18.17 593 593 U 0 unclassified 81.83 2671 3 R 1 root 81.65 2665 0 R1 131567 cellular organisms 81.65 2665 249 D 2 Bacteria 42.46 1386 30 P 1224 Pseudomonadota 30.15 984 72 C 1236 Gammaproteobacteria 14.25 465 0 O 135614 Lysobacterales 14.22 464 0 F 32033 Lysobacteraceae 14.19 463 0 G 338 Xanthomonas 14.19 463 463 S 29447 Xanthomonas albilineans 0.03 1 0 G 40323 Stenotrophomonas 0.03 1 0 G1 995085 Stenotrophomonas maltophilia group 0.03 1 1 S 40324 Stenotrophomonas maltophilia 0.03 1 1 F 1775411 Rhodanobacteraceae 8.82 288 27 O 91347 Enterobacterales 5.82 190 23 F 543 Enterobacteriaceae 1.56 51 1 G 561 Escherichia 1.53 50 44 S 562 Escherichia coli 0.12 4 4 S1 1322345 Escherichia coli ATCC 25922 0.03 1 1 S1 331112 Escherichia coli HS 0.03 1 1 S1 2874053 Escherichia coli O25:H1 1.10 36 0 F1 2890311 Klebsiella/Raoultella group 1.10 36 5 G 570 Klebsiella 0.74 24 20 S 573 Klebsiella pneumoniae 0.09 3 3 S1 72407 Klebsiella pneumoniae subsp. pneumoniae 0.03 1 1 S1 1049565 Klebsiella pneumoniae KCTC 2242 0.18 6 6 S 548 Klebsiella aerogenes 0.03 1 1 S 1134687 Klebsiella michiganensis 1.01 33 0 G 547 Enterobacter 0.98 32 0 G1 354276 Enterobacter cloacae complex 0.64 21 21 S 299767 Enterobacter ludwigii 0.25 8 7 S 158836 Enterobacter hormaechei 0.03 1 1 S1 1296536 Enterobacter hormaechei subsp. xiangfangensis 0.09 3 3 S 208224 Enterobacter kobei 0.03 1 1 S 881260 Enterobacter bugandensis 0.61 20 1 G 590 Salmonella 0.58 19 1 S 28901 Salmonella enterica 0.55 18 0 S1 59201 Salmonella enterica subsp. enterica 0.18 6 6 S2 600 Salmonella enterica subsp. enterica serovar Thompson 0.09 3 0 S2 611 Salmonella enterica subsp. enterica serovar Heidelberg 0.06 2 2 S3 1124936 Salmonella enterica subsp. enterica serovar Heidelberg str. 41578 0.03 1 1 S3 1160717 Salmonella enterica subsp. enterica serovar Heidelberg str. B182 0.09 3 3 S2 58712 Salmonella enterica subsp. enterica serovar Anatum 0.06 2 2 S2 2579247 Salmonella enterica subsp. enterica serovar Rough O:-:- 0.06 2 0 S2 58096 Salmonella enterica subsp. enterica serovar Bareilly 0.03 1 1 S3 1182172 Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000661 0.03 1 1 S3 1182177 Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000752 0.06 2 0 S2 1242084 Salmonella enterica subsp. enterica serovar Krefeld 0.06 2 2 S3 1242106 Salmonella enterica subsp. enterica serovar Krefeld str. SA20030536 0.31 10 8 F1 36866 unclassified Enterobacteriaceae 0.06 2 2 S 2675787 Enterobacteriaceae endosymbiont of Donacia tomentosa 0.25 8 0 F1 191675 Enterobacteriaceae incertae sedis 0.25 8 0 F2 84563 ant, tsetse, mealybug, aphid, etc. endosymbionts 0.12 4 0 F3 84564 ant endosymbionts 0.12 4 1 G 203804 Candidatus Blochmanniella 0.06 2 2 G1 711328 unclassified Candidatus Blochmanniella 0.03 1 1 S 251538 Candidatus Blochmannia ocreatus 