 0.01 38 6 G 1647 Erysipelothrix 0.00 23 0 G1 2624170 unclassified Erysipelothrix 0.00 22 22 S 2714928 Erysipelothrix sp. HDW6A 0.00 1 1 S 2714929 Erysipelothrix sp. HDW6B 0.00 5 5 S 1514105 Erysipelothrix larvae 0.00 3 3 S 1648 Erysipelothrix rhusiopathiae 0.00 1 1 S 2485784 Erysipelothrix piscisicarius 0.00 3 0 G 3059504 Allocoprobacillus 0.00 3 3 S 2944914 Allocoprobacillus halotolerans 0.01 50 0 F 2810281 Turicibacteraceae 0.01 50 38 G 191303 Turicibacter 0.00 12 0 G1 2638206 unclassified Turicibacter 0.00 12 12 S 1712675 Turicibacter sp. H121 0.00 3 0 F 2810280 Coprobacillaceae 0.00 2 0 G 2943184 Tannockella 0.00 2 2 S 2899121 Tannockella kyphosi 0.00 1 1 G 3025755 Thomasclavelia 0.01 31 0 C 909932 Negativicutes 0.01 24 1 O 909929 Selenomonadales 0.00 16 0 F 1843490 Sporomusaceae 0.00 12 0 G 81463 Anaeromusa 0.00 12 0 G1 673272 environmental samples 0.00 12 12 S 673273 uncultured Anaeromusa sp. 0.00 2 1 G 2375 Sporomusa 0.00 1 0 S 47679 Sporomusa sphaeroides 0.00 1 1 S1 1337886 Sporomusa sphaeroides DSM 2875 0.00 2 0 G 2093783 Methylomusa 0.00 2 2 S 1930071 Methylomusa anaerophila 0.00 7 2 F 1843491 Selenomonadaceae 0.00 3 3 G 158846 Megamonas 0.00 2 1 G 970 Selenomonas 0.00 1 1 G1 2637378 unclassified Selenomonas 0.00 5 0 O 1843489 Veillonellales 0.00 5 0 F 31977 Veillonellaceae 0.00 5 5 G 39948 Dialister 0.00 2 0 O 1843488 Acidaminococcales 0.00 2 0 F 909930 Acidaminococcaceae 0.00 2 0 G 904 Acidaminococcus 0.00 2 2 S 187327 Acidaminococcus intestini 0.00 6 0 C 1737404 Tissierellia 0.00 5 0 O 1737405 Tissierellales 0.00 4 0 F 1570339 Peptoniphilaceae 0.00 2 0 G 162289 Peptoniphilus 0.00 2 2 S 3036303 Peptoniphilus genitalis 0.00 1 0 G 31983 Helcococcus 0.00 1 1 S 72026 Helcococcus ovis 0.00 1 0 G 150022 Finegoldia 0.00 1 1 S 1260 Finegoldia magna 0.00 1 0 F 2992719 Tepidimicrobiaceae 0.00 1 0 G 2794837 Schnuerera 0.00 1 0 S 45497 Schnuerera ultunensis 0.00 1 1 S1 1288971 [Clostridium] ultunense Esp 0.00 1 0 C1 1737407 Tissierellia incertae sedis 0.00 1 0 G 1582879 Ezakiella 0.00 1 1 S 1852374 Ezakiella massiliensis 0.00 3 0 C 1676648 Limnochordia 0.00 3 0 O 1676649 Limnochordales 0.00 3 0 F 1676650 Limnochordaceae 0.00 3 0 G 1676651 Limnochorda 0.00 2 0 G1 2618576 unclassified Limnochorda 0.00 2 2 S 3109565 Limnochorda sp. L945t 0.00 1 1 S 1555112 Limnochorda pilosa 0.00 2 0 P1 2840488 Bacillota incertae sedis 0.00 2 0 O 3071001 Caldicellulosiruptorales 0.00 2 0 F 3071002 Caldicellulosiruptoraceae 0.00 2 2 G 44000 Caldicellulosiruptor 0.31 1444 9 P 201174 Actinomycetota 0.30 1403 64 C 1760 Actinomycetes 0.23 1068 4 O 85007 Mycobacteriales 0.22 1033 0 F 1653 Corynebacteriaceae 0.22 1033 112 G 1716 Corynebacterium 0.18 861 0 S 1032851 Corynebacterium nuruki 0.18 861 861 S1 863239 Corynebacterium nuruki S6-4 0.00 10 0 S 441501 Corynebacterium massiliense 0.00 10 10 S1 1121364 Corynebacterium massiliense DSM 45435 0.00 8 8 S 108486 Corynebacterium falsenii 0.00 6 6 S 2080740 Corynebacterium yudongzhengii 0.00 5 0 G1 2624378 unclassified Corynebacterium 0.00 4 4 S 1487956 Corynebacterium sp. ATCC 6931 0.00 1 1 S 2599641 Corynebacterium sp. sy039 0.00 4 0 S 575200 Corynebacterium maris 0.00 4 4 S1 1224163 Corynebacterium maris DSM 45190 0.00 4 4 S 161895 Corynebacterium phocae 0.00 4 4 S 38284 Corynebacterium accolens 0.00 3 0 S 1121358 Corynebacterium doosanense 0.00 3 3 S1 558173 Corynebacterium doosanense CAU 212 = DSM 45436 0.00 2 2 S 679663 Corynebacterium canis 0.00 2 2 S 1719 Corynebacterium pseudotuberculosis 0.00 2 2 S 1758466 Corynebacterium faecale 0.00 2 0 S 1230998 Corynebacterium frankenforstense 0.00 2 2 S1 1437875 Corynebacterium frankenforstense DSM 45800 0.00 1 1 S 1737425 Corynebacterium provencense 0.00 1 1 S 61592 Corynebacterium durum 0.00 1 1 S 2055947 Corynebacterium heidelbergense 0.00 1 1 S 43768 Corynebacterium matruchotii 0.00 1 1 S 2675218 Corynebacterium comes 0.00 1 0 S 1718 Corynebacterium glutamicum 0.00 1 1 S1 1079988 Corynebacterium glutamicum ATCC 14067 0.00 1 1 S 2709394 Corynebacterium lizhenjunii 0.00 1 1 S 2675219 Corynebacterium occultum 0.00 14 0 F 1762 Mycobacteriaceae 0.00 14 1 G 1763 Mycobacterium 0.00 12 0 G1 77643 Mycobacterium tuberculosis complex 0.00 12 11 S 1773 Mycobacterium tuberculosis 0.00 1 0 S1 1765 Mycobacterium tuberculosis variant bovis 0.00 1 0 S2 33892 Mycobacterium tuberculosis variant bovis BCG 0.00 1 1 S3 561275 Mycobacterium tuberculosis variant bovis BCG str. Tokyo 172 0.00 1 1 S 1769 Mycobacterium leprae 0.00 10 0 F 2805586 Lawsonellaceae 0.00 10 0 G 1847725 Lawsonella 0.00 10 10 S 1528099 Lawsonella clevelandensis 0.00 4 0 F 85025 Nocardiaceae 0.00 3 3 G 1827 Rhodococcus 0.00 1 1 G 1817 Nocardia 0.00 2 0 F 85026 Gordoniaceae 0.00 2 0 G 2053 Gordonia 0.00 1 0 G1 2657482 unclassified Gordonia (in: high G+C Gram-positive bacteria) 0.00 1 1 S 2742602 Gordonia sp. X0973 0.00 1 1 S 84595 Gordonia polyisoprenivorans 0.00 1 0 F 85029 Dietziaceae 0.00 1 0 G 37914 Dietzia 0.00 1 1 S 499555 Dietzia timorensis 0.03 142 2 O 85006 Micrococcales 0.02 72 0 F 85019 Brevibacteriaceae 0.02 72 70 G 1696 Brevibacterium 0.00 2 2 S 33889 Brevibacterium casei 0.01 61 0 F 85016 Cellulomonadaceae 0.01 61 61 G 1707 Cellulomonas 0.00 6 1 F 1268 Micrococcaceae 0.00 3 0 G 1742993 Pseudarthrobacter 0.00 3 0 G1 2647000 unclassified Pseudarthrobacter 0.00 3 3 S 2973976 Pseudarthrobacter sp. NS4 0.00 1 1 G 57493 Kocuria 0.00 1 0 G 1742989 Glutamicibacter 0.00 1 1 S 1775880 Glutamicibacter mishrai 0.00 1 0 F 85023 Microbacteriaceae 0.00 1 1 G 33877 Agromyces 0.01 48 0 O 2037 Actinomycetales 0.01 48 2 F 2049 Actinomycetaceae 0.01 37 0 G 2529408 Schaalia 0.01 37 0 G1 2691889 unclassified Schaalia 0.01 37 37 S 2758572 Schaalia sp. JY-X169 0.00 4 2 G 1654 Actinomyces 0.00 2 0 G1 2609248 unclassified Actinomyces 0.00 2 2 S 2708340 Actinomyces sp. zg-332 0.00 2 1 G 2692113 Gleimia 0.00 1 1 S 595468 Gleimia hominis 0.00 2 0 G 2888879 Nanchangia 0.00 2 2 S 2692125 Nanchangia anserum 0.00 1 0 G 76833 Actinobaculum 0.00 1 0 G1 2609299 unclassified Actinobaculum 0.00 1 1 S 2495645 Actinobaculum sp. 313 0.01 45 0 O 85011 Kitasatosporales 0.01 45 0 F 2062 Streptomycetaceae 0.01 45 4 G 1883 Streptomyces 0.01 29 1 G1 2593676 unclassified Streptomyces 0.00 16 16 S 3075825 Streptomyces sp. AM8-1-1 0.00 8 8 S 3062782 Streptomyces sp. HUAS CX7 0.00 3 3 S 3043734 Streptomyces sp. BPTC-684 0.00 1 1 S 2987533 Streptomyces sp. BPPL-273 0.00 4 4 S 35621 Streptomyces mobaraensis 0.00 3 0 G1 1477431 Streptomyces albidoflavus group 0.00 3 3 S 1886 Streptomyces albidoflavus 0.00 2 2 S 1690221 Streptomyces spongiicola 0.00 1 1 S 1890 Streptomyces antibioticus 0.00 1 1 S 2768066 Streptomyces roseirectus 0.00 1 1 S 66425 Streptomyces luteoverticillatus 0.00 7 0 O 85014 Glycomycetales 0.00 7 0 F 85034 Glycomycetaceae 0.00 7 0 G 283810 Stackebrandtia 0.00 7 0 S 283811 Stackebrandtia nassauensis 0.00 7 7 S1 446470 Stackebrandtia nassauensis DSM 44728 0.00 7 0 O 85009 Propionibacteriales 0.00 7 1 F 31957 Propionibacteriaceae 0.00 4 3 G 29404 Microlunatus 0.00 1 0 G1 2619695 unclassified Microlunatus 0.00 1 1 S 2672569 Microlunatus sp. Gsoil 973 0.00 2 1 G 1912216 Cutibacterium 0.00 1 1 S 1747 Cutibacterium acnes 0.00 6 0 O 85004 Bifidobacteriales 0.00 6 1 F 31953 Bifidobacteriaceae 0.00 5 1 G 1678 Bifidobacterium 0.00 4 0 S 216816 Bifidobacterium longum 0.00 2 2 S1 1679 Bifidobacterium longum subsp. longum 0.00 2 2 S1 1682 Bifidobacterium longum subsp. infantis 0.00 6 0 O 85012 Streptosporangiales 0.00 5 0 F 2004 Streptosporangiaceae 0.00 2 0 G 2005 Microbispora 0.00 2 2 S 568844 Microbispora hainanensis 0.00 2 0 G 147067 Thermobispora 