0.01 8 8 U 0 unclassified 99.99 66895 1 R 1 root 99.88 66821 0 R1 131567 cellular organisms 99.88 66821 63929 D 2 Bacteria 3.42 2286 92 P 1224 Pseudomonadota 3.19 2131 1629 C 1236 Gammaproteobacteria 0.34 228 0 O 72274 Pseudomonadales 0.34 227 0 F 135621 Pseudomonadaceae 0.34 227 1 G 286 Pseudomonas 0.33 218 0 G1 196821 unclassified Pseudomonas 0.33 218 218 S 2892442 Pseudomonas sp. CIP-10 0.01 5 0 G1 136843 Pseudomonas fluorescens group 0.01 5 5 S 298 Pseudomonas marginalis 0.00 2 2 S 2219225 Pseudomonas asiatica 0.00 1 0 G1 136845 Pseudomonas putida group 0.00 1 1 S 78327 Pseudomonas mosselii 0.00 1 0 F 2887365 Marinobacteraceae 0.00 1 0 G 2742 Marinobacter 0.00 1 1 G1 83889 unclassified Marinobacter 0.20 131 0 O 91347 Enterobacterales 0.19 130 1 F 543 Enterobacteriaceae 0.10 67 0 F1 2890311 Klebsiella/Raoultella group 0.10 67 0 G 570 Klebsiella 0.10 65 65 S 573 Klebsiella pneumoniae 0.00 1 1 S 244366 Klebsiella variicola 0.00 1 1 S 2058152 Klebsiella grimontii 0.08 55 0 G 547 Enterobacter 0.08 54 0 G1 2608935 unclassified Enterobacter 0.08 54 54 S 2707174 Enterobacter sp. T2 0.00 1 0 G1 354276 Enterobacter cloacae complex 0.00 1 0 S 158836 Enterobacter hormaechei 0.00 1 1 S1 1296536 Enterobacter hormaechei subsp. xiangfangensis 0.01 4 0 G 590 Salmonella 0.01 4 0 S 28901 Salmonella enterica 0.01 4 0 S1 59201 Salmonella enterica subsp. enterica 0.01 4 4 S2 58712 Salmonella enterica subsp. enterica serovar Anatum 0.00 2 0 G 561 Escherichia 0.00 2 2 S 562 Escherichia coli 0.00 1 1 G 82976 Buttiauxella 0.00 1 0 F 1903411 Yersiniaceae 0.00 1 0 G 629 Yersinia 0.00 1 0 G1 1649845 Yersinia pseudotuberculosis complex 0.00 1 0 S 632 Yersinia pestis 0.00 1 0 S1 385964 Yersinia pestis subsp. pestis 0.00 1 1 S2 1234662 Yersinia pestis subsp. pestis bv. Medievalis 0.18 121 0 O 135614 Lysobacterales 0.18 121 0 F 32033 Lysobacteraceae 0.18 120 0 G 40323 Stenotrophomonas 0.18 120 0 G1 995085 Stenotrophomonas maltophilia group 0.18 120 120 S 40324 Stenotrophomonas maltophilia 0.00 1 0 G 338 Xanthomonas 0.00 1 0 S 53413 Xanthomonas axonopodis 0.00 1 0 S1 1982678 Xanthomonas axonopodis subcluster 9.3 0.00 1 1 S2 325777 Xanthomonas axonopodis pv. vasculorum 0.02 14 0 O 135622 Alteromonadales 0.02 14 0 F 267888 Pseudoalteromonadaceae 0.02 14 0 G 53246 Pseudoalteromonas 0.02 14 0 G1 194690 unclassified Pseudoalteromonas 0.02 14 14 S 649161 Pseudoalteromonas sp. 3J6 0.00 2 0 O 135613 Chromatiales 0.00 2 0 F 2035710 Thioalkalibacteraceae 0.00 2 0 