2.34 79 79 U 0 unclassified 97.66 3303 0 R 1 root 97.63 3302 0 R1 131567 cellular organisms 97.63 3302 237 D 2 Bacteria 57.10 1931 26 P 1224 Pseudomonadota 38.05 1287 79 C 1236 Gammaproteobacteria 21.50 727 0 O 135614 Lysobacterales 21.50 727 0 F 32033 Lysobacteraceae 21.41 724 0 G 338 Xanthomonas 21.41 724 724 S 29447 Xanthomonas albilineans 0.06 2 1 G 40323 Stenotrophomonas 0.03 1 0 G1 995085 Stenotrophomonas maltophilia group 0.03 1 0 G2 2961925 unclassified Stenotrophomonas maltophilia group 0.03 1 1 S 2072414 Stenotrophomonas sp. ESTM1D_MKCIP4_1 0.03 1 1 G 83618 Pseudoxanthomonas 8.90 301 27 O 91347 Enterobacterales 5.97 202 31 F 543 Enterobacteriaceae 2.07 70 0 G 561 Escherichia 2.04 69 56 S 562 Escherichia coli 0.24 8 8 S1 1322345 Escherichia coli ATCC 25922 0.06 2 2 S1 331112 Escherichia coli HS 0.03 1 1 S1 1446600 Escherichia coli O15:H18 0.03 1 1 S1 2079157 Escherichia coli O2:H1 0.03 1 1 S1 2874053 Escherichia coli O25:H1 0.03 1 1 S 208962 Escherichia albertii 1.36 46 0 F1 2890311 Klebsiella/Raoultella group 1.36 46 5 G 570 Klebsiella 0.77 26 24 S 573 Klebsiella pneumoniae 0.06 2 2 S1 72407 Klebsiella pneumoniae subsp. pneumoniae 0.35 12 12 S 548 Klebsiella aerogenes 0.09 3 2 S 1463165 Klebsiella quasipneumoniae 0.03 1 1 S1 1667327 Klebsiella quasipneumoniae subsp. quasipneumoniae 0.71 24 1 G 590 Salmonella 0.68 23 1 S 28901 Salmonella enterica 0.65 22 1 S1 59201 Salmonella enterica subsp. enterica 0.21 7 7 S2 600 Salmonella enterica subsp. enterica serovar Thompson 0.18 6 6 S2 2579247 Salmonella enterica subsp. enterica serovar Rough O:-:- 0.09 3 3 S2 90105 Salmonella enterica subsp. enterica serovar Saintpaul 0.03 1 1 S2 149539 Salmonella enterica subsp. enterica serovar Enteritidis 0.03 1 1 S2 2583588 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- 0.03 1 1 S2 28147 Salmonella enterica subsp. enterica serovar Oranienburg 0.03 1 1 S2 192955 Salmonella enterica subsp. enterica serovar Kentucky 0.03 1 0 S2 58096 Salmonella enterica subsp. enterica serovar Bareilly 0.03 1 1 S3 1182177 Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000752 0.38 13 0 G 547 Enterobacter 0.38 13 0 G1 354276 Enterobacter cloacae complex 0.30 10 10 S 299767 Enterobacter ludwigii 0.09 3 3 S 158836 Enterobacter hormaechei 0.15 5 0 F1 191675 Enterobacteriaceae incertae sedis 0.15 5 0 F2 84563 ant, tsetse, mealybug, aphid, etc. endosymbionts 0.09 3 0 F3 84564 ant endosymbionts 0.09 3 1 G 203804 Candidatus Blochmanniella 0.06 2 1 G1 711328 unclassified Candidatus Blochmanniella 0.03 1 1 S 2681987 Blochmannia endosymbiont of Colobopsis nipponica 0.03 1 0 F3 146507 aphid secondary symbionts 0.03 1 0 G 568988 Candidatus Regiella 0.03 1 0 G1 3077955 unclassified Candidatus Regiella 0.03 1 1 S 3077956 Candidatus Regiella endosymbiont of Tuberolachnus salignus 0.03 1 1 G 1302410 Candidatus Annandia 0.12 4 0 F1 36866 unclassified Enterobacteriaceae 0.09 3 3 S 2675787 Enterobacteriaceae endosymbiont of Donacia tomentosa 0.03 1 1 S 2675793 Enterobacteriaceae endosymbiont of Plateumaris braccata 0.12 4 3 G 1330547 Kosakonia 0.03 1 1 S 208223 Kosakonia cowanii 0.06 2 0 G 2815296 Jejubacter 0.06 2 2 S 2579935 Jejubacter calystegiae 0.03 1 0 G 544 Citrobacter 0.03 1 1 S 67825 Citrobacter rodentium 0.03 1 0 G 1903434 Atlantibacter 0.03 1 1 S 565 Atlantibacter hermannii 0.03 1 0 G 401618 Candidatus Riesia 0.03 1 1 S 401619 Candidatus Riesia pediculicola 1.18 40 0 F 1903409 Erwiniaceae 0.77 26 0 G 551 Erwinia 0.77 26 26 S 1922217 Candidatus Erwinia haradaeae 0.35 12 11 G 53335 Pantoea 0.03 1 1 S 66269 Pantoea stewartii 0.06 2 0 G 32199 Buchnera 0.06 2 1 S 9 Buchnera aphidicola 0.03 1 1 S1 2315800 Buchnera aphidicola (Stegophylla sp.) 0.44 15 1 F 1903414 Morganellaceae 0.24 8 0 G 581 Morganella 0.24 8 8 S 582 Morganella morganii 0.09 3 0 G 637 Arsenophonus 0.06 2 2 S 634113 Candidatus Arsenophonus lipoptenae 0.03 1 1 S 2879119 Arsenophonus apicola 0.06 2 0 G 583 Proteus 0.06 2 2 S 584 Proteus mirabilis 0.03 1 1 G 626 Xenorhabdus 0.24 8 0 F 2812006 Bruguierivoracaceae 0.24 8 0 G 84565 Sodalis 0.24 8 8 S 2697027 Sodalis ligni 0.21 7 0 F 1903411 Yersiniaceae 0.12 4 4 G 1927833 Candidatus Fukatsuia 0.09 3 0 G 613 Serratia 0.09 3 3 S 138074 Serratia symbiotica 0.06 2 0 F 1903410 Pectobacteriaceae 0.03 1 0 G 122277 Pectobacterium 0.03 1 1 S 1905730 Pectobacterium parmentieri 0.03 1 0 G 204037 Dickeya 0.03 1 1 S 1089444 Dickeya solani 0.86 29 1 O 135622 Alteromonadales 0.74 25 0 F 267888 Pseudoalteromonadaceae 0.74 25 0 G 2834759 Flocculibacter 0.74 25 25 S 2744479 Flocculibacter collagenilyticus 0.03 1 0 F 267890 Shewanellaceae 0.03 1 0 G 22 Shewanella 0.03 1 0 G1 196818 unclassified Shewanella 0.03 1 1 S 2590015 Shewanella sp. SNU WT4 0.03 1 0 F 267891 Moritellaceae 0.03 1 0 G 58050 Moritella 0.03 1 0 S 90736 Moritella marina 0.03 1 1 S1 1202962 Moritella marina ATCC 15381 0.03 1 0 F 267892 Ferrimonadaceae 0.03 1 0 G 44011 Ferrimonas 0.03 1 1 S 2724191 Ferrimonas lipolytica 0.80 27 0 O 135623 Vibrionales 0.80 27 0 F 641 Vibrionaceae 0.71 24 12 G 662 Vibrio 0.18 6 6 S 666 Vibrio cholerae 0.15 5 0 G1 2614977 unclassified Vibrio 0.09 3 3 S 2661921 Vibrio sp. THAF191c 0.06 2 2 S 2661922 Vibrio sp. THAF191d 0.03 1 0 S 52443 Vibrio tapetis 0.03 1 