0.09 3 0 F3 146507 aphid secondary symbionts 0.09 3 0 G 568987 Candidatus Hamiltonella 0.09 3 3 S 138072 Candidatus Hamiltonella defensa 0.03 1 0 G 1906660 Candidatus Mikella 0.03 1 1 S 1778264 Candidatus Mikella endobia 0.09 3 0 G 1177214 Candidatus Profftia 0.09 3 0 G1 2735709 unclassified Candidatus Profftia 0.09 3 3 S 2864218 Candidatus Profftia sp. (ex Adelges kitamiensis) 0.06 2 0 G 544 Citrobacter 0.06 2 0 G1 1344959 Citrobacter freundii complex 0.06 2 2 S 67828 Citrobacter gillenii 0.06 2 0 G 1903434 Atlantibacter 0.06 2 2 S 565 Atlantibacter hermannii 0.03 1 0 G 2815296 Jejubacter 0.03 1 1 S 2579935 Jejubacter calystegiae 0.03 1 0 G 1330547 Kosakonia 0.03 1 1 S 208223 Kosakonia cowanii 1.29 42 0 F 1903409 Erwiniaceae 1.16 38 0 G 551 Erwinia 1.16 38 38 S 1922217 Candidatus Erwinia haradaeae 0.12 4 2 G 53335 Pantoea 0.03 1 1 S 66269 Pantoea stewartii 0.03 1 0 G1 1654067 Pantoea agglomerans group 0.03 1 1 S 549 Pantoea agglomerans 0.43 14 1 F 1903414 Morganellaceae 0.15 5 0 G 581 Morganella 0.15 5 5 S 582 Morganella morganii 0.09 3 0 G 637 Arsenophonus 0.09 3 3 S 634113 Candidatus Arsenophonus lipoptenae 0.06 2 1 G 583 Proteus 0.03 1 1 S 584 Proteus mirabilis 0.06 2 0 G 586 Providencia 0.06 2 2 S 1715285 Candidatus Providencia siddallii 0.03 1 0 G 626 Xenorhabdus 0.03 1 0 S 40576 Xenorhabdus bovienii 0.03 1 1 S1 406818 Xenorhabdus bovienii SS-2004 0.25 8 0 F 1903411 Yersiniaceae 0.18 6 0 G 613 Serratia 0.15 5 5 S 138074 Serratia symbiotica 0.03 1 0 S 82996 Serratia plymuthica 0.03 1 1 S1 1006598 Serratia plymuthica RVH1 0.03 1 0 G 629 Yersinia 0.03 1 0 G1 1649845 Yersinia pseudotuberculosis complex 0.03 1 0 S 632 Yersinia pestis 0.03 1 1 S1 748678 Yersinia pestis str. Pestoides B 0.03 1 1 G 1927833 Candidatus Fukatsuia 0.18 6 0 F 2812006 Bruguierivoracaceae 0.18 6 0 G 84565 Sodalis 0.18 6 6 S 2697027 Sodalis ligni 0.03 1 0 F 3120698 Gallaecimonadaceae 0.03 1 0 G 745410 Gallaecimonas 0.03 1 1 S 3029055 Gallaecimonas kandeliae 1.13 37 0 O 135622 Alteromonadales 1.10 36 0 F 267888 Pseudoalteromonadaceae 0.98 32 0 G 2834759 Flocculibacter 0.98 32 32 S 2744479 Flocculibacter collagenilyticus 0.12 4 0 G 53246 Pseudoalteromonas 0.12 4 0 G1 194690 unclassified Pseudoalteromonas 0.12 4 4 S 649161 Pseudoalteromonas sp. 3J6 0.03 1 0 F 72275 Alteromonadaceae 0.03 1 0 F1 2903219 Alteromonas/Salinimonas group 0.03 1 0 G 226 Alteromonas 0.03 1 0 G1 2614992 unclassified Alteromonas 0.03 1 1 S 2961948 Alteromonas sp. LMIT006 0.89 29 0 O 135623 Vibrionales 0.89 29 1 F 641 Vibrionaceae 0.80 26 15 G 662 Vibrio 0.15 5 5 S 666 Vibrio cholerae 0.12 4 0 G1 2614977 unclassified Vibrio 0.12 4 4 S 2661922 Vibrio sp. THAF191d 0.03 1 0 S 52443 Vibrio tapetis 0.03 1 1 S1 1671868 Vibrio tapetis subsp. tapetis 0.03 1 0 G1 717610 Vibrio harveyi group 0.03 1 1 S 669 