G 2035712 Guyparkeria 0.00 2 2 S 47960 Guyparkeria halophila 0.00 2 0 O 135618 Methylococcales 0.00 2 0 F 403 Methylococcaceae 0.00 2 0 G 429 Methylobacter 0.00 2 0 G1 2635283 unclassified Methylobacter 0.00 2 2 S 2911520 Methylobacter sp. YRD-M1 0.00 1 0 O 1706369 Cellvibrionales 0.00 1 0 F 1706371 Cellvibrionaceae 0.00 1 0 G 10 Cellvibrio 0.00 1 1 G1 2624793 unclassified Cellvibrio 0.00 1 0 O 2887326 Moraxellales 0.00 1 0 F 468 Moraxellaceae 0.00 1 1 G 469 Acinetobacter 0.00 1 0 O 135625 Pasteurellales 0.00 1 0 F 712 Pasteurellaceae 0.00 1 0 G 724 Haemophilus 0.00 1 1 S 730 [Haemophilus] ducreyi 0.00 1 0 O 135619 Oceanospirillales 0.00 1 0 F 28256 Halomonadaceae 0.00 1 0 G 3137766 Vreelandella 0.00 1 1 S 44935 Vreelandella venusta 0.08 54 1 C 28211 Alphaproteobacteria 0.07 49 0 O 356 Hyphomicrobiales 0.06 41 0 F 118882 Brucellaceae 0.06 41 0 F1 2826938 Brucella/Ochrobactrum group 0.06 41 0 G 234 Brucella 0.06 41 0 G1 2632610 unclassified Brucella 0.06 41 41 S 2975050 Brucella sp. 1315 0.01 5 0 F 772 Bartonellaceae 0.01 5 0 G 773 Bartonella 0.01 5 5 S 2267275 Bartonella krasnovii 0.00 3 0 F 335928 Xanthobacteraceae 0.00 3 0 G 279 Xanthobacter 0.00 3 3 S 280 Xanthobacter autotrophicus 0.00 3 0 O 204441 Rhodospirillales 0.00 3 0 F 433 Acetobacteraceae 0.00 2 0 G 1706033 Sediminicoccus 0.00 2 0 G1 3099324 unclassified Sediminicoccus 0.00 2 2 S 3133721 Sediminicoccus sp. KRV36 0.00 1 0 G 1434011 Komagataeibacter 0.00 1 1 S 215221 Komagataeibacter rhaeticus 0.00 1 0 O 204457 Sphingomonadales 0.00 1 0 F 41297 Sphingomonadaceae 0.00 1 0 G 165696 Novosphingobium 0.00 1 1 S 13688 Novosphingobium capsulatum 0.01 9 0 C 28216 Betaproteobacteria 0.01 5 0 O 80840 Burkholderiales 0.01 4 0 F 119060 Burkholderiaceae 0.00 3 0 G 106589 Cupriavidus 0.00 3 3 S 164546 Cupriavidus taiwanensis 0.00 1 0 G 32008 Burkholderia 0.00 1 0 G1 87882 Burkholderia cepacia complex 0.00 1 0 S 152500 Burkholderia dolosa 0.00 1 1 S1 1385930 Burkholderia dolosa PC543 0.00 1 0 F 506 Alcaligenaceae 0.00 1 0 G 222 Achromobacter 0.00 1 1 S 1353889 Achromobacter pestifer 0.00 2 0 O 206351 Neisseriales 0.00 2 0 F 481 Neisseriaceae 0.00 2 0 G 482 Neisseria 0.00 2 2 S 485 Neisseria gonorrhoeae 0.00 1 0 O 32003 Nitrosomonadales 0.00 1 0 F 32011 Methylophilaceae 0.00 1 0 G 1679002 Candidatus Methylopumilus 0.00 1 1 S 1581680 Candidatus Methylopumilus turicensis 0.00 1 0 C1 119066 Betaproteobacteria incertae sedis 0.00 1 0 G 1301080 Candidatus Nasuia 0.00 1 1 S 1160784 