0.00 2 2 S 2006 Thermobispora bispora 0.00 1 0 G 83681 Nonomuraea 0.00 1 0 G1 2593643 unclassified Nonomuraea 0.00 1 1 S 2976002 Nonomuraea sp. NBC_00507 0.00 1 0 F 83676 Nocardiopsaceae 0.00 1 0 G 2013 Nocardiopsis 0.00 1 1 S 2014 Nocardiopsis dassonvillei 0.00 4 0 O 85008 Micromonosporales 0.00 4 3 F 28056 Micromonosporaceae 0.00 1 1 G 1873 Micromonospora 0.00 3 0 O 85013 Frankiales 0.00 3 0 F 74712 Frankiaceae 0.00 3 0 G 1854 Frankia 0.00 3 3 S 106370 Frankia casuarinae 0.00 1 0 O 85010 Pseudonocardiales 0.00 1 0 F 2070 Pseudonocardiaceae 0.00 1 0 G 165301 Lentzea 0.00 1 0 G1 2643253 unclassified Lentzea 0.00 1 1 S 2951806 Lentzea sp. HUAS12 0.00 1 0 O 622452 Kineosporiales 0.00 1 0 F 83778 Kineosporiaceae 0.00 1 1 G 33981 Kineococcus 0.00 1 0 O 2039638 Candidatus Nanopelagicales 0.00 1 0 F 2162846 Candidatus Nanopelagicaceae 0.00 1 0 G 622681 Candidatus Planktophila 0.00 1 1 S 1884907 Candidatus Planktophila vernalis 0.01 26 0 C 84992 Acidimicrobiia 0.01 26 0 O 84993 Acidimicrobiales 0.01 25 0 F 633392 Iamiaceae 0.01 24 0 G 467975 Iamia 0.01 24 24 S 467976 Iamia majanohamensis 0.00 1 0 G 3075137 Dermatobacter 0.00 1 1 S 2884263 Dermatobacter hominis 0.00 1 0 F 2448023 Ilumatobacteraceae 0.00 1 0 G 682522 Ilumatobacter 0.00 1 0 S 467094 Ilumatobacter coccineus 0.00 1 1 S1 1313172 Ilumatobacter coccineus YM16-304 0.00 3 0 C 1497346 Thermoleophilia 0.00 1 0 O 588673 Solirubrobacterales 0.00 1 0 F 2600303 Baekduiaceae 0.00 1 0 G 3231543 Svornostia 0.00 1 1 S 2898438 Svornostia abyssi 0.00 1 0 O 588674 Thermoleophilales 0.00 1 0 F 320796 Thermoleophilaceae 0.00 1 0 G 192992 Thermoleophilum 0.00 1 1 S 29539 Thermoleophilum album 0.00 1 0 O 2843198 Miltoncostaeales 0.00 1 0 F 2843199 Miltoncostaeaceae 0.00 1 1 G 2843200 Miltoncostaea 0.00 2 0 C 908620 Nitriliruptoria 0.00 2 0 O 908621 Euzebyales 0.00 2 0 F 908622 Euzebyaceae 0.00 2 0 G 908623 Euzebya 0.00 2 2 S 1608957 Euzebya pacifica 0.00 1 0 C 84998 Coriobacteriia 0.00 1 0 O 84999 Coriobacteriales 0.00 1 1 F 1643824 Atopobiaceae 0.06 261 119 P 544448 Mycoplasmatota 0.02 91 1 C 31969 Mollicutes 0.01 50 0 O 2085 Mycoplasmatales 0.01 37 0 F 2092 Mycoplasmataceae 0.01 37 2 G 2093 Mycoplasma 0.00 18 0 G1 656088 Mycoplasma mycoides group 0.00 18 0 S 2095 Mycoplasma capricolum 0.00 18 18 S1 40480 Mycoplasma capricolum subsp. capripneumoniae 0.00 16 0 G1 2683645 unclassified Mycoplasma 0.00 16 16 S 1749074 Mycoplasma sp. (ex Biomphalaria glabrata) 0.00 1 0 S 141391 Candidatus Mycoplasma haematolamae 0.00 1 1 S1 1212765 Candidatus Mycoplasma haematolamae str. Purdue 0.00 11 0 O1 1665628 unclassified Mycoplasmatales 0.00 11 11 S 1609546 endosymbiont DhMRE of Dentiscutata heterogama 0.00 2 0 F 3132029 Candidatus Hepatoplasmataceae 0.00 2 0 G 295595 Candidatus Hepatoplasma 0.00 2 0 S 295596 Candidatus Hepatoplasma crinochetorum 0.00 2 2 S1 1427984 Candidatus Hepatoplasma crinochetorum Av 0.01 24 0 O 186328 Entomoplasmatales 0.01 24 0 F 2131 Spiroplasmataceae 0.01 24 11 G 2132 Spiroplasma 0.00 7 0 S 301585 Spiroplasma platyhelix 0.00 7 7 S1 1276218 Spiroplasma platyhelix PALS-1 0.00 6 4 G1 2637901 unclassified Spiroplasma 0.00 2 2 S 3066303 Spiroplasma endosymbiont of Sarcophaga carnaria 0.00 16 0 O 186329 Acholeplasmatales 0.00 16 9 F 2146 Acholeplasmataceae 0.00 7 7 G 33926 Candidatus Phytoplasma 0.01 49 0 O 2790996 Mycoplasmoidales 0.01 38 2 F 2790998 Mycoplasmoidaceae 0.00 23 0 G 2791001 Malacoplasma 0.00 23 0 S 28227 Malacoplasma penetrans 0.00 23 23 S1 272633 Malacoplasma penetrans HF-2 0.00 13 12 G 2995234 Mycoplasmoides 0.00 1 1 S 92758 Mycoplasmoides fastidiosum 0.00 11 0 F 2895623 Metamycoplasmataceae 0.00 8 7 G 2895509 Metamycoplasma 0.00 1 1 S 2098 Metamycoplasma hominis 0.00 2 0 G 2767358 Mycoplasmopsis 0.00 1 1 S 114883 Mycoplasmopsis equigenitalium 0.00 1 1 S 33923 Mycoplasmopsis felis 0.00 1 0 G 2923352 Mesomycoplasma 0.00 1 0 S 2118 [Mycoplasma] mobile 0.00 1 1 S1 267748 Mycoplasma mobile 163K 0.00 2 0 C 1912503 Candidatus Izimaplasma 0.00 2 0 O 2975519 Candidatus Izemoplasmatales 0.00 1 0 F 2975520 Candidatus Izemoplasmataceae 0.00 1 0 G 2975521 Candidatus Xianfuyuplasma 0.00 1 1 S 2782163 Candidatus Xianfuyuplasma coldseepsis 0.00 1 0 F 3078170 Hujiaoplasmataceae 0.00 1 0 G 3078171 Hujiaoplasma 0.00 1 1 S 2725268 Hujiaoplasma nucleasis 0.01 63 1 P 200795 Chloroflexota 0.01 25 0 C 32061 Chloroflexia 0.00 22 0 O 3139175 Candidatus Chloroheliales 0.00 22 0 F 3139177 Candidatus Chloroheliaceae 0.00 22 0 G 3139173 Candidatus Chlorohelix 0.00 22 22 S 3003348 Candidatus Chlorohelix allophototropha 0.00 3 0 O 32064 Chloroflexales 0.00 3 0 O1 1508595 Roseiflexineae 0.00 3 0 F 1508635 Roseiflexaceae 0.00 3 0 G 120961 Roseiflexus 0.00 3 0 S 120962 Roseiflexus castenholzii 0.00 3 3 S1 383372 Roseiflexus castenholzii DSM 13941 0.00 17 0 C 2682225 Tepidiformia 0.00 17 0 O 2682226 Tepidiformales 0.00 17 0 F 2682227 Tepidiformaceae 0.00 17 17 G 2682228 Tepidiforma 0.00 9 0 C 292625 Anaerolineae 0.00 9 0 O 292629 Anaerolineales 0.00 9 3 F 292628 Anaerolineaceae 0.00 6 0 G 233189 Anaerolinea 0.00 6 0 S 167964 Anaerolinea thermophila 0.00 6 6 S1 926569 Anaerolinea thermophila UNI-1 0.00 6 0 C 301297 Dehalococcoidia 0.00 5 0 O 1202465 Dehalococcoidales 0.00 5 0 F 1202464 Dehalococcoidaceae 0.00 5 5 G 61434 Dehalococcoides 0.00 1 0 C1 648176 SAR202 cluster 0.00 1 0 O 3143247 Candidatus Lucifugimonadales 0.00 1 0 F 3143248 Candidatus Lucifugimonadaceae 0.00 1 0 G 3143249 Candidatus Lucifugimonas 0.00 1 1 S 3038979 Candidatus Lucifugimonas marina 0.00 3 0 C 388447 Ktedonobacteria 0.00 3 0 O 388448 Ktedonobacterales 0.00 3 0 F 2692416 Ktedonosporobacteraceae 0.00 3 0 G 2692417 Ktedonosporobacter 0.00 3 3 S 2509675 Ktedonosporobacter rubrisoli 0.00 1 0 P1 167963 Chloroflexota incertae sedis 0.00 1 0 G 262406 Thermobaculum 0.00 1 0 S 166501 Thermobaculum terrenum 0.00 1 1 S1 525904 Thermobaculum terrenum ATCC BAA-798 0.00 1 0 C 2364196 Candidatus Thermofonsia 0.00 1 0 O 2364208 Phototrophicales 0.00 1 0 F 2922432 Phototrophicaceae 0.00 1 0 G 2922426 Phototrophicus 0.00 1 1 S 2710758 Phototrophicus methaneseepsis 0.00 8 0 D2 1798711 Cyanobacteriota/Melainabacteria group 0.00 8 0 P 1117 Cyanobacteriota 0.00 8 1 C 3028117 Cyanophyceae 0.00 4 0 C1 1301283 Oscillatoriophycideae 0.00 3 0 O 1118 Chroococcales 0.00 2 0 F 2815910 Geminocystaceae 0.00 2 0 G 669357 Geminocystis 0.00 2 0 G1 2625037 unclassified Geminocystis 0.00 2 2 S 1615909 Geminocystis sp. NIES-3708 0.00 1 0 F 1890449 Microcystaceae 0.00 1 0 G 1125 Microcystis 0.00 1 0 G1 2643300 unclassified Microcystis 0.00 1 1 S 1967666 Microcystis sp. MC19 0.00 1 0 O 1150 Oscillatoriales 0.00 1 0 F 1892254 Oscillatoriaceae 0.00 1 0 G 1158 Oscillatoria 0.00 1 0 S 118323 Oscillatoria acuminata 0.00 1 1 S1 56110 Oscillatoria acuminata PCC 6304 0.00 2 0 O 1161 Nostocales 0.00 2 0 F 2661849 Calotrichaceae 0.00 2 0 G 1186 Calothrix 0.00 2 2 G1 2619626 unclassified Calothrix 0.00 1 0 O 3079749 Leptolyngbyales 0.00 1 0 F 1890438 Leptolyngbyaceae 0.00 1 0 F1 3081713 Leptolyngbya group 0.00 1 0 G 47251 Leptolyngbya 0.00 1 0 G1 2650499 unclassified Leptolyngbya 0.00 1 1 S 2812896 Leptolyngbya sp. 7M 0.00 5 0 P 3027942 Thermomicrobiota 0.00 5 0 C 189775 Thermomicrobia 0.00 5 0 O 85001 Sphaerobacterales 0.00 5 0 O1 255728 Sphaerobacterineae 0.00 5 0 F 85002 Sphaerobacteraceae 0.00 5 0 G 2056 Sphaerobacter 0.00 5 0 S 2057 Sphaerobacter thermophilus 0.00 5 5 S1 479434 Sphaerobacter thermophilus DSM 20745 0.00 4 0 P 1297 Deinococcota 0.00 4 0 C 188787 Deinococci 0.00 4 0 O 118964 Deinococcales 0.00 4 0 F 183710 Deinococcaceae 0.00 4 1 G 1298 Deinococcus 0.00 1 1 S 32062 