Vibrio harveyi 0.03 1 0 G 657 Photobacterium 0.03 1 1 S 553611 Photobacterium leiognathi 0.03 1 0 G 511678 Aliivibrio 0.03 1 0 S 40269 Aliivibrio salmonicida 0.03 1 1 S1 316275 Aliivibrio salmonicida LFI1238 0.77 25 0 O 72274 Pseudomonadales 0.77 25 0 F 135621 Pseudomonadaceae 0.70 23 9 G 286 Pseudomonas 0.15 5 0 G1 136845 Pseudomonas putida group 0.09 3 3 S 78327 Pseudomonas mosselii 0.06 2 1 S 303 Pseudomonas putida 0.03 1 1 S1 1196325 Pseudomonas putida DOT-T1E 0.09 3 0 G1 136841 Pseudomonas aeruginosa group 0.09 3 3 S 287 Pseudomonas aeruginosa 0.06 2 2 S 1302376 Candidatus Pseudomonas adelgestsugas 0.06 2 0 G1 196821 unclassified Pseudomonas 0.06 2 2 S 2762896 Pseudomonas sp. MPDS 0.03 1 1 S 2738125 Pseudomonas hefeiensis 0.03 1 0 G1 136843 Pseudomonas fluorescens group 0.03 1 0 S 47883 Pseudomonas synxantha 0.03 1 1 S1 96901 Pseudomonas synxantha BG33R 0.06 2 0 G 1654787 Thiopseudomonas 0.06 2 2 S 1697053 Thiopseudomonas alkaliphila 0.43 14 0 O 2887326 Moraxellales 0.43 14 0 F 468 Moraxellaceae 0.37 12 2 G 469 Acinetobacter 0.21 7 7 S 202956 Acinetobacter towneri 0.09 3 0 G1 909768 Acinetobacter calcoaceticus/baumannii complex 0.09 3 3 S 470 Acinetobacter baumannii 0.06 2 1 G 475 Moraxella 0.03 1 1 S 34062 Moraxella osloensis 0.31 10 0 O 135618 Methylococcales 0.31 10 0 F 403 Methylococcaceae 0.15 5 0 G 39773 Methylomicrobium 0.15 5 0 S 39775 Methylomicrobium album 0.15 5 5 S1 686340 Methylomicrobium album BG8 0.09 3 3 G 416 Methylomonas 0.03 1 0 G 762296 Methylovulum 0.03 1 1 S 1704499 Methylovulum psychrotolerans 0.03 1 0 G 1295378 Methylogaea 0.03 1 1 S 1295382 Methylogaea oryzae 0.21 7 0 O 135624 Aeromonadales 0.18 6 1 F 84642 Aeromonadaceae 0.09 3 0 G 642 Aeromonas 0.09 3 3 S 654 Aeromonas veronii 0.06 2 0 G 225143 Oceanisphaera 0.06 2 2 S 1903694 Oceanisphaera avium 0.03 1 0 F 83763 Succinivibrionaceae 0.03 1 0 G 83770 Succinivibrio 0.03 1 1 S 83771 Succinivibrio dextrinosolvens 0.21 7 0 O 135615 Cardiobacteriales 0.21 7 0 F 868 Cardiobacteriaceae 0.09 3 0 G 2717 Cardiobacterium 0.09 3 0 G1 2648856 unclassified Cardiobacterium 0.09 3 3 S 2866573 Cardiobacterium sp. Marseille-Q4385 0.06 2 0 G 869 Dichelobacter 0.06 2 2 S 870 Dichelobacter nodosus 0.06 2 0 G 13275 Suttonella 0.06 2 0 G1 2908647 unclassified Suttonella 0.06 2 2 S 2908648 Suttonella sp. R2A3 0.21 7 0 O 135619 Oceanospirillales 0.06 2 0 F 28256 Halomonadaceae 0.03 1 0 G 2745 Halomonas 0.03 1 1 S 3031727 Halomonas piscis 0.03 1 1 G 504090 Kushneria 0.06 2 0 F 135620 Oceanospirillaceae 0.06 2 0 G 267849 Nitrincola 0.06 2 2 S 2614693 Nitrincola iocasae 0.06 2 0 F 2823145 Pleioneaceae 0.06 2 0 G 1502941 Pleionea 0.06 2 2 S 3070815 Pleionea litopenaei 0.03 1 0 F 255527 Saccharospirillaceae 0.03 1 0 G 231683 Saccharospirillum 0.03 1 1 S 2161747 Saccharospirillum mangrovi 0.18 