Candidatus Nasuia deltocephalinicola 0.67 450 2 D1 1783272 Terrabacteria group 0.60 400 0 P 1239 Bacillota 0.43 286 2 C 91061 Bacilli 0.41 276 1 O 1385 Bacillales 0.37 250 0 F 186817 Bacillaceae 0.37 249 0 G 1386 Bacillus 0.37 248 1 G1 86661 Bacillus cereus group 0.31 207 207 S 1396 Bacillus cereus 0.06 40 40 S 1392 Bacillus anthracis 0.00 1 0 G1 1792192 Bacillus altitudinis complex 0.00 1 1 S 293387 Bacillus altitudinis 0.00 1 1 G 2837504 Heyndrickxia 0.04 24 0 F 90964 Staphylococcaceae 0.04 24 1 G 1279 Staphylococcus 0.02 14 14 S 1280 Staphylococcus aureus 0.01 9 9 S 29382 Staphylococcus cohnii 0.00 1 0 F 186822 Paenibacillaceae 0.00 1 0 G 44249 Paenibacillus 0.00 1 0 G1 185978 unclassified Paenibacillus 0.00 1 1 S 2954679 Paenibacillus sp. FSL K6-2441 0.01 8 0 O 186826 Lactobacillales 0.01 4 0 F 81852 Enterococcaceae 0.00 3 0 G 1350 Enterococcus 0.00 3 3 S 1351 Enterococcus faecalis 0.00 1 0 G 2737 Vagococcus 0.00 1 1 S 2738 Vagococcus fluvialis 0.00 3 0 F 33958 Lactobacillaceae 0.00 2 0 G 2759736 Lacticaseibacillus 0.00 2 2 S 57037 Lacticaseibacillus zeae 0.00 1 0 G 2767889 Loigolactobacillus 0.00 1 1 S 375175 Loigolactobacillus backii 0.00 1 0 F 1300 Streptococcaceae 0.00 1 0 G 1301 Streptococcus 0.00 1 0 S 1308 Streptococcus thermophilus 0.00 1 1 S1 767463 Streptococcus thermophilus ND03 0.16 108 4 C 186801 Clostridia 0.08 55 0 O 3082720 Peptostreptococcales 0.08 55 0 F 186804 Peptostreptococcaceae 0.08 55 0 G 1849822 Paraclostridium 0.08 55 55 S 1505 Paraclostridium sordellii 0.05 36 1 O 186802 Eubacteriales 0.04 27 1 F 31979 Clostridiaceae 0.04 26 1 G 1485 Clostridium 0.04 24 24 S 1491 Clostridium botulinum 0.00 1 1 S 1502 Clostridium perfringens 0.01 8 0 F 216572 Oscillospiraceae 0.01 6 6 G 216851 Faecalibacterium 0.00 1 1 G 2892396 Vescimonas 0.00 1 0 G 2842531 Solibaculum 0.00 1 1 S 2780922 Solibaculum mannosilyticum 0.02 13 0 O 3085636 Lachnospirales 0.02 13 0 F 186803 Lachnospiraceae 0.01 4 3 G 572511 Blautia 0.00 1 0 S 53443 Blautia hydrogenotrophica 0.00 1 1 S1 476272 Blautia hydrogenotrophica DSM 10507 0.00 3 0 G 2316020 Mediterraneibacter 0.00 3 3 S 33038 Mediterraneibacter gnavus 0.00 2 0 G 207244 Anaerostipes 0.00 2 2 S 649756 Anaerostipes hadrus 0.00 1 0 G 28050 Lachnospira 0.00 1 1 S 39485 Lachnospira eligens 0.00 1 0 G 46205 Pseudobutyrivibrio 0.00 1 1 S 185007 Pseudobutyrivibrio xylanivorans 0.00 1 0 G 2569097 Anaerobutyricum 0.00 1 1 S 39488 Anaerobutyricum hallii 0.00 1 1 G 2719313 Enterocloster 0.00 