Deinococcus radiophilus 0.00 1 1 S 1768108 Deinococcus actinosclerus 0.00 1 0 S 432329 Deinococcus peraridilitoris 0.00 1 1 S1 937777 Deinococcus peraridilitoris DSM 19664 0.00 3 0 P 67819 Armatimonadota 0.00 3 0 C 1077257 Chthonomonadia 0.00 3 0 O 1077263 Chthonomonadales 0.00 3 0 F 1077264 Chthonomonadaceae 0.00 3 0 G 1077265 Chthonomonas 0.00 3 0 S 454171 Chthonomonas calidirosea 0.00 3 3 S1 1303518 Chthonomonas calidirosea T49 24.56 114923 175 P 1224 Pseudomonadota 23.82 111443 1876 C 28211 Alphaproteobacteria 23.09 108055 85 O 204441 Rhodospirillales 23.05 107864 2825 F 433 Acetobacteraceae 22.05 103164 42502 G 434 Acetobacter 12.12 56699 56699 S 1076596 Acetobacter persici 0.52 2416 2416 S 2592655 Acetobacter vaccinii 0.17 817 0 G1 2628570 unclassified Acetobacter 0.17 817 817 S 3157859 Acetobacter sp. A11-2 0.12 543 543 S 65959 Acetobacter pomorum 0.04 187 0 G1 151157 Acetobacter subgen. Acetobacter 0.04 187 187 S 435 Acetobacter aceti 0.08 358 0 G 1079922 Commensalibacter 0.08 358 358 S 2070537 Commensalibacter melissae 0.06 259 0 G 504465 Rhodovastum 0.06 259 259 S 504468 Rhodovastum atsumiense 0.05 255 23 G 125216 Roseomonas 0.05 226 226 S 2768162 Roseomonas haemaphysalidis 0.00 5 5 S 1750527 Roseomonas fluvialis 0.00 1 1 S 257708 Roseomonas gilardii 0.04 200 76 G 441 Gluconobacter 0.02 88 3 S 442 Gluconobacter oxydans 0.02 85 85 S1 1288313 Gluconobacter oxydans DSM 3504 0.01 32 32 S 318683 Gluconobacter albidus 0.00 4 4 S 38308 Gluconobacter frateurii 0.03 163 23 G 1434011 Komagataeibacter 0.02 80 80 S 65958 Komagataeibacter oboediens 0.01 31 31 S 265960 Komagataeibacter nataicola 0.01 25 0 S 1177712 Komagataeibacter medellinensis 0.01 25 25 S1 634177 Komagataeibacter medellinensis NBRC 3288 0.00 2 2 S 265959 Komagataeibacter saccharivorans 0.00 1 1 S 28448 Komagataeibacter xylinus 0.00 1 1 S 33995 Komagataeibacter europaeus 0.03 162 137 G 1602345 Parasaccharibacter 0.00 14 0 G1 2626400 unclassified Parasaccharibacter 0.00 14 14 S 2268025 Parasaccharibacter sp. TMW 2.1888 0.00 11 11 S 1510841 Parasaccharibacter apium 0.02 115 0 G 3027666 Aristophania 0.02 115 115 S 2697033 Aristophania vespae 0.01 61 0 G 364409 Granulibacter 0.01 61 61 S 364410 Granulibacter bethesdensis 0.01 48 0 G 3097638 Candidatus Kirkpatrickella 0.01 48 48 S 2984322 Candidatus Kirkpatrickella diaphorinae 0.01 44 0 G 91914 Asaia 0.01 44 0 S 91915 Asaia bogorensis 0.01 44 44 S1 1231624 Asaia bogorensis NBRC 16594 0.01 41 0 G 512381 Acidisoma 0.01 41 0 G1 2634065 unclassified Acidisoma 0.01 41 41 S 3040935 Acidisoma sp. PAMC 29798 0.01 40 0 G 2804525 Lichenicola 0.01 40 40 S 1484109 Lichenicola cladoniae 0.01 31 0 G 1519186 Nguyenibacter 0.01 31 31 S 1216886 Nguyenibacter vanlangensis 0.01 26 0 G 50709 Acidocella 0.01 26 0 G1 2648610 unclassified Acidocella 0.01 26 26 S 2697363 Acidocella sp. MX-AZ03 0.01 25 0 G 2811380 Entomobacter 0.01 25 25 S 2762277 Entomobacter blattae 0.00 10 0 G 2870717 Pseudoroseomonas 0.00 10 10 S 204525 Pseudoroseomonas cervicalis 0.00 10 0 G 2791118 Oecophyllibacter 0.00 10 10 S 2558360 Oecophyllibacter saccharovorans 0.00 7 7 G 522 Acidiphilium 0.00 6 0 G 1223423 Neokomagataea 0.00 6 6 S 661191 Neokomagataea tanensis 0.00 5 0 G 153497 Kozakia 0.00 5 5 S 153496 Kozakia baliensis 0.00 5 5 G 1706033 Sediminicoccus 0.00 3 0 G 89583 Gluconacetobacter 0.00 3 0 S 33996 Gluconacetobacter diazotrophicus 0.00 3 3 S1 272568 Gluconacetobacter diazotrophicus PA1 5 0.00 1 0 G 2952773 Formicincola 0.00 1 1 S 2558361 Formicincola oecophyllae 0.01 31 0 F 3031144 Dongiaceae 0.01 31 14 G 2705399 Hypericibacter 0.00 17 17 S 2602016 Hypericibacter adhaerens 0.00 21 0 F 2844601 Stellaceae 0.00 21 0 G 93 Stella 0.00 21 21 S 94 Stella humosa 0.00 16 0 F 41295 Rhodospirillaceae 0.00 10 0 G 1231242 Ferrovibrio 0.00 10 10 S 2594003 Ferrovibrio terrae 0.00 4 0 G 13134 Magnetospirillum 0.00 4 4 S 55518 Magnetospirillum gryphiswaldense 0.00 2 0 G 111830 Defluviicoccus 0.00 2 2 S 111831 Defluviicoccus vanus 0.00 16 0 F 2690195 Elioraeaceae 0.00 16 0 G 457933 Elioraea 0.00 16 16 S 2843330 Elioraea tepida 0.00 12 0 F 597359 Kiloniellaceae 0.00 12 0 G 1647175 Aestuariispira 0.00 12 12 S 2775080 Aestuariispira ectoiniformans 0.00 8 2 F 2829815 Azospirillaceae 0.00 5 5 G 204447 Skermanella 0.00 1 0 G 191 Azospirillum 0.00 1 1 S 1064539 Azospirillum baldaniorum 0.00 1 0 F 2844864 Thalassobaculaceae 0.00 1 0 G 526215 Thalassobaculum 0.00 1 0 G1 2632499 unclassified Thalassobaculum 0.00 1 1 S 3100173 Thalassobaculum sp. OXR-137 0.00 1 0 F 3031145 Novispirillaceae 0.00 1 0 G 1804663 Haematospirillum 0.00 1 1 S 1549855 Haematospirillum jordaniae 0.17 812 3 O 766 Rickettsiales 0.17 780 4 F 942 Anaplasmataceae 0.17 775 0 F1 952 Wolbachieae 0.17 775 0 G 953 Wolbachia 0.17 775 0 G1 2640676 unclassified Wolbachia 0.16 761 761 S 375919 Wolbachia endosymbiont of Drosophila pseudotakahashii 0.00 9 9 S 3080329 Wolbachia endosymbiont of Drosophila aff. chauvacae BK-2020 0.00 3 3 S 3066201 Wolbachia endosymbiont (group A) of Lasioglossum fulvicorne 0.00 1 1 S 1812111 Wolbachia endosymbiont of Cruorifilaria tuberocauda 0.00 1 1 S 80850 Wolbachia endosymbiont of Litomosoides sigmodontis 0.00 1 1 G 768 Anaplasma 0.00 14 0 F 1328881 Candidatus Midichloriaceae 0.00 14 0 G 411566 Candidatus Midichloria 0.00 14 0 S 234827 Candidatus Midichloria mitochondrii 0.00 14 14 S1 696127 Candidatus Midichloria mitochondrii IricVA 0.00 13 1 F 775 Rickettsiaceae 0.00 12 6 F1 33988 Rickettsieae 0.00 3 0 G 780 Rickettsia 0.00 3 0 G1 114295 unclassified Rickettsia 0.00 1 1 S 1182263 Rickettsia sp. MEAM1 (Bemisia tabaci) 0.00 1 1 S 3066251 Rickettsia endosymbiont of Polydrusus tereticollis 0.00 1 1 S 3066270 Rickettsia endosymbiont of Seladonia tumulorum 0.00 2 0 G 2601645 Candidatus Sneabacter 0.00 2 2 S 2601646 Candidatus Sneabacter namystus 0.00 1 0 G 69474 Orientia 0.00 1 1 S 784 Orientia tsutsugamushi 0.00 2 0 O1 1699067 unclassified Rickettsiales 0.00 2 2 S 2486578 Rickettsiales endosymbiont of Stachyamoeba lipophora 0.07 311 22 O 356 Hyphomicrobiales 0.02 93 0 F 118882 Brucellaceae 0.02 93 0 F1 2826938 Brucella/Ochrobactrum group 0.02 93 0 G 234 Brucella 0.02 87 87 S 94625 Brucella intermedia 0.00 6 0 S 29459 Brucella melitensis 0.00 6 0 S1 645169 Brucella melitensis bv. 2 0.00 6 6 S2 520465 Brucella melitensis bv. 2 str. 63/9 0.01 61 0 F 82115 Rhizobiaceae 0.01 42 1 F1 227290 Rhizobium/Agrobacterium group 0.01 38 0 G 1612611 Pararhizobium 0.01 38 24 G1 2643050 unclassified Pararhizobium 0.00 11 11 S 3067903 Pararhizobium sp. IMCC21322 0.00 3 3 S 3067904 Pararhizobium sp. IMCC3301 0.00 2 0 G 357 Agrobacterium 0.00 2 0 G1 1183400 Agrobacterium tumefaciens complex 0.00 2 2 S 358 Agrobacterium tumefaciens 0.00 1 0 G 1525371 Neorhizobium 0.00 1 1 S 515361 Neorhizobium petrolearium 0.00 12 0 F1 227292 Sinorhizobium/Ensifer group 0.00 12 0 G 28105 Sinorhizobium 0.00 12 11 S 382 Sinorhizobium meliloti 0.00 1 1 S1 693982 Sinorhizobium meliloti AK83 0.00 6 0 G 34019 Liberibacter 0.00 5 0 S 556287 Candidatus Liberibacter solanacearum 0.00 5 5 S1 658172 Candidatus Liberibacter solanacearum CLso-ZC1 0.00 1 0 S 309868 Candidatus Liberibacter americanus 0.00 1 1 S1 1261131 Candidatus Liberibacter americanus str. Sao Paulo 0.00 1 0 G 2661800 Georhizobium 0.00 1 1 S 2341112 Georhizobium profundi 0.01 42 1 F 2813035 Parvibaculaceae 0.01 40 0 G 2838250 Kaustia 0.01 40 40 S 2593653 Kaustia mangrovi 0.00 1 0 G 256616 Parvibaculum 0.00 1 0 S 256618 Parvibaculum lavamentivorans 0.00 1 1 S1 402881 Parvibaculum lavamentivorans DS-1 0.00 23 1 F 45401 Hyphomicrobiaceae 0.00 22 22 G 81 Hyphomicrobium 0.00 23 0 O1 119042 