1 S1 1671868 Vibrio tapetis subsp. tapetis 0.06 2 2 G 657 Photobacterium 0.03 1 0 G 188143 Enterovibrio 0.03 1 1 S 1927128 Candidatus Enterovibrio luxaltus 0.74 25 0 O 72274 Pseudomonadales 0.74 25 2 F 135621 Pseudomonadaceae 0.65 22 8 G 286 Pseudomonas 0.15 5 0 G1 136841 Pseudomonas aeruginosa group 0.15 5 4 S 287 Pseudomonas aeruginosa 0.03 1 1 S1 381754 Pseudomonas aeruginosa PA7 0.09 3 0 G1 196821 unclassified Pseudomonas 0.03 1 1 S 2954080 Pseudomonas sp. FP1762 0.03 1 1 S 1500686 Pseudomonas sp. Os17 0.03 1 1 S 2762896 Pseudomonas sp. MPDS 0.09 3 0 G1 136845 Pseudomonas putida group 0.06 2 2 S 303 Pseudomonas putida 0.03 1 1 S 78327 Pseudomonas mosselii 0.03 1 1 S 53407 Pseudomonas asplenii 0.03 1 1 S 158627 Pseudomonas graminis 0.03 1 0 G1 136843 Pseudomonas fluorescens group 0.03 1 0 S 47883 Pseudomonas synxantha 0.03 1 1 S1 96901 Pseudomonas synxantha BG33R 0.03 1 0 G 2901189 Halopseudomonas 0.03 1 1 S 797277 Halopseudomonas litoralis 0.65 22 4 O 135619 Oceanospirillales 0.27 9 2 F 28256 Halomonadaceae 0.12 4 0 F1 114403 Zymobacter group 0.12 4 0 G 235572 Candidatus Portiera 0.12 4 4 S 91844 Candidatus Portiera aleyrodidarum 0.09 3 0 G 2745 Halomonas 0.06 2 2 S 3031727 Halomonas piscis 0.03 1 0 G1 2609666 unclassified Halomonas 0.03 1 1 S 2992143 Halomonas sp. BDJS001 0.15 5 0 F 2823145 Pleioneaceae 0.15 5 0 G 1502941 Pleionea 0.15 5 5 S 3070815 Pleionea litopenaei 0.06 2 1 F 135620 Oceanospirillaceae 0.03 1 0 G 267849 Nitrincola 0.03 1 1 S 2614693 Nitrincola iocasae 0.03 1 0 F 255527 Saccharospirillaceae 0.03 1 0 G 231683 Saccharospirillum 0.03 1 1 S 2161747 Saccharospirillum mangrovi 0.03 1 0 F 2066474 Endozoicomonadaceae 0.03 1 1 G 305899 Endozoicomonas 0.41 14 0 O 2887326 Moraxellales 0.41 14 1 F 468 Moraxellaceae 0.35 12 0 G 469 Acinetobacter 0.15 5 0 G1 909768 Acinetobacter calcoaceticus/baumannii complex 0.15 5 5 S 470 Acinetobacter baumannii 0.09 3 3 S 202956 Acinetobacter towneri 0.03 1 1 S 29430 Acinetobacter haemolyticus 0.03 1 1 S 756892 Acinetobacter indicus 0.03 1 0 G1 196816 unclassified Acinetobacter 0.03 1 1 S 3151496 Acinetobacter sp. ANC 7955 0.03 1 1 S 40214 Acinetobacter johnsonii 0.03 1 1 G 475 Moraxella 0.38 13 0 O 135625 Pasteurellales 0.38 13 1 F 712 Pasteurellaceae 0.15 5 0 G 724 Haemophilus 0.06 2 2 S 726 Haemophilus haemolyticus 0.06 2 2 S 729 Haemophilus parainfluenzae 0.03 1 1 S 727 Haemophilus influenzae 0.09 3 3 G 416916 Aggregatibacter 0.06 2 0 G 713 Actinobacillus 0.03 1 0 S 718 Actinobacillus equuli 0.03 1 1 S1 202948 Actinobacillus equuli subsp. haemolyticus 0.03 1 1 S 157339 Actinobacillus arthritidis 0.03 1 0 G 745 Pasteurella 0.03 1 0 S 747 Pasteurella multocida 0.03 1 1 S1 115545 Pasteurella multocida subsp. septica 0.03 1 0 G 75984 Mannheimia 0.03 1 1 S 85402 Mannheimia granulomatis 0.33 11 0 O 72273 Thiotrichales 0.15 5 0 F 2056687 Fastidiosibacteraceae 0.15 5 0 G 2056696 Cysteiniphilum 0.15 5 0 G1 2610889 unclassified Cysteiniphilum 0.15 5 5 S 2975055 Cysteiniphilum sp. QT6929 0.09 3 0 F 135616 Piscirickettsiaceae 0.03 1 0 G 1237 Piscirickettsia 0.03 1 1 S 1238 Piscirickettsia salmonis 0.03 1 1 G 34067 Cycloclasticus 0.03 1 0 G 40222 Methylophaga 0.03 1 1 S 754477 Methylophaga frappieri 0.06 2 0 F 34064 Francisellaceae 0.06 2 2 G 262 Francisella 0.03 1 0 F 135617 Thiotrichaceae 0.03 1 1 G 1030 Thiothrix 0.27 9 0 O 135618 Methylococcales 0.27 9 4 F 403 Methylococcaceae 0.09 3 0 G 39773 Methylomicrobium 0.09 3 0 S 39775 Methylomicrobium album 0.09 3 3 S1 686340 Methylomicrobium album BG8 0.03 1 1 G 416 Methylomonas 0.03 1 0 G 73778 Methylocaldum 0.03 1 1 S 73780 Methylocaldum szegediense 0.18 6 0 O 135615 Cardiobacteriales 0.15 5 0 F 868 Cardiobacteriaceae 0.09 3 0 G 13275 Suttonella 0.09 3 0 G1 2908647 unclassified Suttonella 0.09 3 3 S 2908648 Suttonella sp. R2A3 0.03 1 0 G 869 Dichelobacter 0.03 1 1 S 870 Dichelobacter nodosus 0.03 1 1 G 2717 Cardiobacterium 0.03 1 0 F 3018589 Ignatzschineriaceae 0.03 1 0 G 582472 Wohlfahrtiimonas 0.03 1 1 S 400946 Wohlfahrtiimonas chitiniclastica 0.18 6 0 O 1706369 Cellvibrionales 0.12 4 0 F 1706371 Cellvibrionaceae 0.06 2 0 G 359337 Marinimicrobium 0.06 2 0 G1 2632100 unclassified Marinimicrobium 0.06 2 2 S 3022676 Marinimicrobium sp. C6131 0.03 1 0 G 10 Cellvibrio 0.03 1 1 G1 2624793 unclassified Cellvibrio 0.03 1 1 G 2425 Teredinibacter 0.03 1 1 F 1706372 Halieaceae 0.03 1 0 F 1706375 Spongiibacteraceae 0.03 1 0 G 1084558 Oceanicoccus 0.03 1 1 S 716816 Oceanicoccus sagamiensis 0.18 6 0 O 135613 Chromatiales 0.09 3 0 F 1046 Chromatiaceae 0.06 2 2 G 1056 Thiocapsa 0.03 1 0 G 2828366 Caldichromatium 0.03 1 1 S 2699430 Caldichromatium japonicum 0.06 2 0 F 72276 Ectothiorhodospiraceae 0.03 1 1 G 106633 Thioalkalivibrio 0.03 1 0 G 1335745 Spiribacter 0.03 1 0 G1 2629425 unclassified Spiribacter 0.03 1 1 S 2666185 Spiribacter sp. 2438 0.03 1 0 F 255526 Halothiobacillaceae 0.03 1 1 G 109262 Halothiobacillus 0.12 4 0 O 1240482 Orbales 0.12 4 0 F 1240483 Orbaceae 0.12 4 0 G 2894762 Zophobihabitans 0.12 4 4 S 1635327 Zophobihabitans entericus 0.09 3 0 O 118969 Legionellales 0.09 3 1 F 118968 Coxiellaceae 0.03 1 0 G 776 Coxiella 0.03 1 0 G1 2676648 unclassified Coxiella (in: g-proteobacteria) 0.03 1 1 S 1656159 Coxiella endosymbiont of