3 0 C 909932 Negativicutes 0.00 2 0 O 1843489 Veillonellales 0.00 2 0 F 31977 Veillonellaceae 0.00 1 0 G 29465 Veillonella 0.00 1 1 S 423477 Veillonella rogosae 0.00 1 0 G 39948 Dialister 0.00 1 1 S 487173 Dialister succinatiphilus 0.00 1 0 O 1843488 Acidaminococcales 0.00 1 1 F 909930 Acidaminococcaceae 0.00 2 0 C 1737404 Tissierellia 0.00 1 0 O 1737405 Tissierellales 0.00 1 0 F 1570339 Peptoniphilaceae 0.00 1 0 G 31983 Helcococcus 0.00 1 1 S 40091 Helcococcus kunzii 0.00 1 0 C1 1737407 Tissierellia incertae sedis 0.00 1 0 G 1582879 Ezakiella 0.00 1 1 S 1852374 Ezakiella massiliensis 0.00 1 0 C 526524 Erysipelotrichia 0.00 1 0 O 526525 Erysipelotrichales 0.00 1 0 F 2810280 Coprobacillaceae 0.00 1 0 G 2678885 Faecalibacillus 0.00 1 1 S 1982626 Faecalibacillus intestinalis 0.06 42 0 P 201174 Actinomycetota 0.06 40 0 C 1760 Actinomycetes 0.04 26 0 O 85011 Kitasatosporales 0.04 26 0 F 2062 Streptomycetaceae 0.04 26 3 G 1883 Streptomyces 0.02 16 0 G1 2593676 unclassified Streptomyces 0.02 13 13 S 2099583 Streptomyces sp. ICC1 0.00 2 2 S 2099584 Streptomyces sp. ICC4 0.00 1 1 S 2933779 Streptomyces sp. WAC00303 0.01 4 0 G1 2867164 Streptomyces rochei group 0.01 4 4 S 67376 Streptomyces vinaceusdrappus 0.00 2 2 S 436397 Streptomyces sudanensis 0.00 1 1 S 83656 Streptomyces tsukubensis 0.01 7 0 O 85007 Mycobacteriales 0.01 4 0 F 85025 Nocardiaceae 0.00 3 0 G 2979332 Prescottella 0.00 3 3 S 43767 Prescottella equi 0.00 1 0 G 1827 Rhodococcus 0.00 1 0 S 37919 Rhodococcus opacus 0.00 1 1 S1 632772 Rhodococcus opacus B4 0.00 2 0 F 85028 Tsukamurellaceae 0.00 2 0 G 2060 Tsukamurella 0.00 2 2 S 2061 Tsukamurella paurometabola 0.00 1 0 F 1762 Mycobacteriaceae 0.00 1 0 G 1866885 Mycolicibacterium 0.00 1 1 S 39687 Mycolicibacterium austroafricanum 0.01 4 0 O 85004 Bifidobacteriales 0.01 4 0 F 31953 Bifidobacteriaceae 0.01 4 2 G 1678 Bifidobacterium 0.00 1 1 S 216816 Bifidobacterium longum 0.00 1 0 S 28025 Bifidobacterium animalis 0.00 1 0 S1 302911 Bifidobacterium animalis subsp. lactis 0.00 1 1 S2 1316911 Bifidobacterium animalis subsp. lactis KLDS2.0603 0.00 2 0 O 85006 Micrococcales 0.00 2 0 F 1268 Micrococcaceae 0.00 1 0 G 1663 Arthrobacter 0.00 1 0 G1 235627 unclassified Arthrobacter 0.00 1 1 S 2651199 Arthrobacter sp. CDRTa11 0.00 1 0 G 1742989 Glutamicibacter 0.00 1 0 G1 2627139 unclassified Glutamicibacter 0.00 1 1 S 1155384 Glutamicibacter sp. ZJUTW 0.00 1 0 O 2037 Actinomycetales 0.00 1 0 F 2049 Actinomycetaceae 0.00 1 0 G 28263 