Hyphomicrobiales incertae sedis 0.00 23 0 G 212791 Enhydrobacter 0.00 23 0 G1 2632691 unclassified Enhydrobacter 0.00 23 23 S 1894999 Enhydrobacter sp. 0.00 18 0 F 41294 Nitrobacteraceae 0.00 12 0 G 1395974 Tardiphaga 0.00 12 12 S 340268 Tardiphaga alba 0.00 3 0 G 374 Bradyrhizobium 0.00 1 1 S 1355477 Bradyrhizobium diazoefficiens 0.00 1 0 G1 2631580 unclassified Bradyrhizobium 0.00 1 1 S 3039155 Bradyrhizobium sp. CB2312 0.00 1 1 S 858423 Bradyrhizobium arachidis 0.00 3 0 G 1649510 Variibacter 0.00 3 3 S 1333996 Variibacter gotjawalensis 0.00 8 0 F 255475 Aurantimonadaceae 0.00 8 0 G 414371 Aureimonas 0.00 8 0 G1 2615206 unclassified Aureimonas 0.00 8 8 S 2826993 Aureimonas sp. SA4125 0.00 6 0 F 2831090 Blastochloridaceae 0.00 6 6 G 59282 Blastochloris 0.00 5 1 F 2831106 Devosiaceae 0.00 4 0 G 46913 Devosia 0.00 2 2 S 3026423 Devosia rhodophyticola 0.00 1 0 G1 196773 unclassified Devosia 0.00 1 1 S 1736675 Devosia sp. A16 0.00 1 1 S 2917991 Devosia lacusdianchii 0.00 4 0 F 335928 Xanthobacteraceae 0.00 3 2 G 556257 Pseudolabrys 0.00 1 1 S 331696 Pseudolabrys taiwanensis 0.00 1 0 G 204476 Labrys 0.00 1 0 G1 2688601 unclassified Labrys (in: a-proteobacteria) 0.00 1 1 S 2789216 Labrys sp. KNU-23 0.00 2 0 F 119045 Methylobacteriaceae 0.00 1 0 G 407 Methylobacterium 0.00 1 0 S 31998 Methylobacterium radiotolerans 0.00 1 1 S1 426355 Methylobacterium radiotolerans JCM 2831 0.00 1 0 G 186650 Microvirga 0.00 1 1 S 864069 Microvirga lotononidis 0.00 2 0 F 772 Bartonellaceae 0.00 2 0 G 773 Bartonella 0.00 1 0 G1 2645622 unclassified Bartonella 0.00 1 1 S 1933904 Bartonella sp. WD16.2 0.00 1 1 S 2267275 Bartonella krasnovii 0.00 1 0 F 2843308 Pleomorphomonadaceae 0.00 1 0 G 261933 Pleomorphomonas 0.00 1 0 G1 442120 environmental samples 0.00 1 1 S 442121 uncultured Pleomorphomonas sp. 0.00 1 0 F 69277 Phyllobacteriaceae 0.00 1 0 G 68287 Mesorhizobium 0.00 1 1 S 593909 Mesorhizobium opportunistum 0.02 110 0 O 204457 Sphingomonadales 0.02 87 0 F 335929 Erythrobacteraceae 0.02 85 0 G 2800686 Tsuneonella 0.02 85 0 G1 2800703 unclassified Tsuneonella 0.02 85 85 S 3042152 Tsuneonella sp. CC-YZS046 0.00 2 0 G 1295327 Croceicoccus 0.00 2 2 G1 2629967 unclassified Croceicoccus 0.00 12 2 F 41297 Sphingomonadaceae 0.00 3 3 G 165697 Sphingopyxis 0.00 2 2 G 165696 Novosphingobium 0.00 2 0 G 13687 Sphingomonas 0.00 1 1 S 3012344 Sphingomonas abietis 0.00 1 1 S 1541170 Sphingomonas morindae 0.00 2 0 G 1763827 Hankyongella 0.00 2 2 S 1763828 Hankyongella ginsenosidimutans 0.00 1 0 G 2676781 Aquisediminimonas 0.00 1 1 S 1550733 Aquisediminimonas profunda 0.00 11 0 F 2844881 Zymomonadaceae 0.00 11 0 G 541 Zymomonas 0.00 11 11 S 542 Zymomonas mobilis 0.02 102 0 O 204458 Caulobacterales 0.02 102 3 F 76892 Caulobacteraceae 0.01 50 47 G 41275 Brevundimonas 0.00 3 3 S 172043 Brevundimonas nasdae 0.01 44 33 G 76890 Asticcacaulis 0.00 11 0 G1 2628350 unclassified Asticcacaulis 0.00 11 11 S 3157666 Asticcacaulis sp. MM231 0.00 4 0 G 20 Phenylobacterium 0.00 4 4 S 2201350 Phenylobacterium parvum 0.00 1 0 G 75 Caulobacter 0.00 1 0 G1 2648921 unclassified Caulobacter 0.00 1 1 S 3016000 Caulobacter sp. NIBR1757 0.02 94 53 O 204455 Rhodobacterales 0.01 28 4 F 31989 Paracoccaceae 0.00 21 0 G 2816884 Qingshengfaniella 0.00 21 21 S 2599296 Qingshengfaniella alkalisoli 0.00 1 0 G 265 Paracoccus 0.00 1 1 S 2560053 Paracoccus liaowanqingii 0.00 1 0 G 204456 Gemmobacter 0.00 1 1 S 2840474 Gemmobacter fulvus 0.00 1 0 G 285107 Thioclava 0.00 1 0 G1 2621713 unclassified Thioclava 0.00 1 1 S 3131931 Thioclava sp. GXIMD2076 0.00 13 6 F 2854170 Roseobacteraceae 0.00 3 0 G 97050 Ruegeria 0.00 3 0 G1 2625375 unclassified Ruegeria 0.00 3 3 S 2793010 Ruegeria sp. SCSIO 43209 0.00 1 0 G 336277 Roseicyclus 0.00 1 1 S 2161673 Roseicyclus marinus 0.00 1 1 G 74030 Roseovarius 0.00 1 1 G 92944 Ketogulonicigenium 0.00 1 0 G 188905 Jannaschia 0.00 1 0 G1 2645469 unclassified Jannaschia 0.00 1 1 S 3038773 Jannaschia sp. GRR-S6-38 0.01 36 0 O 3108222 Geminicoccales 0.01 36 0 F 2066434 Geminicoccaceae 0.01 36 0 G 171436 Tistrella 0.01 36 0 S 171437 Tistrella mobilis 0.01 36 36 S1 1110502 Tistrella mobilis KA081020-065 0.01 26 0 O 1921002 Holosporales 0.00 16 0 F 1777752 Candidatus Paracaedibacteraceae 0.00 16 0 G 3163645 Candidatus Bodocaedibacter 0.00 16 16 S 2741701 Candidatus Bodocaedibacter vickermanii 0.00 10 3 F 44746 Holosporaceae 0.00 5 0 G 2654634 Candidatus Hydrogenosomobacter 0.00 5 5 S 2558174 Candidatus Hydrogenosomobacter endosymbioticus 0.00 2 0 G 2601651 Candidatus Nesciobacter 0.00 2 2 S 2601668 Candidatus Nesciobacter abundans 0.00 6 0 O 255473 Parvularculales 0.00 6 3 F 255474 Parvularculaceae 0.00 2 0 G 2038635 Hyphococcus 0.00 2 2 S 1866326 Hyphococcus flavus 0.00 1 0 G 208215 Parvularcula 0.00 1 0 G1 2647080 unclassified Parvularcula 0.00 1 1 S 3067902 Parvularcula sp. IMCC14364 0.00 3 3 O 54526 Candidatus Pelagibacterales 0.00 3 0 O 2493627 Minwuiales 0.00 3 0 F 2493628 Minwuiaceae 0.00 3 0 G 2493629 Minwuia 0.00 3 3 G1 2618799 unclassified Minwuia 0.00 3 0 O 2800060 Hyphomonadales 0.00 3 0 F 69657 Hyphomonadaceae 0.00 3 3 G 85 Hyphomonas 0.00 2 0 C1 33807 unclassified Alphaproteobacteria 0.00 2 2 S 3077944 Alphaproteobacteria bacterium endosymbiont of Tiliacea citrago 0.00 2 0 O 2800059 Maricaulales 0.00 2 0 F 2800061 Maricaulaceae 0.00 1 0 G 74317 Maricaulis 0.00 1 1 S 74318 Maricaulis maris 0.00 1 0 G 1649466 Marinicauda 0.00 1 1 S 2029849 Marinicauda algicola 0.00 1 0 O 1191478 Magnetococcales 0.00 1 0 F 1191479 Magnetococcaceae 0.00 1 0 G 162171 Magnetococcus 0.00 1 0 S 1124597 Magnetococcus marinus 0.00 1 1 S1 156889 Magnetococcus marinus MC-1 0.00 1 0 O 2066490 Emcibacterales 0.00 1 0 F 2066491 Emcibacteraceae 0.00 1 0 G 2943291 Pseudemcibacter 0.00 1 1 S 2857064 Pseudemcibacter aquimaris 0.66 3109 294 C 1236 Gammaproteobacteria 0.34 1591 76 O 91347 Enterobacterales 0.23 1083 514 F 543 Enterobacteriaceae 0.03 143 0 G 561 Escherichia 0.03 143 141 S 562 Escherichia coli 0.00 1 1 S1 655817 Escherichia coli ABU 83972 0.00 1 1 S1 2874053 Escherichia coli O25:H1 0.03 139 0 G 590 Salmonella 0.03 139 1 S 28901 Salmonella enterica 0.03 138 4 S1 59201 Salmonella enterica subsp. enterica 0.01 55 55 S2 600 Salmonella enterica subsp. enterica serovar Thompson 0.01 43 43 S2 2579247 Salmonella enterica subsp. enterica serovar Rough O:-:- 0.00 12 0 S2 1242084 Salmonella enterica subsp. enterica serovar Krefeld 0.00 12 12 S3 1242106 Salmonella enterica subsp. enterica serovar Krefeld str. SA20030536 0.00 8 8 S2 108619 Salmonella enterica subsp. enterica serovar Newport 0.00 8 8 S2 2583588 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- 0.00 3 3 S2 29474 Salmonella enterica subsp. enterica serovar California 0.00 2 0 S2 58096 Salmonella enterica subsp. enterica serovar Bareilly 0.00 2 2 S3 1182172 Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000661 0.00 1 1 S2 90370 Salmonella enterica subsp. enterica serovar Typhi 0.00 1 0 S2 611 Salmonella enterica subsp. enterica serovar Heidelberg 0.00 1 1 S3 1124936 Salmonella enterica subsp. enterica serovar Heidelberg str. 41578 0.00 1 1 S2 440524 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- 0.03 118 0 F1 2890311 Klebsiella/Raoultella group 0.02 109 6 G 570 Klebsiella 0.02 90 28 S 573 Klebsiella pneumoniae 0.01 62 21 S1 72407 Klebsiella pneumoniae subsp. pneumoniae 0.01 41 41 S2 1094170 Klebsiella pneumoniae subsp. pneumoniae KPNIH10 0.00 4 4 S 548 Klebsiella aerogenes 0.00 3 3 S 571 Klebsiella oxytoca 0.00 3 1 S 244366 Klebsiella variicola 0.00 2 2 S1 640131 Klebsiella variicola At-22 0.00 2 0 S 1463165 Klebsiella quasipneumoniae 0.00 