Dermacentor marginatus 0.03 1 0 G 254245 Aquicella 0.03 1 1 S 254247 Aquicella siphonis 0.09 3 0 O 135624 Aeromonadales 0.06 2 0 F 84642 Aeromonadaceae 0.03 1 0 G 642 Aeromonas 0.03 1 1 S 654 Aeromonas veronii 0.03 1 0 G 2802288 Dongshaea 0.03 1 1 S 2047966 Dongshaea marina 0.03 1 0 F 83763 Succinivibrionaceae 0.03 1 0 G 83770 Succinivibrio 0.03 1 1 S 83771 Succinivibrio dextrinosolvens 0.03 1 0 C1 118884 Gammaproteobacteria incertae sedis 0.03 1 0 G 204619 Candidatus Nardonella 0.03 1 1 S 1972134 endosymbiont of Sipalinus gigas 0.03 1 0 O 1692040 Acidiferrobacterales 0.03 1 0 F 1692041 Acidiferrobacteraceae 0.03 1 0 G 1692042 Sulfurifustis 0.03 1 1 S 1675686 Sulfurifustis variabilis 16.17 547 7 C 28211 Alphaproteobacteria 13.54 458 2 O 204441 Rhodospirillales 13.31 450 0 F 2844601 Stellaceae 13.31 450 0 G 93 Stella 13.31 450 450 S 94 Stella humosa 0.15 5 0 F 433 Acetobacteraceae 0.15 5 0 G 512381 Acidisoma 0.15 5 0 G1 2634065 unclassified Acidisoma 0.15 5 5 S 3040935 Acidisoma sp. PAMC 29798 0.03 1 0 F 41295 Rhodospirillaceae 0.03 1 0 G 111830 Defluviicoccus 0.03 1 1 S 111831 Defluviicoccus vanus 0.95 32 2 O 356 Hyphomicrobiales 0.53 18 9 F 119045 Methylobacteriaceae 0.24 8 7 G 407 Methylobacterium 0.03 1 1 G1 2615210 unclassified Methylobacterium 0.03 1 1 G 186650 Microvirga 0.18 6 0 F 82115 Rhizobiaceae 0.12 4 3 F1 227290 Rhizobium/Agrobacterium group 0.03 1 0 G 357 Agrobacterium 0.03 1 1 S 160699 Agrobacterium larrymoorei 0.03 1 0 F1 227292 Sinorhizobium/Ensifer group 0.03 1 0 G 28105 Sinorhizobium 0.03 1 1 S 110322 Sinorhizobium terangae 0.03 1 1 G 323620 Shinella 0.09 3 0 F 255475 Aurantimonadaceae 0.09 3 2 G 414371 Aureimonas 0.03 1 0 G1 2615206 unclassified Aureimonas 0.03 1 1 S 2816454 Aureimonas sp. OT7 0.03 1 0 F 41294 Nitrobacteraceae 0.03 1 0 G 374 Bradyrhizobium 0.03 1 1 S 1355477 Bradyrhizobium diazoefficiens 0.03 1 0 F 2831100 Boseaceae 0.03 1 0 G 85413 Bosea 0.03 1 1 S 3068632 Bosea beijingensis 0.03 1 0 O1 119042 Hyphomicrobiales incertae sedis 0.03 1 0 G 376743 Candidatus Endowatersipora 0.03 1 0 G1 3077945 unclassified Candidatus Endowatersipora 0.03 1 1 S 3077946 Candidatus Endowatersipora endosymbiont of Watersipora subatra 0.74 25 0 O 204458 Caulobacterales 0.74 25 1 F 76892 Caulobacteraceae 0.68 23 0 G 41275 Brevundimonas 0.68 23 0 G1 2622653 unclassified Brevundimonas 0.68 23 23 S 2560058 Brevundimonas sp. Bb-A 0.03 1 0 G 20 Phenylobacterium 0.03 1 1 S 2201350 Phenylobacterium parvum 0.33 11 1 O 204457 Sphingomonadales 0.24 8 1 F 41297 Sphingomonadaceae 0.12 4 2 G 13687 Sphingomonas 0.06 2 0 G1 196159 unclassified Sphingomonas 0.03 1 1 S 2937787 Sphingomonas sp. SUN039 0.03 1 1 S 3014784 Sphingomonas sp. NIBR02145 0.03 1 0 G 150203 Blastomonas 0.03 1 1 S 1867408 Blastomonas marina 0.03 1 0 G 1227948 Sphingomicrobium 0.03 1 0 G1 2627843 unclassified Sphingomicrobium 0.03 1 1 S 3133972 Sphingomicrobium sp. XHP0239 0.03 1 0 G 1434046 Sphingorhabdus 0.03 1 1 S 1913578 Sphingorhabdus lutea 0.06 2 0 F 335929 Erythrobacteraceae 0.06 2 2 G 2800681 Aurantiacibacter 0.30 10 4 O 204455 Rhodobacterales 0.18 6 1 F 31989 Paracoccaceae 0.03 1 1 G 121820 Roseinatronobacter 0.03 1 0 G 204456 Gemmobacter 0.03 1 1 S 2169400 Gemmobacter aquarius 0.03 1 0 G 265 Paracoccus 0.03 1 0 G1 2688777 unclassified Paracoccus (in: a-proteobacteria) 0.03 1 1 S 3030011 Paracoccus sp. S3-43 0.03 1 0 G 366614 Haematobacter 0.03 1 1 S 195105 Haematobacter massiliensis 0.03 1 0 G 2816884 Qingshengfaniella 0.03 1 1 S 2599296 Qingshengfaniella alkalisoli 0.09 3 0 O 766 Rickettsiales 0.06 2 0 F 942 Anaplasmataceae 0.06 2 0 G 2883098 Candidatus Mesenet 0.06 2 2 G1 3066220 unclassified Candidatus Mesenet 0.03 1 0 F 775 Rickettsiaceae 0.03 1 0 F1 33988 Rickettsieae 0.03 1 0 G 69474 Orientia 0.03 1 1 S 784 Orientia tsutsugamushi 0.03 1 0 O 255473 Parvularculales 0.03 1 0 F 255474 Parvularculaceae 0.03 1 0 G 208215 Parvularcula 0.03 1 0 G1 2647080 unclassified Parvularcula 0.03 1 1 S 3067902 Parvularcula sp. IMCC14364 2.07 70 1 C 28216 Betaproteobacteria 1.33 45 3 O 80840 Burkholderiales 1.01 34 1 F 119060 Burkholderiaceae 0.44 15 0 G 48736 Ralstonia 0.44 15 0 G1 3116862 Ralstonia solanacearum species complex 0.44 15 15 S 305 Ralstonia solanacearum 0.33 11 0 G 47670 Lautropia 0.33 11 11 S 47671 Lautropia mirabilis 0.15 5 0 G 32008 Burkholderia 0.06 2 0 G1 87882 Burkholderia cepacia complex 0.06 2 2 S 152500 Burkholderia dolosa 0.06 2 0 G1 2613784 unclassified Burkholderia 0.06 2 2 S 1494466 Burkholderia sp. FERM BP-3421 0.03 1 0 G1 111527 pseudomallei group 0.03 1 0 S 28450 Burkholderia pseudomallei 0.03 1 1 S1 1249468 Burkholderia pseudomallei NCTC 13178 0.03 1 0 G 44013 Polynucleobacter 0.03 1 1 S 576610 Polynucleobacter necessarius 0.03 1 1 G 1827195 Caballeronia 0.18 6 0 F 75682 Oxalobacteraceae 0.06 2 0 F1 2895353 Telluria group 0.06 2 1 G 149698 Massilia 0.03 1 1 S 1141883 Massilia putida 0.03 1 0 G 303379 Herminiimonas 0.03 1 1 S 1809410 Herminiimonas arsenitoxidans 0.03 1 0 G 401469 Undibacterium 0.03 1 1 G1 2630295 unclassified Undibacterium 0.03 1 0 G 884214 Candidatus Zinderia 0.03 1 0 G1 3077950 unclassified Candidatus Zinderia 0.03 1 1 S 3077951 Candidatus Zinderia endosymbiont of Aphrophora alni 0.03 1 0 G 1344552 