Arcanobacterium 0.00 1 1 S 999183 Arcanobacterium canis 0.00 2 0 C 84998 Coriobacteriia 0.00 2 0 O 1643822 Eggerthellales 0.00 2 0 F 1643826 Eggerthellaceae 0.00 2 0 G 2005386 Arabiibacter 0.00 2 2 S 1870985 Arabiibacter massiliensis 0.01 4 0 P 200795 Chloroflexota 0.01 4 0 C 32061 Chloroflexia 0.00 3 0 O 3139175 Candidatus Chloroheliales 0.00 3 0 F 3139177 Candidatus Chloroheliaceae 0.00 3 0 G 3139173 Candidatus Chlorohelix 0.00 3 3 S 3003348 Candidatus Chlorohelix allophototropha 0.00 1 1 O 32064 Chloroflexales 0.00 1 0 P 544448 Mycoplasmatota 0.00 1 0 C 31969 Mollicutes 0.00 1 0 O 2085 Mycoplasmatales 0.00 1 0 F 2092 Mycoplasmataceae 0.00 1 0 G 2093 Mycoplasma 0.00 1 0 G1 2683645 unclassified Mycoplasma 0.00 1 1 S 2683967 Mycoplasma sp. NEAQ87857 0.00 1 0 D2 1798711 Cyanobacteriota/Melainabacteria group 0.00 1 0 P 1117 Cyanobacteriota 0.00 1 0 C 3028117 Cyanophyceae 0.00 1 0 O 1161 Nostocales 0.00 1 0 F 1892263 Hapalosiphonaceae 0.00 1 0 G 1190 Fischerella 0.00 1 0 G1 494603 unclassified Fischerella 0.00 1 1 S 1752063 Fischerella sp. NIES-3754 0.13 84 0 D1 1783270 FCB group 0.13 84 0 D2 68336 Bacteroidota/Chlorobiota group 0.13 84 2 P 976 Bacteroidota 0.10 68 0 C 200643 Bacteroidia 0.10 67 1 O 171549 Bacteroidales 0.04 29 0 F 171550 Rikenellaceae 0.04 24 0 G 1647173 Acetobacteroides 0.04 24 0 G1 1760810 environmental samples 0.04 24 24 S 1760811 uncultured Acetobacteroides sp. 0.01 5 1 G 239759 Alistipes 0.00 2 2 S 328813 Alistipes onderdonkii 0.00 1 1 S 626932 Alistipes indistinctus 0.00 1 0 G1 2608932 unclassified Alistipes 0.00 1 1 S 2662363 Alistipes sp. dk3624 0.03 20 0 F 815 Bacteroidaceae 0.02 11 2 G 909656 Phocaeicola 0.01 4 4 S 821 Phocaeicola vulgatus 0.01 4 0 S 376805 Phocaeicola salanitronis 0.01 4 4 S1 667015 Phocaeicola salanitronis DSM 18170 0.00 1 1 S 387090 Phocaeicola coprophilus 0.01 9 0 G 816 Bacteroides 0.01 8 8 S 246787 Bacteroides cellulosilyticus 0.00 1 1 S 817 Bacteroides fragilis 0.02 14 2 F 171552 Prevotellaceae 0.01 9 3 G 2974251 Segatella 0.01 6 5 S 165179 Segatella copri 0.00 1 1 S1 537011 Segatella copri DSM 18205 0.00 1 0 G 838 Prevotella 0.00 1 1 S 282402 Prevotella multiformis 0.00 1 0 G 558436 Xylanibacter 0.00 1 1 S 839 Xylanibacter ruminicola 0.00 1 1 G 577309 Paraprevotella 0.00 2 0 F 2005520 Dysgonomonadaceae 0.00 2 0 G 307628 Petrimonas 0.00 2 2 S 1642646 Petrimonas mucosa 0.00 1 0 F 1853231 Odoribacteraceae 0.00 1 1 G 574697 Butyricimonas 0.00 1 0 O 1970189 Marinilabiliales 0.00 1 