2 2 S1 1667327 Klebsiella quasipneumoniae subsp. quasipneumoniae 0.00 1 1 S 1134687 Klebsiella michiganensis 0.00 9 0 G 160674 Raoultella 0.00 9 0 G1 2627600 unclassified Raoultella 0.00 9 9 S 2799495 Raoultella sp. XY-1 0.01 60 0 F1 191675 Enterobacteriaceae incertae sedis 0.01 60 2 F2 84563 ant, tsetse, mealybug, aphid, etc. endosymbionts 0.01 51 0 F3 84564 ant endosymbionts 0.01 51 1 G 203804 Candidatus Blochmanniella 0.01 50 47 G1 711328 unclassified Candidatus Blochmanniella 0.00 3 3 S 2681987 Blochmannia endosymbiont of Colobopsis nipponica 0.00 4 0 G 472825 Candidatus Purcelliella 0.00 4 4 S 472834 Candidatus Purcelliella pentastirinorum 0.00 2 0 F3 146507 aphid secondary symbionts 0.00 2 0 G 568988 Candidatus Regiella 0.00 2 0 G1 3077955 unclassified Candidatus Regiella 0.00 2 2 S 3077956 Candidatus Regiella endosymbiont of Tuberolachnus salignus 0.00 1 0 G 1906660 Candidatus Mikella 0.00 1 1 S 1778264 Candidatus Mikella endobia 0.01 59 0 F1 36866 unclassified Enterobacteriaceae 0.01 51 51 S 2675787 Enterobacteriaceae endosymbiont of Donacia tomentosa 0.00 5 5 S 2675780 Enterobacteriaceae endosymbiont of Donacia piscatrix 0.00 2 2 S 2675797 Enterobacteriaceae endosymbiont of Plateumaris sericea 0.00 1 1 S 2675793 Enterobacteriaceae endosymbiont of Plateumaris braccata 0.00 17 0 G 547 Enterobacter 0.00 13 0 G1 354276 Enterobacter cloacae complex 0.00 10 10 S 299767 Enterobacter ludwigii 0.00 1 1 S 61645 Enterobacter asburiae 0.00 1 1 S 158836 Enterobacter hormaechei 0.00 1 1 S 208224 Enterobacter kobei 0.00 4 0 G1 2608935 unclassified Enterobacter 0.00 4 4 S 2870346 Enterobacter sp. C2 0.00 17 0 G 544 Citrobacter 0.00 15 0 G1 1344959 Citrobacter freundii complex 0.00 12 12 S 67827 Citrobacter werkmanii 0.00 2 2 S 1748967 Citrobacter cronae 0.00 1 1 S 1639133 Citrobacter portucalensis 0.00 2 2 S 2971264 Citrobacter enshiensis 0.00 4 4 G 401618 Candidatus Riesia 0.00 3 0 G 1081630 Candidatus Schneideria 0.00 3 3 S 1081631 Candidatus Schneideria nysicola 0.00 2 0 G 1177214 Candidatus Profftia 0.00 2 0 G1 2735709 unclassified Candidatus Profftia 0.00 2 2 S 2864218 Candidatus Profftia sp. (ex Adelges kitamiensis) 0.00 2 0 G 1330547 Kosakonia 0.00 2 2 S 208223 Kosakonia cowanii 0.00 1 0 G 620 Shigella 0.00 1 1 S 623 Shigella flexneri 0.00 1 0 G 2815296 Jejubacter 0.00 1 1 S 2579935 Jejubacter calystegiae 0.00 1 0 G 409304 Candidatus Ishikawella 0.00 1 0 S 168169 Candidatus Ishikawella capsulata 0.00 1 1 S1 476281 Candidatus Ishikawaella capsulata Mpkobe 0.00 1 1 G 447792 Phytobacter 0.00 1 0 G 83654 Leclercia 0.00 1 1 S 83655 Leclercia adecarboxylata 0.06 282 0 F 2812006 Bruguierivoracaceae 0.06 282 0 G 84565 Sodalis 0.06 277 277 S 2697027 Sodalis ligni 0.00 5 0 S 1486991 Candidatus Sodalis pierantonius 0.00 5 5 S1 2342 Candidatus Sodalis pierantonius str. SOPE 0.02 76 14 F 1903414 Morganellaceae 0.01 39 1 G 583 Proteus 0.01 38 38 S 584 Proteus mirabilis 0.00 11 0 G 637 Arsenophonus 0.00 6 6 S 638 Arsenophonus nasoniae 0.00 5 0 G1 2627083 unclassified Arsenophonus 0.00 4 4 S 1231049 Arsenophonus endosymbiont of Aphis craccivora 0.00 1 1 S 634121 Arsenophonus symbiont of Ornithomya chloropus 0.00 9 0 G 581 Morganella 0.00 9 9 S 582 Morganella morganii 0.00 2 0 G 626 Xenorhabdus 0.00 2 0 S 40577 Xenorhabdus poinarii 0.00 2 2 S1 1354304 Xenorhabdus poinarii G6 0.00 1 0 G 586 Providencia 0.00 1 0 G1 2633465 unclassified Providencia 0.00 1 1 S 2949878 Providencia sp. PROV175 0.01 31 0 F 1903410 Pectobacteriaceae 0.00 23 0 G 1082702 Lonsdalea 0.00 22 22 S 1172565 Lonsdalea populi 0.00 1 1 S 1082704 Lonsdalea britannica 0.00 6 0 G 122277 Pectobacterium 0.00 5 5 S 180957 Pectobacterium brasiliense 0.00 1 1 S 1905730 Pectobacterium parmentieri 0.00 1 0 G 71655 Brenneria 0.00 1 1 S 1109412 Brenneria goodwinii 0.00 1 1 G 204037 Dickeya 0.00 23 1 F 1903409 Erwiniaceae 0.00 9 1 G 53335 Pantoea 0.00 5 5 S 59814 Pantoea dispersa 0.00 2 2 S 1235990 Candidatus Pantoea carbekii 0.00 1 1 S 66269 Pantoea stewartii 0.00 5 0 G 32199 Buchnera 0.00 5 3 S 9 Buchnera aphidicola 0.00 1 1 S1 1965431 Buchnera aphidicola (Ceratoglyphina bambusae) 0.00 1 1 S1 1241868 Buchnera aphidicola (Mollitrichosiphum nigrofasciatum) 0.00 3 0 G 551 Erwinia 0.00 3 3 S 1922217 Candidatus Erwinia haradaeae 0.00 3 0 G 2100764 Mixta 0.00 2 2 S 665914 Mixta gaviniae 0.00 1 1 S 665913 Mixta calida 0.00 2 0 G 82986 Tatumella 0.00 2 2 S 82987 Tatumella ptyseos 0.00 20 3 F 1903411 Yersiniaceae 0.00 9 1 G 613 Serratia 0.00 4 4 S 138074 Serratia symbiotica 0.00 3 3 S 61652 Serratia rubidaea 0.00 1 1 G1 2647522 unclassified Serratia (in: enterobacteria) 0.00 7 7 G 1927833 Candidatus Fukatsuia 0.00 1 0 G 629 Yersinia 0.00 1 0 G1 1649845 Yersinia pseudotuberculosis complex 0.00 1 0 S 632 Yersinia pestis 0.00 1 1 S1 1035377 Yersinia pestis A1122 0.10 476 21 O 72274 Pseudomonadales 0.07 316 6 F 135621 Pseudomonadaceae 0.03 157 0 G 1654787 Thiopseudomonas 0.03 157 157 S 1697053 Thiopseudomonas alkaliphila 0.03 152 21 G 286 Pseudomonas 0.02 82 0 G1 136841 Pseudomonas aeruginosa group 0.02 82 82 S 287 Pseudomonas aeruginosa 0.01 35 1 G1 196821 unclassified Pseudomonas 0.01 27 27 S 2762896 Pseudomonas sp. MPDS 0.00 4 4 S 2954088 Pseudomonas sp. FP2262 0.00 1 1 S 2954086 Pseudomonas sp. FP2196 0.00 1 1 S 1500686 Pseudomonas sp. Os17 0.00 1 1 S 2921518 Pseudomonas sp. FSL L8-0168 0.00 4 0 G1 136845 Pseudomonas putida group 0.00 3 3 S 78327 Pseudomonas mosselii 0.00 1 1 S 303 Pseudomonas putida 0.00 3 3 S 437900 Pseudomonas marincola 0.00 1 1 S 2738125 Pseudomonas hefeiensis 0.00 1 1 S 489632 Pseudomonas chengduensis 0.00 1 1 S 244566 Pseudomonas lurida 0.00 1 1 S 2894079 Pseudomonas oryziphila 0.00 1 1 S 198618 Pseudomonas umsongensis 0.00 1 1 S 158627 Pseudomonas graminis 0.00 1 0 G1 136843 Pseudomonas fluorescens group 0.00 1 1 S 47878 Pseudomonas azotoformans 0.00 1 0 G 2901189 Halopseudomonas 0.00 1 1 S 797277 Halopseudomonas litoralis 0.03 139 0 F 2887365 Marinobacteraceae 0.03 139 139 G 2742 Marinobacter 0.03 143 0 O 1706369 Cellvibrionales 0.03 129 0 F 1706371 Cellvibrionaceae 0.03 126 8 G 447467 Simiduia 0.02 113 0 G1 2639280 unclassified Simiduia 0.02 113 113 S 2909669 Simiduia sp. 21SJ11W-1 0.00 5 0 S 447471 Simiduia agarivorans 0.00 5 5 S1 1117647 Simiduia agarivorans SA1 = DSM 21679 0.00 3 0 G 10 Cellvibrio 0.00 3 3 G1 2624793 unclassified Cellvibrio 0.00 7 0 F 1706375 Spongiibacteraceae 0.00 5 0 G 1084558 Oceanicoccus 0.00 5 5 S 716816 Oceanicoccus sagamiensis 0.00 2 0 G 630749 Spongiibacter 0.00 2 2 S 1748242 Spongiibacter taiwanensis 0.00 6 0 F 1706372 Halieaceae 0.00 5 0 G 2847769 Aequoribacter 0.00 5 5 S 2518989 Aequoribacter fuscus 0.00 1 1 G 1217416 Halioglobus 0.00 1 0 F 1706373 Microbulbiferaceae 0.00 1 1 G 48073 Microbulbifer 0.02 110 0 O 135623 Vibrionales 0.02 110 28 F 641 Vibrionaceae 0.02 76 9 G 662 Vibrio 0.01 48 1 G1 2614977 unclassified Vibrio 0.01 30 30 S 2661922 Vibrio sp. THAF191d 0.00 16 16 S 2661921 Vibrio sp. THAF191c 0.00 1 1 S 2819099 Vibrio sp. SCSIO 43155 0.00 14 14 S 666 Vibrio cholerae 0.00 4 0 G1 717610 Vibrio harveyi group 0.00 3 3 S 669 Vibrio harveyi 0.00 1 0 S 670 Vibrio parahaemolyticus 0.00 1 1 S1 745023 Vibrio parahaemolyticus 10329 0.00 1 0 G1 87806 environmental samples 0.00 1 1 S 114054 uncultured Vibrio sp. 0.00 5 0 G 657 Photobacterium 0.00 4 0 S 38293 Photobacterium damselae 0.00 4 4 S1 85581 Photobacterium damselae subsp. damselae 0.00 1 0 S 553611 Photobacterium leiognathi 0.00 1 1 S1 48408 Photobacterium leiognathi subsp. mandapamensis 0.00 1 0 G 246861 Grimontia 0.00 1 1 S 2872157 Grimontia kaedaensis 0.02 96 0 O 135619 Oceanospirillales 0.01 