Noviherbaspirillum 0.03 1 0 G1 2617509 unclassified Noviherbaspirillum 0.03 1 1 S 2601898 Noviherbaspirillum sp. UKPF54 0.03 1 0 F 506 Alcaligenaceae 0.03 1 1 G 90243 Oligella 0.03 1 1 F 80864 Comamonadaceae 0.59 20 0 O 206351 Neisseriales 0.56 19 7 F 481 Neisseriaceae 0.27 9 2 G 482 Neisseria 0.09 3 3 S 487 Neisseria meningitidis 0.06 2 2 S 495 Neisseria elongata 0.03 1 1 S 485 Neisseria gonorrhoeae 0.03 1 1 S 607712 Neisseria shayeganii 0.06 2 0 G 71 Simonsiella 0.06 2 2 S 72 Simonsiella muelleri 0.03 1 0 G 334107 Conchiformibius 0.03 1 1 S 153493 Conchiformibius steedae 0.03 1 0 F 1499392 Chromobacteriaceae 0.03 1 0 G 57739 Vogesella 0.03 1 0 G1 2684990 unclassified Vogesella 0.03 1 1 S 1192162 Vogesella sp. LIG4 0.06 2 1 O 32003 Nitrosomonadales 0.03 1 0 F 90627 Gallionellaceae 0.03 1 0 G 2249462 Ferrigenium 0.03 1 1 S 1682490 Ferrigenium kumadai 0.06 2 0 C1 119066 Betaproteobacteria incertae sedis 0.03 1 0 G 33055 Candidatus Kinetoplastibacterium 0.03 1 0 S 994692 Candidatus Kinetoplastibacterium desouzaii 0.03 1 1 S1 1208919 Candidatus Kinetoplastibacterium desouzaii TCC079E 0.03 1 0 G 1301080 Candidatus Nasuia 0.03 1 1 S 1160784 Candidatus Nasuia deltocephalinicola 0.03 1 0 C 1807140 Acidithiobacillia 0.03 1 0 O 225057 Acidithiobacillales 0.03 1 0 F 225058 Acidithiobacillaceae 0.03 1 1 G 119977 Acidithiobacillus 28.74 972 78 D1 1783272 Terrabacteria group 18.89 639 18 P 1239 Bacillota 15.70 531 21 C 91061 Bacilli 9.25 313 10 O 186826 Lactobacillales 4.29 145 0 F 81852 Enterococcaceae 4.29 145 4 G 1350 Enterococcus 3.78 128 128 S 1351 Enterococcus faecalis 0.18 6 6 S 1352 Enterococcus faecium 0.18 6 6 S 1354 Enterococcus hirae 0.03 1 1 S 44008 Enterococcus cecorum 2.42 82 8 F 33958 Lactobacillaceae 0.86 29 22 G 46255 Weissella 0.12 4 4 S 1249 Weissella paramesenteroides 0.03 1 1 S 1583 Weissella confusa 0.03 1 1 S 137591 Weissella cibaria 0.03 1 1 S 165096 Weissella koreensis 0.24 8 6 G 1243 Leuconostoc 0.06 2 0 G1 3016637 Leuconostoc gelidum group 0.06 2 0 S 115778 Leuconostoc gasicomitatum 0.06 2 2 S1 762550 Leuconostoc gasicomitatum LMG 18811 0.15 5 1 G 2767887 Ligilactobacillus 0.09 3 3 S 89059 Ligilactobacillus acidipiscis 0.03 1 1 S 1605 Ligilactobacillus animalis 0.15 5 0 G 2767886 Levilactobacillus 0.09 3 3 S 1580 Levilactobacillus brevis 0.06 2 2 S 267363 Levilactobacillus zymae 0.15 5 2 G 2767890 Paucilactobacillus 0.06 2 2 S 1296540 Paucilactobacillus nenjiangensis 0.03 1 1 S 152335 Paucilactobacillus suebicus 0.12 4 0 G 2767842 Lactiplantibacillus 0.09 3 2 S 1590 Lactiplantibacillus plantarum 0.03 1 1 S1 337330 Lactiplantibacillus plantarum subsp. plantarum 0.03 1 1 S 1589 Lactiplantibacillus pentosus 0.09 3 2 G 2767889 Loigolactobacillus 0.03 1 1 S 1610 Loigolactobacillus coryniformis 0.09 3 0 G 2759736 Lacticaseibacillus 0.09 3 3 S 1597 Lacticaseibacillus paracasei 0.06 2 0 G 2742598 Limosilactobacillus 0.03 1 1 S 1598 Limosilactobacillus reuteri 0.03 1 1 S 2742601 Limosilactobacillus portuensis 0.06 2 2 G 2767888 Liquorilactobacillus 0.03 1 0 G 2767874 Acetilactobacillus 0.03 1 1 S 1720083 Acetilactobacillus jinshanensis 0.03 1 0 G 2767893 Lentilactobacillus 0.03 1 1 S 1581 Lentilactobacillus buchneri 0.03 1 1 G 2767877 Apilactobacillus 0.03 1 1 G 2767878 Bombilactobacillus 0.03 1 0 G 2767881 Fructilactobacillus 0.03 1 1 S 1625 Fructilactobacillus sanfranciscensis 0.03 1 0 G 2930384 Periweissella 0.03 1 1 S 2506420 Periweissella cryptocerci 0.03 1 1 G 2767885 Latilactobacillus 0.03 1 0 G 1578 Lactobacillus 0.03 1 1 S 33959 Lactobacillus johnsonii 1.95 66 1 F 1300 Streptococcaceae 1.86 63 15 G 1301 Streptococcus 1.01 34 34 S 1308 Streptococcus thermophilus 0.06 2 1 S 1311 Streptococcus agalactiae 0.03 1 1 S1 1203670 Streptococcus agalactiae GD201008-001 0.06 2 2 S 1314 Streptococcus pyogenes 0.06 2 0 G1 671232 Streptococcus anginosus group 0.06 2 2 S 1328 Streptococcus anginosus 0.03 1 0 G1 119603 Streptococcus dysgalactiae group 0.03 1 0 S 1334 Streptococcus dysgalactiae 0.03 1 1 S1 99822 Streptococcus dysgalactiae subsp. dysgalactiae 0.03 1 1 S 1307 Streptococcus suis 0.03 1 1 S 1811193 Streptococcus pantholopis 0.03 1 1 S 1313 Streptococcus pneumoniae 0.03 1 1 S 2490633 Streptococcus periodonticum 0.03 1 1 S 2173853 Streptococcus chenjunshii 0.03 1 1 S 82348 Streptococcus pluranimalium 0.03 1 1 S 68892 Streptococcus infantis 0.06 2 1 G 1357 Lactococcus 0.03 1 1 S 1151742 Lactococcus taiwanensis 0.21 7 0 F 186827 Aerococcaceae 0.09 3 2 G 1375 Aerococcus 0.03 1 1 S 87541 Aerococcus christensenii 0.06 2 0 G 2862144 Ruoffia 0.06 2 2 S 87458 Ruoffia tabacinasalis 0.03 1 0 G 89092 Ignavigranum 0.03 1 1 S 89093 Ignavigranum ruoffiae 0.03 1 0 G 2761542 Fundicoccus 0.03 1 1 S 2969821 Fundicoccus culcitae 0.09 3 0 F 186828 Carnobacteriaceae 0.09 3 0 G 117563 Granulicatella 0.06 2 2 S 46124 Granulicatella adiacens 0.03 1 1 S 137732 Granulicatella elegans 5.82 197 10 O 1385 Bacillales 2.51 85 4 F 186817 Bacillaceae 1.18 40 3 G 1386 Bacillus 0.74 25 0 G1 653685 Bacillus subtilis group 0.71 24 0 G2 1938374 Bacillus amyloliquefaciens group 0.71 24 24 S 492670 Bacillus velezensis 0.03 1 1 S 1452 Bacillus atrophaeus 0.27 9 0 G1 86661 Bacillus cereus group 0.09 3 2 S 1428 Bacillus thuringiensis 0.03 1 1 S1 180850 