6 0 O 72273 Thiotrichales 0.06 2 1 F 34064 Francisellaceae 0.03 1 0 G 262 Francisella 0.03 1 0 S 263 Francisella tularensis 0.03 1 1 S1 119856 Francisella tularensis subsp. tularensis 0.06 2 0 F 135616 Piscirickettsiaceae 0.06 2 2 G 34067 Cycloclasticus 0.06 2 0 F 135617 Thiotrichaceae 0.06 2 2 G 1030 Thiothrix 0.18 6 0 O 135613 Chromatiales 0.09 3 1 F 1046 Chromatiaceae 0.03 1 1 G 1056 Thiocapsa 0.03 1 1 G 1227 Nitrosococcus 0.03 1 0 F 72276 Ectothiorhodospiraceae 0.03 1 0 G 1335745 Spiribacter 0.03 1 0 S 1335746 Spiribacter salinus 0.03 1 1 S1 1260251 Spiribacter salinus M19-40 0.03 1 0 F 2035710 Thioalkalibacteraceae 0.03 1 0 G 2035712 Guyparkeria 0.03 1 1 S 47960 Guyparkeria halophila 0.03 1 0 F 3067276 Sedimenticolaceae 0.03 1 0 G 1608298 Thiolapillus 0.03 1 1 S 1076588 Thiolapillus brandeum 0.12 4 0 O 135625 Pasteurellales 0.12 4 1 F 712 Pasteurellaceae 0.03 1 0 G 724 Haemophilus 0.03 1 0 G1 2609962 unclassified Haemophilus 0.03 1 1 S 712310 Haemophilus sp. oral taxon 036 0.03 1 0 G 745 Pasteurella 0.03 1 1 S 747 Pasteurella multocida 0.03 1 0 G 214906 Histophilus 0.03 1 1 S 731 Histophilus somni 0.09 3 0 O 118969 Legionellales 0.09 3 0 F 118968 Coxiellaceae 0.06 2 0 F1 134284 unclassified Coxiellaceae 0.06 2 2 S 1592897 Coxiella-like endosymbiont 0.03 1 0 G 254245 Aquicella 0.03 1 1 S 254247 Aquicella siphonis 0.06 2 0 O 1706369 Cellvibrionales 0.03 1 0 F 1706371 Cellvibrionaceae 0.03 1 1 G 2425 Teredinibacter 0.03 1 0 F 1706372 Halieaceae 0.03 1 0 G 3040948 Candidatus Paraluminiphilus 0.03 1 1 S 2518994 Candidatus Paraluminiphilus aquimaris 0.03 1 0 C1 118884 Gammaproteobacteria incertae sedis 0.03 1 0 G 204619 Candidatus Nardonella 0.03 1 1 S 1971485 Candidatus Nardonella dryophthoridicola 0.03 1 0 O 2975284 Candidatus Comchoanobacterales 0.03 1 0 F 2975285 Candidatus Comchoanobacteraceae 0.03 1 0 G 2975286 Candidatus Comchoanobacter 0.03 1 1 S 2919598 Candidatus Comchoanobacter bicostacola 9.04 295 6 C 28211 Alphaproteobacteria 7.26 237 0 O 204441 Rhodospirillales 7.08 231 0 F 2844601 Stellaceae 7.08 231 0 G 93 Stella 7.08 231 231 S 94 Stella humosa 0.15 5 2 F 433 Acetobacteraceae 0.06 2 0 G 512381 Acidisoma 0.06 2 0 G1 2634065 unclassified Acidisoma 0.06 2 2 S 3040935 Acidisoma sp. PAMC 29798 0.03 1 0 G 1706033 Sediminicoccus 0.03 1 1 S 1225128 Sediminicoccus rosea 0.03 1 0 F 41295 Rhodospirillaceae 0.03 1 0 G 111830 Defluviicoccus 0.03 1 1 S 111831 Defluviicoccus vanus 0.70 23 0 O 204458 Caulobacterales 0.70 23 0 F 76892 Caulobacteraceae 0.70 23 0 G 41275 Brevundimonas 0.70 23 0 G1 2622653 unclassified Brevundimonas 0.70 23 23 S 2560058 Brevundimonas sp. Bb-A 0.64 21 2 O 356 Hyphomicrobiales 0.37 12 0 F 82115 Rhizobiaceae 0.34 11 8 F1 227290 Rhizobium/Agrobacterium group 0.06 2 1 G 379 Rhizobium 0.03 1 0 S 384 Rhizobium leguminosarum 