59 8 F 28256 Halomonadaceae 0.01 47 0 F1 114403 Zymobacter group 0.01 41 0 G 33073 Zymobacter 0.01 41 41 S 33074 Zymobacter palmae 0.00 6 0 G 235572 Candidatus Portiera 0.00 6 6 S 91844 Candidatus Portiera aleyrodidarum 0.00 1 0 G 2745 Halomonas 0.00 1 1 S 2733488 Halomonas sulfidivorans 0.00 1 0 G 42054 Chromohalobacter 0.00 1 0 S 158080 Chromohalobacter salexigens 0.00 1 1 S1 290398 Chromohalobacter salexigens DSM 3043 0.00 1 0 G 376488 Halotalea 0.00 1 1 S 376489 Halotalea alkalilenta 0.00 1 1 G 404432 Salinicola 0.00 13 0 F 135620 Oceanospirillaceae 0.00 8 0 G 3018276 Aliamphritea 0.00 8 8 S 1524258 Aliamphritea ceti 0.00 5 0 G 267849 Nitrincola 0.00 5 5 S 2614693 Nitrincola iocasae 0.00 13 0 F 224379 Hahellaceae 0.00 13 13 G 158481 Hahella 0.00 6 0 F 2066474 Endozoicomonadaceae 0.00 6 6 G 305899 Endozoicomonas 0.00 1 0 F 191033 Oleiphilaceae 0.00 1 0 G 141450 Oleiphilus 0.00 1 1 S 141451 Oleiphilus messinensis 0.00 1 0 F 224372 Alcanivoracaceae 0.00 1 1 G 59753 Alcanivorax 0.00 1 0 F 255527 Saccharospirillaceae 0.00 1 0 G 1445504 Gynuella 0.00 1 0 S 1445505 Gynuella sunshinyii 0.00 1 1 S1 1445510 Gynuella sunshinyii YC6258 0.00 1 0 F 449732 Litorivicinaceae 0.00 1 0 G 418700 Litorivicinus 0.00 1 1 S 418701 Litorivicinus lipolyticus 0.00 1 0 F 2823145 Pleioneaceae 0.00 1 0 G 1502941 Pleionea 0.00 1 1 S 3070815 Pleionea litopenaei 0.02 94 0 O 135614 Lysobacterales 0.02 82 3 F 32033 Lysobacteraceae 0.01 39 0 G 338 Xanthomonas 0.01 37 37 S 29447 Xanthomonas albilineans 0.00 1 0 G1 2643310 unclassified Xanthomonas 0.00 1 1 S 2982531 Xanthomonas sp. AM6 0.00 1 0 S 339 Xanthomonas campestris 0.00 1 1 S1 340 Xanthomonas campestris pv. campestris 0.00 22 21 G 68 Lysobacter 0.00 1 1 S 2698682 Lysobacter oculi 0.00 10 10 G 40323 Stenotrophomonas 0.00 5 0 G 2709666 Pseudolysobacter 0.00 5 5 S 2511995 Pseudolysobacter antarcticus 0.00 2 0 G 83614 Luteimonas 0.00 2 0 G1 2629088 unclassified Luteimonas 0.00 1 1 S 1896164 Luteimonas sp. JM171 0.00 1 1 S 2508168 Luteimonas sp. YGD11-2 0.00 1 0 G 83618 Pseudoxanthomonas 0.00 1 1 S 128785 Pseudoxanthomonas mexicana 0.00 12 4 F 1775411 Rhodanobacteraceae 0.00 4 4 G 231454 Dyella 0.00 4 1 G 242605 Luteibacter 0.00 2 2 S 564369 Luteibacter anthropi 0.00 1 1 S 2911539 Luteibacter aegosomatissinici 0.01 70 1 O 135622 Alteromonadales 0.01 58 8 F 72275 Alteromonadaceae 0.01 26 0 G 1751872 Lacimicrobium 0.01 26 26 S 1526571 Lacimicrobium alkaliphilum 0.00 15 0 F1 2903219 Alteromonas/Salinimonas group 0.00 15 0 G 226 Alteromonas 0.00 15 15 S 589873 Alteromonas australica 0.00 5 0 G 2894574 Saccharobesus 0.00 5 5 S 2172099 Saccharobesus litoralis 0.00 2 2 G 1172191 Catenovulum 0.00 1 1 G 1858563 Alkalimarinus 0.00 1 0 G 2905123 Paraneptunicella 0.00 1 1 S 2831148 Paraneptunicella aestuarii 0.00 6 0 F 267890 Shewanellaceae 0.00 5 1 G 22 Shewanella 0.00 2 2 S 712036 Shewanella dokdonensis 0.00 1 1 S 1028752 Shewanella aestuarii 0.00 1 1 S 62322 Shewanella baltica 0.00 1 0 G 2547964 Parashewanella 0.00 1 1 S 2547970 Parashewanella tropica 0.00 3 0 F 267891 Moritellaceae 0.00 3 0 G 58050 Moritella 0.00 3 0 S 90736 Moritella marina 0.00 3 3 S1 1202962 Moritella marina ATCC 15381 0.00 1 0 F 267889 Colwelliaceae 0.00 1 0 G 137583 Thalassomonas 0.00 1 1 S 485447 Thalassomonas actiniarum 0.00 1 0 F 267893 Idiomarinaceae 0.00 1 1 G 135575 Idiomarina 0.01 44 0 O 135613 Chromatiales 0.01 34 4 F 1046 Chromatiaceae 0.00 11 1 G 85072 Allochromatium 0.00 10 10 S 553982 Allochromatium tepidum 0.00 5 0 G 2828366 Caldichromatium 0.00 5 5 S 2699430 Caldichromatium japonicum 0.00 4 0 G 156885 Thioflavicoccus 0.00 4 0 S 80679 Thioflavicoccus mobilis 0.00 4 4 S1 765912 Thioflavicoccus mobilis 8321 0.00 3 3 G 1056 Thiocapsa 0.00 3 0 G 85076 Marichromatium 0.00 3 0 S 37487 Marichromatium purpuratum 0.00 3 3 S1 765910 Marichromatium purpuratum 984 0.00 2 0 G 85073 Thermochromatium 0.00 2 0 S 1050 Thermochromatium tepidum 0.00 2 2 S1 316276 Thermochromatium tepidum ATCC 43061 0.00 1 1 G 61593 Thiorhodovibrio 0.00 1 0 G 67575 Rheinheimera 0.00 1 0 G1 115860 unclassified Rheinheimera 0.00 1 1 S 3019969 Rheinheimera sp. MM224 0.00 6 0 F 2035710 Thioalkalibacteraceae 0.00 6 0 G 2035712 Guyparkeria 0.00 6 6 S 47960 Guyparkeria halophila 0.00 2 0 F 72276 Ectothiorhodospiraceae 0.00 1 0 G 106633 Thioalkalivibrio 0.00 1 0 G1 2621013 unclassified Thioalkalivibrio 0.00 1 1 S 396595 Thioalkalivibrio sp. K90mix 0.00 1 0 G 133193 Alkalilimnicola 0.00 1 0 S 351052 Alkalilimnicola ehrlichii 0.00 1 1 S1 187272 Alkalilimnicola ehrlichii MLHE-1 0.00 2 0 F 3067276 Sedimenticolaceae 0.00 2 0 G 393764 Candidatus Endoriftia 0.00 2 2 S 393765 Candidatus Endoriftia persephone 0.01 38 0 O 135615 Cardiobacteriales 0.01 37 7 F 868 Cardiobacteriaceae 0.00 14 0 G 869 Dichelobacter 0.00 14 14 S 870 Dichelobacter nodosus 0.00 12 0 G 13275 Suttonella 0.00 12 0 G1 2908647 unclassified Suttonella 0.00 12 12 S 2908648 Suttonella sp. R2A3 0.00 4 3 G 2717 Cardiobacterium 0.00 1 0 G1 2648856 unclassified Cardiobacterium 0.00 1 1 S 2866573 Cardiobacterium sp. Marseille-Q4385 0.00 1 0 F 3018589 Ignatzschineriaceae 0.00 1 0 G 582472 Wohlfahrtiimonas 0.00 1 1 S 400946 Wohlfahrtiimonas chitiniclastica 0.01 32 0 O 2887326 Moraxellales 0.01 32 1 F 468 Moraxellaceae 0.00 16 3 G 469 Acinetobacter 0.00 6 0 G1 909768 Acinetobacter calcoaceticus/baumannii complex 0.00 3 3 S 470 Acinetobacter baumannii 0.00 3 3 S 48296 Acinetobacter pittii 0.00 5 0 G1 196816 unclassified Acinetobacter 0.00 4 4 S 3151496 Acinetobacter sp. ANC 7955 0.00 1 1 S 1879049 Acinetobacter sp. WCHAc010034 0.00 2 2 S 202956 Acinetobacter towneri 0.00 14 0 G 475 Moraxella 0.00 14 14 S 90241 Moraxella lincolnii 0.00 1 1 G 497 Psychrobacter 0.01 25 0 O 135618 Methylococcales 0.01 25 0 F 403 Methylococcaceae 0.00 12 0 G 1295378 Methylogaea 0.00 12 12 S 1295382 Methylogaea oryzae 0.00 4 3 G 416 Methylomonas 0.00 1 1 S 3058963 Methylomonas montana 0.00 4 0 G 1808977 Candidatus Methylospira 0.00 4 4 S 1808979 Candidatus Methylospira mobilis 0.00 2 1 G 413 Methylococcus 0.00 1 1 S 414 Methylococcus capsulatus 0.00 2 0 G 762296 Methylovulum 0.00 2 2 S 1704499 Methylovulum psychrotolerans 0.00 1 0 G 1760987 Methylomagnum 0.00 1 1 S 1760988 Methylomagnum ishizawai 0.00 23 2 O 72273 Thiotrichales 0.00 11 0 F 135616 Piscirickettsiaceae 0.00 6 0 G 2039723 Thiomicrorhabdus 0.00 4 4 S 2211106 Thiomicrorhabdus aquaedulcis 0.00 2 2 S 2267253 Thiomicrorhabdus indica 0.00 2 0 G 1237 Piscirickettsia 0.00 2 2 S 1238 Piscirickettsia salmonis 0.00 2 0 G 2781121 Thiosulfatimonas 0.00 2 2 S 2675054 Thiosulfatimonas sediminis 0.00 1 1 G 34067 Cycloclasticus 0.00 10 0 F 135617 Thiotrichaceae 0.00 10 6 G 1030 Thiothrix 0.00 4 4 S 2735563 Thiothrix subterranea 0.00 22 0 O 135624 Aeromonadales 0.00 22 0 F 84642 Aeromonadaceae 0.00 17 13 G 642 Aeromonas 0.00 2 2 S 654 Aeromonas veronii 0.00 1 1 S 652 Aeromonas schubertii 0.00 1 1 S 644 Aeromonas hydrophila 0.00 4 0 G 225143 Oceanisphaera 0.00 4 4 S 1903694 Oceanisphaera avium 0.00 1 0 G 2802288 Dongshaea 0.00 1 1 S 2047966 Dongshaea marina 0.00 15 0 O 1240482 Orbales 0.00 15 1 F 1240483 Orbaceae 0.00 11 0 G 2894762 Zophobihabitans 0.00 11 11 S 1635327 Zophobihabitans entericus 0.00 3 0 G 1335631 Frischella 0.00 3 3 S 1267021 Frischella perrara 0.00 13 2 C1 118884 Gammaproteobacteria incertae sedis 0.00 5 0 G 1076625 Candidatus Steffania 0.00 5 5 S 1076626 Candidatus Steffania adelgidicola 0.00 3 0 G 198346 Candidatus Palibaumannia 0.00 3 3 S 186490 Candidatus Palibaumannia cicadellinicola 0.00 2 0 G 204619 Candidatus Nardonella 0.00 2 2 S 1972134 endosymbiont of Sipalinus gigas 0.00 1 0 C2 32036 