Bacillus thuringiensis serovar indiana 0.06 2 1 S 1396 Bacillus cereus 0.03 1 1 S1 572264 Bacillus cereus 03BB102 0.06 2 2 S 1392 Bacillus anthracis 0.03 1 1 S 1405 Bacillus mycoides 0.03 1 1 S 64104 Bacillus pseudomycoides 0.03 1 0 G1 185979 unclassified Bacillus (in: firmicutes) 0.03 1 1 S 3129297 Bacillus sp. FJAT-52991 0.03 1 1 S 561879 Bacillus safensis 0.03 1 1 S 1408 Bacillus pumilus 1.06 36 0 G 84406 Virgibacillus 1.06 36 36 S 447199 Virgibacillus salarius 0.03 1 0 G 2837502 Ectobacillus 0.03 1 0 G1 2837512 unclassified Ectobacillus 0.03 1 1 S 2933872 Ectobacillus sp. JY-23 0.03 1 0 G 2005375 Alkalicoccus 0.03 1 1 S 1667239 Alkalicoccus halolimnae 0.03 1 0 G 175304 Lentibacillus 0.03 1 1 S 1472767 Lentibacillus amyloliquefaciens 0.03 1 1 G 400634 Lysinibacillus 0.03 1 0 G 2893055 Halalkalibacterium (ex Joshi et al. 2022) 0.03 1 0 S 86665 Halalkalibacterium halodurans 0.03 1 1 S1 272558 Halalkalibacterium halodurans C-125 2.01 68 0 F 90964 Staphylococcaceae 1.95 66 4 G 1279 Staphylococcus 1.33 45 45 S 1280 Staphylococcus aureus 0.24 8 8 S 28035 Staphylococcus lugdunensis 0.12 4 4 S 1282 Staphylococcus epidermidis 0.06 2 2 S 1283 Staphylococcus haemolyticus 0.03 1 0 G1 2815305 Staphylococcus intermedius group 0.03 1 1 S 283734 Staphylococcus pseudintermedius 0.03 1 1 S 29378 Staphylococcus arlettae 0.03 1 1 S 2044912 Staphylococcus debuckii 0.06 2 2 G 2803850 Mammaliicoccus 0.27 9 1 F 186818 Planococcaceae 0.12 4 0 G 651660 Paenisporosarcina 0.12 4 4 S 2320858 Paenisporosarcina cavernae 0.06 2 1 G 1569 Sporosarcina 0.03 1 0 G1 2647733 unclassified Sporosarcina 0.03 1 1 S 2921556 Sporosarcina sp. FSL K6-2383 0.03 1 0 G 160795 Ureibacillus 0.03 1 1 S 367743 Ureibacillus thermophilus 0.03 1 0 G 889388 Chryseomicrobium 0.03 1 0 G1 2625558 unclassified Chryseomicrobium 0.03 1 1 S 2921704 Chryseomicrobium sp. FSL W7-1435 0.24 8 0 F 186822 Paenibacillaceae 0.21 7 0 G 44249 Paenibacillus 0.12 4 0 G1 185978 unclassified Paenibacillus 0.03 1 1 S 715179 Paenibacillus sp. sptzw28 0.03 1 1 S 2921654 Paenibacillus sp. FSL R5-0701 0.03 1 1 S 2921709 Paenibacillus sp. FSL W8-0186 0.03 1 1 S 2741301 Paenibacillus sp. URB8-2 0.06 2 1 S 1406 Paenibacillus polymyxa 0.03 1 1 S1 1413214 Paenibacillus polymyxa SQR-21 0.03 1 1 S 539262 Paenibacillus hunanensis 0.03 1 0 G 329857 Cohnella 0.03 1 1 S 2507935 Cohnella abietis 0.21 7 0 F 186820 Listeriaceae 0.15 5 2 G 1637 Listeria 0.03 1 0 S 1638 Listeria ivanovii 0.03 1 0 S1 202751 Listeria ivanovii subsp. ivanovii 0.03 1 1 S2 881621 Listeria ivanovii subsp. ivanovii PAM 55 0.03 1 1 S 1641 Listeria grayi 0.03 1 0 G1 2642072 unclassified Listeria 0.03 1 1 S 1844999 Listeria sp. PSOL-1 0.06 2 0 G 2755 Brochothrix 0.06 2 2 S 2756 Brochothrix thermosphacta 0.15 5 0 F 186823 Alicyclobacillaceae 0.15 5 0 G 29330 Alicyclobacillus 0.15 5 5 S 2931921 Alicyclobacillus mengziensis 0.06 2 0 F 186821 Sporolactobacillaceae 0.06 2 0 G 2077 Sporolactobacillus 0.06 2 2 S 269673 Sporolactobacillus terrae 0.06 2 0 F 539738 Gemellaceae 0.06 2 2 G 1378 Gemella 0.03 1 1 F 186824 Thermoactinomycetaceae 2.10 71 1 C 186801 Clostridia 1.15 39 0 O 53433 Halanaerobiales 1.15 39 0 F 53434 Halobacteroidaceae 1.12 38 0 G 42417 Halobacteroides 1.12 38 0 S 42422 Halobacteroides halobius 1.12 38 38 S1 748449 Halobacteroides halobius DSM 5150 0.03 1 0 G 28186 Acetohalobium 0.03 1 0 S 28187 Acetohalobium arabaticum 0.03 1 1 S1 574087 Acetohalobium arabaticum DSM 5501 0.71 24 2 O 186802 Eubacteriales 0.33 11 11 F 31984 Heliobacteriaceae 0.18 6 0 F 31979 Clostridiaceae 0.15 5 2 G 1485 Clostridium 0.09 3 3 S 1502 Clostridium perfringens 0.03 1 0 G 1434026 Oceanirhabdus 0.03 1 0 G1 2675010 unclassified Oceanirhabdus 0.03 1 1 S 2999116 Oceanirhabdus sp. W0125-5 0.12 4 1 F 216572 Oscillospiraceae 0.06 2 0 G 1263 Ruminococcus 0.03 1 1 S 2564099 Ruminococcus bovis 0.03 1 1 G1 2608920 unclassified Ruminococcus 0.03 1 0 G 459786 Oscillibacter 0.03 1 1 S 2763056 Oscillibacter hominis 0.03 1 0 O1 538999 Eubacteriales incertae sedis 0.03 1 0 G 1392389 Intestinimonas 0.03 1 1 S 1297617 Intestinimonas butyriciproducens 0.12 4 0 O 3085636 Lachnospirales 0.12 4 0 F 186803 Lachnospiraceae 0.03 1 0 G 841 Roseburia 0.03 1 1 S 301301 Roseburia hominis 0.03 1 0 G 2383 Candidatus Epulonipiscium 0.03 1 1 S 420336 Candidatus Epulonipiscium viviparus 0.03 1 0 G 2569097 Anaerobutyricum 0.03 1 1 S 39488 Anaerobutyricum hallii 0.03 1 0 G 1164882 Lachnoanaerobaculum 0.03 1 1 S 2490855 Lachnoanaerobaculum gingivalis 0.09 3 0 O 3082720 Peptostreptococcales 0.06 2 1 F 186804 Peptostreptococcaceae 0.03 1 0 G 1870884 Clostridioides 0.03 1 1 S 1496 Clostridioides difficile 0.03 1 0 F 3030910 Anaerovoracaceae 0.03 1 1 G 86331 Mogibacterium 0.50 17 0 C 909932 Negativicutes 0.30 10 0 O 1843489 Veillonellales 0.30 10 0 F 31977 Veillonellaceae 0.24 8 3 G 29465 Veillonella 0.09 3 3 S 423477 Veillonella rogosae 0.06 2 2 S 29466 Veillonella parvula 0.03 1 0 G 906 Megasphaera 0.03 1 1 S 1675036 Megasphaera hexanoica 0.03 1 0 G 39948 Dialister 0.03 1 1 S 487173 Dialister succinatiphilus 0.21 7 0 O 909929 Selenomonadales 0.21 7 0 F 1843491 Selenomonadaceae 0.21 7 1 G 970 Selenomonas 0.12 4 0 G1 2637378 unclassified Selenomonas 0.06 2 2 S 713030 Selenomonas sp. oral taxon 