0.03 1 1 S1 386 Rhizobium leguminosarum bv. trifolii 0.03 1 0 G 357 Agrobacterium 0.03 1 0 G1 1183400 Agrobacterium tumefaciens complex 0.03 1 1 S 358 Agrobacterium tumefaciens 0.03 1 0 G 34019 Liberibacter 0.03 1 0 S 556287 Candidatus Liberibacter solanacearum 0.03 1 1 S1 658172 Candidatus Liberibacter solanacearum CLso-ZC1 0.15 5 2 F 119045 Methylobacteriaceae 0.09 3 0 G 186650 Microvirga 0.09 3 3 S 864069 Microvirga lotononidis 0.03 1 0 F 2813035 Parvibaculaceae 0.03 1 0 G 256616 Parvibaculum 0.03 1 0 S 256618 Parvibaculum lavamentivorans 0.03 1 1 S1 402881 Parvibaculum lavamentivorans DS-1 0.03 1 0 F 255475 Aurantimonadaceae 0.03 1 1 G 414371 Aureimonas 0.18 6 2 O 204457 Sphingomonadales 0.09 3 1 F 41297 Sphingomonadaceae 0.03 1 0 G 165696 Novosphingobium 0.03 1 0 G1 2644732 unclassified Novosphingobium 0.03 1 1 S 2675225 Novosphingobium sp. Gsoil 351 0.03 1 1 G 13687 Sphingomonas 0.03 1 0 F 2820280 Sphingosinicellaceae 0.03 1 0 G 335405 Sphingosinicella 0.03 1 0 G1 2644549 unclassified Sphingosinicella 0.03 1 1 S 1892855 Sphingosinicella sp. BN140058 0.06 2 0 O 2800059 Maricaulales 0.06 2 2 F 2800061 Maricaulaceae 2.27 74 8 C 28216 Betaproteobacteria 1.01 33 2 O 80840 Burkholderiales 0.58 19 0 F 119060 Burkholderiaceae 0.28 9 0 G 48736 Ralstonia 0.25 8 0 G1 3116862 Ralstonia solanacearum species complex 0.25 8 8 S 305 Ralstonia solanacearum 0.03 1 0 G1 209769 unclassified Ralstonia 0.03 1 1 S 2880990 Ralstonia sp. RS650 0.25 8 0 G 47670 Lautropia 0.25 8 8 S 47671 Lautropia mirabilis 0.06 2 0 G 32008 Burkholderia 0.03 1 0 G1 87882 Burkholderia cepacia complex 0.03 1 1 S 60552 Burkholderia vietnamiensis 0.03 1 0 G1 111527 pseudomallei group 0.03 1 0 S 28450 Burkholderia pseudomallei 0.03 1 1 S1 1249468 Burkholderia pseudomallei NCTC 13178 0.18 6 0 F 75682 Oxalobacteraceae 0.06 2 2 G 29580 Janthinobacterium 0.06 2 0 G 401469 Undibacterium 0.06 2 0 G1 2630295 unclassified Undibacterium 0.06 2 2 S 3048609 Undibacterium sp. CCC3.4 0.06 2 0 F1 2895353 Telluria group 0.06 2 0 G 149698 Massilia 0.06 2 0 G1 2609279 unclassified Massilia 0.06 2 2 S 1707785 Massilia sp. WG5 0.12 4 0 F 80864 Comamonadaceae 0.09 3 0 G 283 Comamonas 0.09 3 3 S 2743470 Comamonas antarctica 0.03 1 1 G 34072 Variovorax 0.06 2 0 F 506 Alcaligenaceae 0.06 2 0 G 1472344 Basilea 0.06 2 0 S 1472345 Basilea psittacipulmonis 0.06 2 2 S1 1072685 Basilea psittacipulmonis DSM 24701 0.92 30 2 O 206351 Neisseriales 0.83 27 12 F 481 Neisseriaceae 0.34 11 1 G 482 Neisseria 0.15 5 4 S 487 Neisseria meningitidis 0.03 1 1 S1 942513 Neisseria meningitidis WUE 2594 0.09 3 3 S 495 Neisseria elongata 0.06 2 2 S 485 Neisseria gonorrhoeae 0.09 3 0 G 32257 Kingella 0.09 3 3 S 505 Kingella oralis 0.03 1 0 G 71 Simonsiella 0.03 1 1 S 72 Simonsiella muelleri 0.03 1 1 F 2897177 Chitinibacteraceae 