sulfur-oxidizing symbionts 0.00 1 1 G 2732587 Candidatus Vesicomyosocius 0.00 10 0 O 135625 Pasteurellales 0.00 10 3 F 712 Pasteurellaceae 0.00 3 0 G 724 Haemophilus 0.00 2 2 S 727 Haemophilus influenzae 0.00 1 1 S 730 [Haemophilus] ducreyi 0.00 2 0 G 75984 Mannheimia 0.00 2 2 S 85404 Mannheimia varigena 0.00 1 0 G 745 Pasteurella 0.00 1 0 S 747 Pasteurella multocida 0.00 1 1 S1 115545 Pasteurella multocida subsp. septica 0.00 1 0 G 214906 Histophilus 0.00 1 1 S 731 Histophilus somni 0.00 4 0 O 3085109 Thiohalobacterales 0.00 4 0 F 3085110 Thiohalobacteraceae 0.00 4 3 G 1273155 Thiohalobacter 0.00 1 0 G1 2631224 unclassified Thiohalobacter 0.00 1 1 S 3057176 Thiohalobacter sp. IOR34 0.00 3 0 O 118969 Legionellales 0.00 3 3 F 118968 Coxiellaceae 0.00 3 0 O 3084968 Thiohalomonadales 0.00 3 0 F 3084969 Thiohalomonadaceae 0.00 3 0 G 2034504 Sulfurivermis 0.00 3 3 S 1972068 Sulfurivermis fontis 0.00 1 0 O 1692040 Acidiferrobacterales 0.00 1 0 F 1692041 Acidiferrobacteraceae 0.00 1 0 G 1744881 Sulfuricaulis 0.00 1 1 S 1620215 Sulfuricaulis limicola 0.00 1 0 O 2887327 Kangiellales 0.00 1 0 F 1920240 Kangiellaceae 0.00 1 1 G 261963 Kangiella 0.00 1 0 O 3060226 Steroidobacterales 0.00 1 0 F 2689614 Steroidobacteraceae 0.00 1 0 G 469322 Steroidobacter 0.00 1 1 S 465721 Steroidobacter denitrificans 0.04 195 29 C 28216 Betaproteobacteria 0.02 107 7 O 80840 Burkholderiales 0.01 44 0 F 80864 Comamonadaceae 0.00 23 0 G 283 Comamonas 0.00 23 23 S 1082851 Comamonas serinivorans 0.00 11 0 G 219181 Ottowia 0.00 11 0 G1 2645081 unclassified Ottowia 0.00 11 11 S 1658672 Ottowia sp. oral taxon 894 0.00 4 0 G 34072 Variovorax 0.00 3 3 S 34073 Variovorax paradoxus 0.00 1 0 G1 663243 unclassified Variovorax 0.00 1 1 S 1795631 Variovorax sp. PAMC 28711 0.00 3 0 G 232523 Hylemonella 0.00 3 3 S 80880 Hylemonella gracilis 0.00 2 2 G 80865 Delftia 0.00 1 1 G 238749 Diaphorobacter 0.01 29 0 F 119060 Burkholderiaceae 0.00 17 0 G 48736 Ralstonia 0.00 16 0 G1 3116862 Ralstonia solanacearum species complex 0.00 16 16 S 305 Ralstonia solanacearum 0.00 1 0 G1 209769 unclassified Ralstonia 0.00 1 1 S 2880990 Ralstonia sp. RS650 0.00 7 0 G 32008 Burkholderia 0.00 7 1 G1 87882 Burkholderia cepacia complex 0.00 4 3 S 152500 Burkholderia dolosa 0.00 1 1 S1 1385930 Burkholderia dolosa PC543 0.00 1 1 S 60552 Burkholderia vietnamiensis 0.00 1 1 S 95486 Burkholderia cenocepacia 0.00 2 0 G 106589 Cupriavidus 0.00 1 1 S 164546 Cupriavidus taiwanensis 0.00 1 1 S 1040979 Cupriavidus neocaledonicus 0.00 1 0 G 44013 Polynucleobacter 0.00 1 1 G1 2640945 unclassified Polynucleobacter 0.00 1 0 G 47670 Lautropia 0.00 1 1 S 47671 Lautropia mirabilis 0.00 1 0 G 1822464 Paraburkholderia 0.00 1 1 S 2571748 Paraburkholderia acidisoli 0.00 12 9 F 995019 Sutterellaceae 0.00 1 0 G 40544 Sutterella 0.00 1 1 S 40545 Sutterella wadsworthensis 0.00 1 0 G 1918598 Turicimonas 0.00 1 1 S 1796652 Turicimonas muris 0.00 1 0 G 1980697 Duodenibacillus 0.00 1 1 S 1852381 Duodenibacillus massiliensis 0.00 6 1 F 75682 Oxalobacteraceae 0.00 2 0 F1 2895353 Telluria group 0.00 2 0 G 149698 Massilia 0.00 2 0 G1 2609279 unclassified Massilia 0.00 2 2 S 1707785 Massilia sp. WG5 0.00 1 1 G 963 Herbaspirillum 0.00 1 0 G 884214 Candidatus Zinderia 0.00 1 0 G1 3077950 unclassified Candidatus Zinderia 0.00 1 1 S 3077951 Candidatus Zinderia endosymbiont of Aphrophora alni 0.00 1 0 G 1344552 Noviherbaspirillum 0.00 1 0 G1 2617509 unclassified Noviherbaspirillum 0.00 1 1 S 2601898 Noviherbaspirillum sp. UKPF54 0.00 4 0 O1 224471 Burkholderiales genera incertae sedis 0.00 4 0 G 32012 Thiomonas 0.00 2 2 S 926 Thiomonas intermedia 0.00 2 0 G1 2625466 unclassified Thiomonas 0.00 2 2 S 1050370 Thiomonas sp. X19 0.00 3 0 F 2975441 Sphaerotilaceae 0.00 2 2 G 93681 Roseateles 0.00 1 0 G 34102 Sphaerotilus 0.00 1 1 S 639200 Sphaerotilus sulfidivorans 0.00 2 0 F 506 Alcaligenaceae 0.00 1 0 G 517 Bordetella 0.00 1 1 S 1416803 Bordetella genomosp. 9 0.00 1 1 G 90243 Oligella 0.01 31 0 O 206351 Neisseriales 0.01 28 12 F 481 Neisseriaceae 0.00 12 0 G 2593687 Aquella 0.00 12 12 S 2067065 Aquella oligotrophica 0.00 3 1 G 482 Neisseria 0.00 2 2 S 485 Neisseria gonorrhoeae 0.00 1 0 G 32257 Kingella 0.00 1 1 S 505 Kingella oralis 0.00 3 1 F 2897177 Chitinibacteraceae 0.00 1 0 G 32014 Iodobacter 0.00 1 1 S 537 Iodobacter fluviatilis 0.00 1 0 G 240411 Chitinimonas 0.00 1 1 S 356302 Chitinimonas koreensis 0.00 18 0 O 32003 Nitrosomonadales 0.00 11 0 F 206379 Nitrosomonadaceae 0.00 11 11 G 914 Nitrosomonas 0.00 3 3 F 32011 Methylophilaceae 0.00 2 0 F 2008793 Sterolibacteriaceae 0.00 1 0 G 1914449 Rugosibacter 0.00 1 1 S 1565605 Rugosibacter aromaticivorans 0.00 1 0 G 3050898 Sulfuricystis 0.00 1 1 S 2211108 Sulfuricystis multivorans 0.00 1 0 F 90627 Gallionellaceae 0.00 1 0 G 2249462 Ferrigenium 0.00 1 1 S 1682490 Ferrigenium kumadai 0.00 1 0 F 2008790 Thiobacillaceae 0.00 1 0 G 1938335 Sulfuritortus 0.00 1 1 S 1914471 Sulfuritortus calidifontis 0.00 7 0 O 1442155 Ferrovales 0.00 7 0 F 1442156 Ferrovaceae 0.00 7 0 G 416212 Ferrovum 0.00 7 7 S 416213 Ferrovum myxofaciens 0.00 2 0 O 206389 Rhodocyclales 0.00 2 0 F 75787 Rhodocyclaceae 0.00 2 0 G 1769726 Niveibacterium 0.00 2 2 S 2811415 Niveibacterium microcysteis 0.00 1 0 C1 119066 Betaproteobacteria incertae sedis 0.00 1 0 G 33055 Candidatus Kinetoplastibacterium 0.00 1 1 S 1576550 Candidatus Kinetoplastibacterium sorsogonicusi 0.00 1 0 C 580370 Zetaproteobacteria 0.00 1 0 O 580371 Mariprofundales 0.00 1 0 F 580372 Mariprofundaceae 0.00 1 1 G 377315 Mariprofundus 0.04 188 0 D1 1783270 FCB group 0.04 188 0 D2 68336 Bacteroidota/Chlorobiota group 0.04 188 0 P 976 Bacteroidota 0.02 92 0 C 768503 Cytophagia 0.02 92 4 O 768507 Cytophagales 0.01 47 0 F 3141701 Flectobacillaceae 0.01 47 47 G 2676247 Aquirufa 0.01 31 0 F 89373 Cytophagaceae 0.01 31 0 G 107 Spirosoma 0.01 30 30 S 2666025 Spirosoma endbachense 0.00 1 1 S 1211326 Spirosoma aerolatum 0.00 6 0 F 2896860 Spirosomataceae 0.00 3 0 G 105 Runella 0.00 3 0 G1 2631759 unclassified Runella 0.00 3 3 S 2268026 Runella sp. SP2 0.00 3 0 G 332157 Larkinella 0.00 3 3 S 332158 Larkinella insperata 0.00 1 0 F 1853232 Hymenobacteraceae 0.00 1 1 G 89966 Hymenobacter 0.00 1 0 F 1853234 Persicobacteraceae 0.00 1 0 G 1434007 Fulvitalea 0.00 1 1 S 1182444 Fulvitalea axinellae 0.00 1 0 F 1937968 Bernardetiaceae 0.00 1 1 G 1937972 Bernardetia 0.00 1 0 F 3141702 Leadbetterellaceae 0.00 1 0 G 319458 Leadbetterella 0.00 1 0 S 316068 Leadbetterella byssophila 0.00 1 1 S1 649349 Leadbetterella byssophila DSM 17132 0.02 85 1 C 200643 Bacteroidia 0.02 83 0 O 171549 Bacteroidales 0.02 82 0 F 815 Bacteroidaceae 0.02 81 0 G 816 Bacteroides 0.02 80 80 S 817 Bacteroides fragilis 0.00 1 1 S 28111 Bacteroides eggerthii 0.00 1 0 G 909656 Phocaeicola 0.00 1 1 S 357276 Phocaeicola dorei 0.00 1 1 F 171552 Prevotellaceae 0.00 1 0 O 1970189 Marinilabiliales 0.00 1 0 F 1471398 Prolixibacteraceae 0.00 1 0 G 1471399 Draconibacterium 0.00 1 0 G1 1573822 environmental samples 0.00 1 1 S 1573823 uncultured Draconibacterium sp. 0.00 10 0 C 117743 Flavobacteriia 0.00 10 1 O 200644 Flavobacteriales 0.00 6 0 F 39782 Blattabacteriaceae 0.00 6 0 G 34098 Blattabacterium 0.00 6 6 S 1653831 Blattabacterium cuenoti 0.00 2 0 F 2762318 Weeksellaceae 0.00 2 1 G 59734 Empedobacter 0.00 1 1 S 247 Empedobacter brevis 0.00 1 0 F 49546 Flavobacteriaceae 0.00 1 0 G 252356 Maribacter 0.00 1 0 G1 2615042 unclassified Maribacter 0.00 1 1 S 313603 Maribacter sp. HTCC2170 0.00 1 0 C 1853228 Chitinophagia 0.00 1 0 O 1853229 Chitinophagales 0.00 1 1 F 563835 Chitinophagaceae 0.01 55 0 P 200940 Thermodesulfobacteriota 