136 0.03 1 1 S 712538 Selenomonas sp. oral taxon 478 0.03 1 1 S 3095337 Selenomonas sp. TAMA-11512 0.06 2 2 S 69823 Selenomonas sputigena 0.06 2 0 C 1737404 Tissierellia 0.06 2 0 O 1737405 Tissierellales 0.06 2 0 F 1570339 Peptoniphilaceae 0.03 1 0 G 150022 Finegoldia 0.03 1 1 S 1260 Finegoldia magna 0.03 1 1 G 165779 Anaerococcus 3.49 118 0 P 201174 Actinomycetota 3.25 110 4 C 1760 Actinomycetes 1.24 42 1 O 85006 Micrococcales 0.65 22 0 F 2805591 Tropherymataceae 0.65 22 0 G 2038 Tropheryma 0.65 22 22 S 2039 Tropheryma whipplei 0.44 15 0 F 1268 Micrococcaceae 0.30 10 4 G 32207 Rothia 0.09 3 3 S 43675 Rothia mucilaginosa 0.09 3 3 S 172042 Rothia aeria 0.06 2 0 G 1742989 Glutamicibacter 0.03 1 1 S 37929 Glutamicibacter nicotianae 0.03 1 0 G1 2627139 unclassified Glutamicibacter 0.03 1 1 S 1155384 Glutamicibacter sp. ZJUTW 0.03 1 0 G 1663 Arthrobacter 0.03 1 0 G1 235627 unclassified Arthrobacter 0.03 1 1 S 2079227 Arthrobacter sp. PGP41 0.03 1 0 G 1742993 Pseudarthrobacter 0.03 1 0 G1 2647000 unclassified Pseudarthrobacter 0.03 1 1 S 2973976 Pseudarthrobacter sp. NS4 0.03 1 1 G 1160973 Auritidibacter 0.06 2 1 F 85020 Dermabacteraceae 0.03 1 1 G 43668 Brachybacterium 0.06 2 2 F 85023 Microbacteriaceae 0.74 25 4 O 85009 Propionibacteriales 0.56 19 3 F 31957 Propionibacteriaceae 0.35 12 0 G 1912216 Cutibacterium 0.35 12 12 S 1747 Cutibacterium acnes 0.06 2 0 G 2801844 Arachnia 0.06 2 2 S 1750 Arachnia propionica 0.03 1 0 G 72763 Tessaracoccus 0.03 1 1 S 1285901 Tessaracoccus defluvii 0.03 1 0 G 1912215 Acidipropionibacterium 0.03 1 1 S 1749 Acidipropionibacterium jensenii 0.06 2 0 F 85015 Nocardioidaceae 0.06 2 0 G 1839 Nocardioides 0.03 1 1 S 3095075 Nocardioides renjunii 0.03 1 0 G1 2615069 unclassified Nocardioides 0.03 1 1 S 2582905 Nocardioides sp. S-1144 0.35 12 0 O 85011 Kitasatosporales 0.35 12 0 F 2062 Streptomycetaceae 0.35 12 0 G 1883 Streptomyces 0.24 8 0 G1 2593676 unclassified Streptomyces 0.18 6 6 S 2903645 Streptomyces sp. NBC_00310 0.03 1 1 S 2975702 Streptomyces sp. NBC_00287 0.03 1 1 S 2981135 Streptomyces sp. HUAS 14-6 0.06 2 2 S 1961 Streptomyces virginiae 0.03 1 1 S 1690221 Streptomyces spongiicola 0.03 1 1 S 35621 Streptomyces mobaraensis 0.33 11 0 O 85007 Mycobacteriales 0.24 8 0 F 1653 Corynebacteriaceae 0.24 8 2 G 1716 Corynebacterium 0.12 4 4 S 43768 Corynebacterium matruchotii 0.06 2 2 S 679663 Corynebacterium canis 0.03 1 0 F 1762 Mycobacteriaceae 0.03 1 0 G 1866885 Mycolicibacterium 0.03 1 0 S 1810 Mycolicibacterium vaccae 0.03 1 1 S1 1354275 Mycolicibacterium vaccae 95051 0.03 1 0 F 85026 Gordoniaceae 0.03 1 0 G 2053 Gordonia 0.03 1 1 S 84595 Gordonia polyisoprenivorans 0.03 1 0 F 2805586 Lawsonellaceae 0.03 1 0 G 1847725 Lawsonella 0.03 1 1 S 1528099 Lawsonella clevelandensis 0.33 11 0 O 2037 Actinomycetales 0.33 11 4 F 2049 Actinomycetaceae 0.15 5 2 G 1654 Actinomyces 0.06 2 2 S 1960083 Actinomyces gaoshouyii 0.03 1 0 G1 2609248 unclassified Actinomyces 0.03 1 1 S 712122 Actinomyces sp. oral taxon 414 0.03 1 0 G 2529408 Schaalia 0.03 1 1 S 1660 Schaalia odontolytica 0.03 1 0 G 2912996 Changpingibacter 0.03 1 1 S 2758440 Changpingibacter yushuensis 0.03 1 0 O 85004 Bifidobacteriales 0.03 1 0 F 31953 Bifidobacteriaceae 0.03 1 0 G 1678 Bifidobacterium 0.03 1 0 S 216816 Bifidobacterium longum 0.03 1 1 S1 1931217 Bifidobacterium longum subsp. suillum 0.03 1 0 O 85010 Pseudonocardiales 0.03 1 0 F 2070 Pseudonocardiaceae 0.03 1 0 G 1813 Amycolatopsis 0.03 1 0 G1 2618356 unclassified Amycolatopsis 0.03 1 1 S 2861750 Amycolatopsis sp. TNS106 0.03 1 0 O 85013 Frankiales 0.03 1 0 F 74712 Frankiaceae 0.03 1 0 G 1854 Frankia 0.03 1 1 S 106370 Frankia casuarinae 0.03 1 0 O 622450 Actinopolysporales 0.03 1 0 F 622451 Actinopolysporaceae 0.03 1 0 G 1849 Actinopolyspora 0.03 1 1 S 414996 Actinopolyspora erythraea 0.03 1 0 O 1217098 Jiangellales 0.03 1 0 F 1217100 Jiangellaceae 0.03 1 0 G 281472 Jiangella 0.03 1 1 S 419479 Jiangella alkaliphila 0.24 8 0 C 84998 Coriobacteriia 0.24 8 0 O 1643822 Eggerthellales 0.24 8 1 F 1643826 Eggerthellaceae 0.18 6 0 G 1926677 Raoultibacter 0.18 6 6 S 1907662 Raoultibacter timonensis 0.03 1 1 G 447020 Adlercreutzia 2.60 88 0 D2 1798711 Cyanobacteriota/Melainabacteria group 2.60 88 3 P 1117 Cyanobacteriota 2.51 85 10 C 3028117 Cyanophyceae 1.42 48 1 C1 1301283 Oscillatoriophycideae 0.95 32 0 O 1150 Oscillatoriales 0.83 28 0 F 2934961 Sirenicapillariaceae 0.83 28 0 G 2596745 Limnospira 0.83 28 0 S 147322 Limnospira indica 0.83 28 28 S1 2760438 Limnospira indica BM01 0.09 3 0 F 1892252 Microcoleaceae 0.09 3 3 G 54304 Planktothrix 0.03 1 0 F 1892254 Oscillatoriaceae 0.03 1 0 G 1198 Phormidium 0.03 1 0 S 2974039 Phormidium yuhuli 0.03 1 1 S1 2940671 Phormidium yuhuli AB48 0.44 15 1 O 1118 Chroococcales 0.33 11 0 F 1890449 Microcystaceae 0.33 11 0 G 1125 Microcystis 0.33 11 0 G1 2643300 unclassified Microcystis 0.33 11 11 S 1967666 Microcystis sp. MC19 0.09 3 0 F 1890450 Aphanothecaceae 0.09 3 0 G 1453359 Candidatus Atelocyanobacterium 0.09 3 0 S 713887 Candidatus Atelocyanobacterium thalassa 0.09 3 3 S1 1285375 cyanobacterium endosymbiont of Braarudosphaera bigelowii 0.30 10 1 O 1161 Nostocales 0.18 6 0 F 1892259 Aphanizomenonaceae 0.12 4 0 G 752201 Sphaerospermopsis 0.12 