0 F 1471398 Prolixibacteraceae 0.00 1 0 G 1471399 Draconibacterium 0.00 1 0 G1 1573822 environmental samples 0.00 1 1 S 1573823 uncultured Draconibacterium sp. 0.02 13 0 C 117743 Flavobacteriia 0.02 13 0 O 200644 Flavobacteriales 0.02 12 0 F 2762318 Weeksellaceae 0.02 12 12 G 308865 Elizabethkingia 0.00 1 0 F 49546 Flavobacteriaceae 0.00 1 0 G 237 Flavobacterium 0.00 1 1 S 996 Flavobacterium columnare 0.00 1 0 C 768503 Cytophagia 0.00 1 0 O 768507 Cytophagales 0.00 1 1 F 563798 Cyclobacteriaceae 0.05 35 0 P 29547 Campylobacterota 0.05 35 0 C 3031852 Epsilonproteobacteria 0.05 35 35 O 213849 Campylobacterales 0.04 26 0 P 203691 Spirochaetota 0.04 26 0 C 203692 Spirochaetia 0.04 25 0 O 136 Spirochaetales 0.04 24 0 F 1643685 Borreliaceae 0.03 21 0 G 64895 Borreliella 0.03 21 21 S 29519 Borreliella garinii 0.00 3 0 G 138 Borrelia 0.00 3 0 G1 2649934 unclassified Borrelia 0.00 3 3 S 3058374 Borrelia sp. P9F1 0.00 1 0 F 2845253 Treponemataceae 0.00 1 0 G 157 Treponema 0.00 1 1 S 158 Treponema denticola 0.00 1 0 O 1643688 Leptospirales 0.00 1 0 F 170 Leptospiraceae 0.00 1 0 G 171 Leptospira 0.00 1 1 S 28183 Leptospira santarosai 0.01 9 0 P 32066 Fusobacteriota 0.01 9 0 C 203490 Fusobacteriia 0.01 9 0 O 203491 Fusobacteriales 0.01 8 0 F 203492 Fusobacteriaceae 0.01 8 8 G 848 Fusobacterium 0.00 1 0 F 1129771 Leptotrichiaceae 0.00 1 0 G 168808 Sneathia 0.00 1 1 S 187101 Sneathia vaginalis 0.00 1 0 P 2818505 Myxococcota 0.00 1 0 C 32015 Myxococcia 0.00 1 0 O 29 Myxococcales 0.00 1 0 O1 80811 Cystobacterineae 0.00 1 0 F 31 Myxococcaceae 0.00 1 0 G 224458 Pyxidicoccus 0.00 1 1 S 2813578 Pyxidicoccus parkwaysis 0.00 1 0 D1 1783257 PVC group 0.00 1 1 P 203682 Planctomycetota 0.11 73 0 D 10239 Viruses 0.11 72 0 D1 2559587 Riboviria 0.11 72 0 K 2732396 Orthornavirae 0.11 72 0 P 2732408 Pisuviricota 0.11 72 0 C 2732506 Pisoniviricetes 0.11 72 0 O 76804 Nidovirales 0.11 72 0 O1 2499399 Cornidovirineae 0.11 72 0 F 11118 Coronaviridae 0.11 72 0 F1 2501931 Orthocoronavirinae 0.11 72 0 G 694002 Betacoronavirus 0.11 72 0 G1 2509511 Sarbecovirus 0.11 72 0 S 694009 Severe acute respiratory syndrome-related coronavirus 0.11 72 0 S1 2901879 Severe acute respiratory syndrome coronavirus 0.11 72 72 S2 227984 SARS coronavirus Tor2 0.00 1 0 D1 2731342 Monodnaviria 0.00 1 0 K 2732091 Sangervirae 0.00 1 0 P 2732412 Phixviricota 0.00 1 0 C 2732413 Malgrandaviricetes 0.00 1 0 O 2732414 Petitvirales 0.00 1 0 F 10841 Microviridae 0.00 1 1 F1 1910950 Bullavirinae