0.01 40 0 C 3031651 Desulfuromonadia 0.01 30 0 O 3031668 Geobacterales 0.01 30 2 F 213422 Geobacteraceae 0.01 28 28 G 28231 Geobacter 0.00 10 0 O 69541 Desulfuromonadales 0.00 6 0 F 2812024 Syntrophotaleaceae 0.00 6 0 G 2812025 Syntrophotalea 0.00 6 6 S 1842532 Syntrophotalea acetylenivorans 0.00 4 0 F 213421 Desulfuromonadaceae 0.00 4 0 G 890 Desulfuromonas 0.00 4 0 G1 2614637 unclassified Desulfuromonas 0.00 4 4 S 1566351 Desulfuromonas sp. AOP6 0.00 10 0 C 67799 Thermodesulfobacteria 0.00 10 5 O 188710 Thermodesulfobacteriales 0.00 5 4 F 188711 Thermodesulfobacteriaceae 0.00 1 0 G 2033601 Thermosulfuriphilus 0.00 1 1 S 1936021 Thermosulfuriphilus ammonigenes 0.00 4 0 C 3024418 Desulfobacteria 0.00 4 0 O 213118 Desulfobacterales 0.00 4 0 F 213119 Desulfobacteraceae 0.00 4 4 G 2289 Desulfobacter 0.00 1 0 C 3031646 Desulfarculia 0.00 1 0 O 453227 Desulfarculales 0.00 1 0 F 453228 Desulfarculaceae 0.00 1 0 G 453229 Desulfarculus 0.00 1 0 S 453230 Desulfarculus baarsii 0.00 1 1 S1 644282 Desulfarculus baarsii DSM 2075 0.01 44 0 P 32066 Fusobacteriota 0.01 44 0 C 203490 Fusobacteriia 0.01 44 0 O 203491 Fusobacteriales 0.01 39 0 F 203492 Fusobacteriaceae 0.01 39 36 G 848 Fusobacterium 0.00 2 2 S 851 Fusobacterium nucleatum 0.00 1 0 S 155615 Fusobacterium vincentii 0.00 1 1 S1 1307427 Fusobacterium vincentii ChDC F8 0.00 5 3 F 1129771 Leptotrichiaceae 0.00 1 0 G 32067 Leptotrichia 0.00 1 0 G1 2633022 unclassified Leptotrichia 0.00 1 1 S 1785996 Leptotrichia sp. oral taxon 847 0.00 1 0 G 168808 Sneathia 0.00 1 1 S 187101 Sneathia vaginalis 0.01 36 0 D1 1783257 PVC group 0.00 14 0 P 256845 Lentisphaerota 0.00 14 0 C 1313211 Lentisphaeria 0.00 14 0 O 278081 Lentisphaerales 0.00 14 0 F 566277 Lentisphaeraceae 0.00 14 0 G 256846 Lentisphaera 0.00 14 14 S 1658616 Lentisphaera profundi 0.00 10 0 P 74201 Verrucomicrobiota 0.00 5 0 C 203494 Verrucomicrobiia 0.00 5 0 O 48461 Verrucomicrobiales 0.00 5 5 F 203557 Verrucomicrobiaceae 0.00 3 0 C 134549 Spartobacteria 0.00 3 0 G 134550 Candidatus Xiphinematobacter 0.00 3 0 G1 2648876 unclassified Candidatus Xiphinematobacter 0.00 3 3 S 1704307 Candidatus Xiphinematobacter sp. Idaho Grape 0.00 2 0 C 414999 Opitutia 0.00 2 0 O 415001 Puniceicoccales 0.00 2 2 F 3056374 Cerasicoccaceae 0.00 10 0 P 203682 Planctomycetota 0.00 10 0 C 203683 Planctomycetia 0.00 8 0 O 112 Planctomycetales 0.00 8 6 F 126 Planctomycetaceae 0.00 1 0 G 2795774 Polystyrenella 0.00 1 1 S 2528007 Polystyrenella longa 0.00 1 0 G 2795777 Maioricimonas 0.00 1 1 S 2528026 Maioricimonas rarisocia 0.00 1 0 O 2691354 Pirellulales 0.00 1 0 F 2691357 Pirellulaceae 0.00 1 1 G 2795779 Rosistilla 0.00 1 0 O 2691355 Gemmatales 0.00 1 0 F 1914233 Gemmataceae 0.00 1 0 G 2774146 Frigoriglobus 0.00 1 1 S 2774151 Frigoriglobus tundricola 0.00 2 0 P 204428 Chlamydiota 0.00 2 0 C 204429 Chlamydiia 0.00 2 0 O 1963360 Parachlamydiales 0.00 2 0 F 92712 Simkaniaceae 0.00 2 0 G 1891669 Candidatus Neptunochlamydia 0.00 2 0 G1 3004499 unclassified Candidatus Neptunochlamydia 0.00 2 2 S 3064277 Candidatus Neptunochlamydia sp. REUL1 0.00 22 0 P 508458 Synergistota 0.00 22 0 C 649775 Synergistia 0.00 22 0 O 649776 Synergistales 0.00 20 0 F 3029085 Aminithiophilaceae 0.00 20 0 G 3029078 Aminithiophilus 0.00 20 20 S 3029084 Aminithiophilus ramosus 0.00 1 0 F 649777 Synergistaceae 0.00 1 0 G 81411 Aminomonas 0.00 1 0 S 81412 Aminomonas paucivorans 0.00 1 1 S1 584708 Aminomonas paucivorans DSM 12260 0.00 1 0 F 3029087 Aminobacteriaceae 0.00 1 1 G 81466 Aminobacterium 0.00 15 0 P 2138240 Coprothermobacterota 0.00 15 0 C 2138243 Coprothermobacteria 0.00 15 0 O 2138246 Coprothermobacterales 0.00 15 0 F 2138247 Coprothermobacteraceae 0.00 15 0 G 68335 Coprothermobacter 0.00 15 0 S 35786 Coprothermobacter proteolyticus 0.00 15 15 S1 309798 Coprothermobacter proteolyticus DSM 5265 0.00 8 0 D1 68525 delta/epsilon subdivisions 0.00 8 0 C 28221 Deltaproteobacteria 0.00 8 0 O 1779134 Bradymonadales 0.00 8 0 F 1779135 Bradymonadaceae 0.00 8 0 G 2766927 Persicimonas 0.00 8 8 S 2292766 Persicimonas caeni 0.00 6 0 D1 2323 Bacteria incertae sedis 0.00 6 0 D2 1783234 Bacteria candidate phyla 0.00 6 0 D3 1783273 Patescibacteria group 0.00 6 0 D4 1794810 Microgenomates group 0.00 6 0 D5 2715732 Microgenomates group incertae sedis 0.00 6 0 F 2715733 Candidatus Chazhemtobacteraceae 0.00 6 0 G 2715734 Candidatus Chazhemtobacterium 0.00 6 6 S 2715735 Candidatus Chazhemtobacterium aquaticus 0.00 6 0 P 203691 Spirochaetota 0.00 6 0 C 203692 Spirochaetia 0.00 6 0 O 136 Spirochaetales 0.00 3 0 F 137 Spirochaetaceae 0.00 1 0 G 1911556 Sediminispirochaeta 0.00 1 0 S 55206 Sediminispirochaeta smaragdinae 0.00 1 1 S1 573413 Sediminispirochaeta smaragdinae DSM 11293 0.00 1 0 G 2035349 Oceanispirochaeta 0.00 1 1 S 2518645 Oceanispirochaeta crateris 0.00 1 0 G 2792240 Thiospirochaeta 0.00 1 1 S 252967 Thiospirochaeta perfilievii 0.00 2 0 F 1643685 Borreliaceae 0.00 2 0 G 64895 Borreliella 0.00 2 2 S 100177 Borreliella lusitaniae 0.00 1 0 F 2845253 Treponemataceae 0.00 1 0 G 157 Treponema 0.00 1 1 S 409322 Treponema pedis 0.00 3 0 P 29547 Campylobacterota 0.00 3 0 C 3031852 Epsilonproteobacteria 0.00 3 0 O 213849 Campylobacterales 0.00 1 0 F 72294 Campylobacteraceae 0.00 1 0 G 194 Campylobacter 0.00 1 1 S 449520 Campylobacter canadensis 0.00 1 0 F 2771472 Sulfurovaceae 0.00 1 0 G 269260 Nitratifractor 0.00 1 0 S 269261 Nitratifractor salsuginis 0.00 1 1 S1 749222 Nitratifractor salsuginis DSM 16511 0.00 1 0 F 2932623 Sulfurospirillaceae 0.00 1 0 G 57665 Sulfurospirillum 0.00 1 0 S 66821 Sulfurospirillum multivorans 0.00 1 1 S1 1150621 Sulfurospirillum multivorans DSM 12446 0.00 3 0 P 2818505 Myxococcota 0.00 2 0 C 32015 Myxococcia 0.00 2 0 O 29 Myxococcales 0.00 2 0 O1 80811 Cystobacterineae 0.00 1 1 F 31 Myxococcaceae 0.00 1 0 F 1524213 Vulgatibacteraceae 0.00 1 0 G 1524214 Vulgatibacter 0.00 1 1 S 1391653 Vulgatibacter incomptus 0.00 1 0 P1 3031711 Polyangia 0.00 1 0 O 3031712 Polyangiales 0.00 1 0 F 49 Polyangiaceae 0.00 1 0 G 39643 Sorangium 0.00 1 1 S 56 Sorangium cellulosum 0.00 2 0 P 200783 Aquificota 0.00 2 0 C 187857 Aquificia 0.00 2 0 O 32069 Aquificales 0.00 1 0 F 64898 Aquificaceae 0.00 1 0 G 168657 Hydrogenobaculum 0.00 1 0 G1 2622382 unclassified Hydrogenobaculum 0.00 1 1 S 380749 Hydrogenobaculum sp. Y04AAS1 0.00 1 1 F 224027 Hydrogenothermaceae 0.00 1 0 P 200930 Deferribacterota 0.00 1 0 C 68337 Deferribacteres 0.00 1 0 O 191393 Deferribacterales 0.00 1 0 F 2945021 Calditerrivibrionaceae 0.00 1 0 G 545865 Calditerrivibrio 0.00 1 0 S 477976 Calditerrivibrio nitroreducens 0.00 1 1 S1 768670 Calditerrivibrio nitroreducens DSM 19672 0.00 1 0 P 74152 Elusimicrobiota 0.00 1 0 C 641853 Elusimicrobia 0.00 1 0 O 641854 Elusimicrobiales 0.00 1 0 F 641876 Elusimicrobiaceae 0.00 1 0 G 423604 Elusimicrobium 0.00 1 0 S 423605 Elusimicrobium minutum 0.00 1 1 S1 445932 Elusimicrobium minutum Pei191 0.00 1 0 P 67818 Atribacterota 0.00 1 0 C 2847774 Atribacteria 0.00 1 0 O 2847775 Atribacterales 0.00 1 0 F 2847776 Atribacteraceae 0.00 1 0 G 2847777 Atribacter 0.00 1 1 S 2847778 Atribacter laminatus 0.00 1 0 P 3002442 Thermodesulfobiota 0.00 1 0 C 3002443 Thermodesulfobiia 0.00 1 0 O 3002444 Thermodesulfobiales 0.00 1 0 F 227387 Thermodesulfobiaceae 0.00 1 1 G 227388 Thermodesulfobium 0.00 5 0 D 2157 Archaea 0.00 5 0 P 28890 Euryarchaeota 0.00 5 0 P1 2283794 Methanomada group 0.00 5 0 C 183939 Methanococci 0.00 5 0 O 2182 Methanococcales 0.00 5 0 F 196117 Methanocaldococcaceae 0.00 5 0 G 196118 Methanocaldococcus 0.00 5 0 S 83171 Methanocaldococcus fervens 0.00 5 5 S1 573064 Methanocaldococcus fervens AG86