4 0 S 984207 Sphaerospermopsis torques-reginae 0.12 4 4 S1 984208 Sphaerospermopsis torques-reginae ITEP-024 0.06 2 0 G 748770 Dolichospermum 0.06 2 0 S 136073 Dolichospermum compactum 0.06 2 2 S1 1973481 Dolichospermum compactum NIES-806 0.03 1 0 F 1162 Nostocaceae 0.03 1 0 G 264688 Trichormus 0.03 1 0 S 1164 Trichormus azollae 0.03 1 1 S1 551115 'Nostoc azollae' 0708 0.03 1 0 F 1185 Rivulariaceae 0.03 1 0 G 373984 Rivularia 0.03 1 0 G1 2676603 unclassified Rivularia (in: cyanobacteria) 0.03 1 1 S 373994 Rivularia sp. PCC 7116 0.03 1 0 F 2661849 Calotrichaceae 0.03 1 0 G 1186 Calothrix 0.03 1 0 G1 2619626 unclassified Calothrix 0.03 1 1 S 1170562 Calothrix sp. PCC 6303 0.18 6 6 O 307595 Gloeobacterales 0.15 5 1 O 1890424 Synechococcales 0.09 3 0 F 1890426 Synechococcaceae 0.09 3 0 G 1129 Synechococcus 0.09 3 1 G1 2626047 unclassified Synechococcus 0.06 2 2 S 321327 Synechococcus sp. JA-3-3Ab 0.03 1 0 F 2881426 Prochlorococcaceae 0.03 1 1 G 1218 Prochlorococcus 0.09 3 0 O 1955042 Gloeomargaritales 0.09 3 0 F 1955043 Gloeomargaritaceae 0.09 3 0 G 1188227 Gloeomargarita 0.09 3 0 S 1188228 Gloeomargarita lithophora 0.09 3 3 S1 1188229 Gloeomargarita lithophora Alchichica-D10 0.06 2 0 O 3079757 Gomontiellales 0.06 2 0 F 1890431 Chamaesiphonaceae 0.06 2 0 G 217161 Chamaesiphon 0.06 2 0 S 1173032 Chamaesiphon minutus 0.06 2 2 S1 1173020 Chamaesiphon minutus PCC 6605 0.03 1 0 O 3039985 Nodosilineales 0.03 1 0 F 3039986 Nodosilineaceae 0.03 1 0 G 170610 Halomicronema 0.03 1 0 S 1209493 Halomicronema hongdechloris 0.03 1 1 S1 1641165 Halomicronema hongdechloris C2206 0.98 33 17 P 544448 Mycoplasmatota 0.33 11 0 O 2790996 Mycoplasmoidales 0.21 7 0 F 2790998 Mycoplasmoidaceae 0.15 5 5 G 2995234 Mycoplasmoides 0.06 2 0 G 2791001 Malacoplasma 0.03 1 1 S 2116 Malacoplasma iowae 0.03 1 0 S 28227 Malacoplasma penetrans 0.03 1 1 S1 272633 Malacoplasma penetrans HF-2 0.12 4 0 F 2895623 Metamycoplasmataceae 0.12 4 1 G 2767358 Mycoplasmopsis 0.06 2 2 S 55603 Mycoplasmopsis caviae 0.03 1 1 S 2107 Mycoplasmopsis pulmonis 0.15 5 2 C 31969 Mollicutes 0.09 3 0 O 2085 Mycoplasmatales 0.09 3 0 F 2092 Mycoplasmataceae 0.09 3 0 G 2093 Mycoplasma 0.09 3 0 G1 2683645 unclassified Mycoplasma 0.09 3 3 S 1749074 Mycoplasma sp. (ex Biomphalaria glabrata) 0.24 8 0 P 200795 Chloroflexota 0.24 8 0 C 388447 Ktedonobacteria 0.24 8 0 O 388448 Ktedonobacterales 0.24 8 0 F 2692416 Ktedonosporobacteraceae 0.24 8 0 G 2692417 Ktedonosporobacter 0.24 8 8 S 2509675 Ktedonosporobacter rubrisoli 0.15 5 0 P 1297 Deinococcota 0.15 5 1 C 188787 Deinococci 0.12 4 0 O 118964 Deinococcales 0.12 4 0 F 183710 Deinococcaceae 0.12 4 2 G 1298 Deinococcus 0.03 1 0 G1 2623546 unclassified Deinococcus 0.03 1 1 S 2080419 Deinococcus sp. NW-56 0.03 1 1 S 1211322 Deinococcus metallilatus 0.09 3 0 P 67819 Armatimonadota 0.09 3 0 C 1077257 Chthonomonadia 0.09 3 0 O 1077263 Chthonomonadales 0.09 3 0 F 1077264 Chthonomonadaceae 0.09 3 0 G 1077265 Chthonomonas 0.09 3 0 S 454171 Chthonomonas calidirosea 0.09 3 3 S1 1303518 Chthonomonas calidirosea T49 1.39 47 2 P 200940 Thermodesulfobacteriota 1.24 42 0 C 3031651 Desulfuromonadia 1.24 42 0 O 69541 Desulfuromonadales 1.15 39 0 F 213421 Desulfuromonadaceae 1.15 39 38 G 890 Desulfuromonas 0.03 1 1 S 1603606 Desulfuromonas soudanensis 0.09 3 0 F 3031659 Geopsychrobacteraceae 0.09 3 0 G 37817 Desulfuromusa 0.09 3 0 G1 97902 environmental samples 0.09 3 3 S 219183 uncultured Desulfuromusa sp. 0.06 2 0 C 3024418 Desulfobacteria 0.06 2 0 O 213118 Desulfobacterales 0.06 2 0 F 213119 Desulfobacteraceae 0.06 2 2 G 2289 Desulfobacter 0.03 1 0 C 3031449 Desulfovibrionia 0.03 1 0 O 213115 Desulfovibrionales 0.03 1 0 F 194924 Desulfovibrionaceae 0.03 1 1 G 2035811 Pseudodesulfovibrio 1.24 42 0 D1 1783270 FCB group 1.24 42 0 D2 68336 Bacteroidota/Chlorobiota group 1.18 40 0 P 976 Bacteroidota 0.47 16 0 C 200643 Bacteroidia 0.47 16 0 O 171549 Bacteroidales 0.30 10 1 F 171552 Prevotellaceae 0.15 5 1 G 838 Prevotella 0.03 1 1 S 28132 Prevotella melaninogenica 0.03 1 1 S 470565 Prevotella histicola 0.03 1 0 G1 2638335 unclassified Prevotella 0.03 1 1 S 712471 Prevotella sp. oral taxon 475 0.03 1 1 S 2801997 Prevotella herbatica 0.06 2 0 G 2974251 Segatella 0.06 2 2 S 28135 Segatella oris 0.03 1 1 G 577309 Paraprevotella 0.03 1 0 G 2884814 Pseudoprevotella 0.03 1 1 S 2133944 Pseudoprevotella muciniphila 0.06 2 0 F 815 Bacteroidaceae 0.06 2 0 G 816 Bacteroides 0.06 2 0 G1 2646097 unclassified Bacteroides 0.06 2 2 S 2847299 Bacteroides sp. DH3716P 0.06 2 0 F 2005525 Tannerellaceae 0.06 2 0 G 375288 Parabacteroides 0.06 2 2 S 823 Parabacteroides distasonis 0.03 1 0 F 2005473 Muribaculaceae 0.03 1 0 G 2518497 Paramuribaculum 0.03 1 1 S 2094151 Paramuribaculum intestinale 0.03 1 0 F 2005520 Dysgonomonadaceae 0.03 1 0 G 156973 Dysgonomonas 0.03 1 1 S 45254 Dysgonomonas capnocytophagoides 0.38 13 0 C 117743 Flavobacteriia 0.38 13 0 O 200644 Flavobacteriales 0.24 8 1 F 49546 Flavobacteriaceae 0.21 7 1 G 1016 Capnocytophaga 0.12 4 4 S 1017 Capnocytophaga gingivalis 0.03 1 1 S 1019 Capnocytophaga sputigena 0.03 1 1 S 2708117 Capnocytophaga endodontalis 0.06 2 0 O1 313602 Flavobacteriales incertae sedis 0.06 2 0 G 336809 Candidatus Karelsulcia 0.06 2 2 S 336810 Candidatus Karelsulcia muelleri 0.06 2 0 F 2762318 Weeksellaceae 0.06 2 1 F1 2782232 Chryseobacterium group 0.03 1 1 G 59732 Chryseobacterium 0.03 1 0 F 39782 Blattabacteriaceae 0.03 1 1 G 34098 Blattabacterium 0.27 9 0 C 768503 Cytophagia 0.27 9 2 O 768507 Cytophagales 0.09 3 0 F 89373 Cytophagaceae 0.09 3 0 G 107 Spirosoma 0.09 3 3 S 2666025 Spirosoma endbachense 0.03 1 0 F 1501348 Amoebophilaceae 0.03 1 0 G 273135 Candidatus Cardinium 0.03 1 1 S 247481 Candidatus Cardinium hertigii 0.03 1 0 F 1853232 Hymenobacteraceae 0.03 1 1 G 89966 Hymenobacter 0.03 1 0 F 3141701 Flectobacillaceae 0.03 1 1 G 2676247 Aquirufa 0.03 1 0 F 3141702 Leadbetterellaceae 0.03 1 1 G 312278 Emticicia 0.06 2 0 C 117747 Sphingobacteriia 0.06 2 0 O 200666 Sphingobacteriales 0.06 2 0 F 84566 Sphingobacteriaceae 0.03 1 1 G 28453 Sphingobacterium 0.03 1 1 G 84567 Pedobacter 0.06 2 0 P 1090 Chlorobiota 0.06 2 0 C 191410 Chlorobiia 0.06 2 1 O 191411 Chlorobiales 0.03 1 0 F 2968741 Chloroherpetonaceae 0.03 1 0 G 100715 Chloroherpeton 0.03 1 0 S 100716 Chloroherpeton thalassium 0.03 1 1 S1 517418 Chloroherpeton thalassium ATCC 35110 0.80 27 0 D1 1783257 PVC group 0.35 12 0 P 203682 Planctomycetota 0.33 11 8 C 203683 Planctomycetia 0.06 2 0 O 2691355 Gemmatales 0.06 2 0 F 1914233 Gemmataceae 0.03 1 0 G 1382832 Telmatocola 0.03 1 1 S 1123043 Telmatocola sphagniphila 0.03 1 0 G 2807415 Urbifossiella 0.03 1 1 S 2528023 Urbifossiella limnaea 0.03 1 0 O 112 Planctomycetales 0.03 1 1 F 126 Planctomycetaceae 0.03 1 0 C 2897345 Candidatus Uabimicrobiia 0.03 1 0 O 2897347 Candidatus Uabimicrobiales 0.03 1 0 F 2897348 Candidatus Uabimicrobiaceae 0.03 1 0 G 2897349 Candidatus Uabimicrobium 0.03 1 1 S 2596890 Candidatus Uabimicrobium amorphum 0.30 10 0 P 74201 Verrucomicrobiota 0.15 5 0 P1 326457 Verrucomicrobiota incertae sedis 0.15 5 0 G 1541670 Methylacidimicrobium 0.15 5 5 G1 2730358 unclassified Methylacidimicrobium 0.12 4 0 C 203494 Verrucomicrobiia 0.12 4 0 O 48461 Verrucomicrobiales 0.12 4 0 F 203557 Verrucomicrobiaceae 0.06 2 0 G 2735 Verrucomicrobium 0.06 2 0 G1 2625155 unclassified Verrucomicrobium 0.06 2 2 S 1882831 Verrucomicrobium sp. GAS474 0.06 2 0 G 2911469 Sulfuriroseicoccus 0.06 2 2 S 2707525 Sulfuriroseicoccus oceanibius 0.03 1 1 C 414999 Opitutia 0.15 5 0 P 204428 Chlamydiota 0.15 5 5 C 204429 Chlamydiia 0.56 19 0 P 32066 Fusobacteriota 0.56 19 0 C 203490 Fusobacteriia 0.56 19 0 O 203491 Fusobacteriales 0.38 13 0 F 1129771 Leptotrichiaceae 0.38 13 5 G 32067 Leptotrichia 0.12 4 4 S 157687 Leptotrichia wadei 0.06 2 2 S 554406 Leptotrichia hongkongensis 0.03 1 1 S 157688 Leptotrichia hofstadii 0.03 1 1 S 157691 Leptotrichia shahii 0.15 5 0 F 203492 Fusobacteriaceae 0.15 5 3 G 848 Fusobacterium 0.03 1 1 S 851 Fusobacterium nucleatum 0.03 1 1 S 76857 Fusobacterium polymorphum 0.03 1 0 F 3072461 Haliovirgaceae 0.03 1 0 G 3072462 Haliovirga 0.03 1 1 S 2996794 Haliovirga abyssi 0.21 7 0 D1 2323 Bacteria incertae sedis 0.21 7 0 D2 1783234 Bacteria candidate phyla 0.21 7 0 D3 95901 Candidatus Dependentiae 0.21 7 0 C 2497643 Candidatus Babeliae 0.21 7 0 O 2497644 Candidatus Babeliales 0.21 7 0 F 2953756 Candidatus Chromulinivoraceae 0.21 7 0 G 2953757 Candidatus Chromulinivorax 0.21 7 7 S 2066483 Candidatus Chromulinivorax destructor 0.18 6 0 P 2818505 Myxococcota 0.18 6 0 P1 3031711 Polyangia 0.18 6 0 O 3031712 Polyangiales 0.18 6 0 F 49 Polyangiaceae 0.18 6 0 G 39643 Sorangium 0.18 6 6 S 56 Sorangium cellulosum 0.12 4 0 P 200783 Aquificota 0.12 4 0 C 187857 Aquificia 0.12 4 0 O 32069 Aquificales 0.09 3 0 F 224027 Hydrogenothermaceae 0.09 3 3 G 212790 Sulfurihydrogenibium 0.03 1 0 F 64898 Aquificaceae 0.03 1 0 G 168657 Hydrogenobaculum 0.03 1 0 G1 2622382 unclassified Hydrogenobaculum 0.03 1 1 S 380749 Hydrogenobaculum sp. Y04AAS1 0.12 4 0 P 29547 Campylobacterota 0.12 4 0 C 3031852 Epsilonproteobacteria 0.12 4 0 O 213849 Campylobacterales 0.09 3 0 F 2932623 Sulfurospirillaceae 0.09 3 0 G 57665 Sulfurospirillum 0.09 3 0 S 66821 Sulfurospirillum multivorans 0.09 3 3 S1 1150621 Sulfurospirillum multivorans DSM 12446 0.03 1 0 F 72294 Campylobacteraceae 0.03 1 1 G 194 Campylobacter 0.12 4 0 P 203691 Spirochaetota 0.12 4 0 C 203692 Spirochaetia 0.12 4 0 O 136 Spirochaetales 0.09 3 0 F 2845253 Treponemataceae 0.09 3 1 G 157 Treponema 0.06 2 2 S 409322 Treponema pedis 0.03 1 0 F 1643685 Borreliaceae 0.03 1 0 G 64895 Borreliella 0.03 1 1 S 29519 Borreliella garinii 0.03 1 0 P 2138240 Coprothermobacterota 0.03 1 0 C 2138243 Coprothermobacteria 0.03 1 0 O 2138246 Coprothermobacterales 0.03 1 0 F 2138247 Coprothermobacteraceae 0.03 1 0 G 68335 Coprothermobacter 0.03 1 0 S 35786 Coprothermobacter proteolyticus 0.03 1 1 S1 309798 Coprothermobacter proteolyticus DSM 5265 0.03 1 0 D1 1802340 Nitrospinae/Tectomicrobia group 0.03 1 0 P 1293497 Nitrospinota 0.03 1 0 C 1293498 Nitrospinia 0.03 1 0 O 1293499 Nitrospinales 0.03 1 0 F 407032 Nitrospinaceae 0.03 1 0 G 35800 Nitrospina 0.03 1 1 S 1323948 Nitrospina watsonii 0.03 1 0 D 10239 Viruses 0.03 1 0 D1 2731341 Duplodnaviria 0.03 1 0 K 2731360 Heunggongvirae 0.03 1 0 P 2731618 Uroviricota 0.03 1 0 C 2731619 Caudoviricetes 0.03 1 0 G 186789 Punavirus 0.03 1 0 S 10678 Punavirus P1 0.03 1 1 S1 2886926 Escherichia phage P1