0.06 2 0 C1 119066 Betaproteobacteria incertae sedis 0.03 1 1 G 33055 Candidatus Kinetoplastibacterium 0.03 1 0 G 1301080 Candidatus Nasuia 0.03 1 1 S 1160784 Candidatus Nasuia deltocephalinicola 0.03 1 0 O 32003 Nitrosomonadales 0.03 1 0 F 2008790 Thiobacillaceae 0.03 1 0 G 1938335 Sulfuritortus 0.03 1 1 S 1914471 Sulfuritortus calidifontis 0.09 3 0 C 1807140 Acidithiobacillia 0.09 3 0 O 225057 Acidithiobacillales 0.09 3 0 F 225058 Acidithiobacillaceae 0.09 3 3 G 119977 Acidithiobacillus 26.19 855 66 D1 1783272 Terrabacteria group 14.34 468 12 P 1239 Bacillota 11.27 368 11 C 91061 Bacilli 6.04 197 7 O 186826 Lactobacillales 3.06 100 0 F 81852 Enterococcaceae 3.00 98 0 G 1350 Enterococcus 2.76 90 90 S 1351 Enterococcus faecalis 0.12 4 4 S 1354 Enterococcus hirae 0.09 3 3 S 1352 Enterococcus faecium 0.03 1 1 S 44008 Enterococcus cecorum 0.03 1 1 G 2737 Vagococcus 0.03 1 0 G 51668 Tetragenococcus 0.03 1 1 S 51669 Tetragenococcus halophilus 1.59 52 0 F 1300 Streptococcaceae 1.56 51 22 G 1301 Streptococcus 0.31 10 10 S 1308 Streptococcus thermophilus 0.09 3 3 S 2490633 Streptococcus periodonticum 0.09 3 3 S 68892 Streptococcus infantis 0.06 2 2 G1 2608887 unclassified Streptococcus 0.06 2 2 S 1310 Streptococcus sobrinus 0.06 2 1 S 1311 Streptococcus agalactiae 0.03 1 1 S1 1203670 Streptococcus agalactiae GD201008-001 0.06 2 1 S 1313 Streptococcus pneumoniae 0.03 1 1 S1 516950 Streptococcus pneumoniae CGSP14 0.06 2 2 S 1314 Streptococcus pyogenes 0.06 2 2 S 1326 Streptococcus acidominimus 0.03 1 1 S 1811193 Streptococcus pantholopis 0.03 1 0 G 1357 Lactococcus 0.03 1 1 S 1359 Lactococcus cremoris 0.95 31 2 F 33958 Lactobacillaceae 0.15 5 0 G 1578 Lactobacillus 0.09 3 3 S 33959 Lactobacillus johnsonii 0.03 1 0 S 1584 Lactobacillus delbrueckii 0.03 1 0 S1 1585 Lactobacillus delbrueckii subsp. bulgaricus 0.03 1 1 S2 321956 Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 0.03 1 1 S 151781 Lactobacillus intestinalis 0.12 4 1 G 2742598 Limosilactobacillus 0.06 2 2 S 1613 Limosilactobacillus fermentum 0.03 1 1 S 1598 Limosilactobacillus reuteri 0.12 4 0 G 2759736 Lacticaseibacillus 0.09 3 1 S 1597 Lacticaseibacillus paracasei 0.03 1 0 S1 47714 Lacticaseibacillus paracasei subsp. paracasei 0.03 1 1 S2 537973 Lacticaseibacillus paracasei subsp. paracasei 8700:2 0.03 1 1 S1 113557 Lacticaseibacillus paracasei subsp. tolerans 0.03 1 1 S 3025672 Lacticaseibacillus pabuli 0.09 3 0 G 2767886 Levilactobacillus 0.06 2 2 S 267363 Levilactobacillus zymae 0.03 1 1 S 1580 Levilactobacillus brevis 0.09 3 1 G 2767887 Ligilactobacillus 0.03 1 1 S 1624 Ligilactobacillus salivarius 0.03 1 1 S 89059 Ligilactobacillus acidipiscis 0.09 3 2 G 46255 Weissella 0.03 1 1 S 155866 Weissella soli 0.06 2 2 G 2767893 Lentilactobacillus 0.03 1 0 G 2767874 Acetilactobacillus 0.03 1 1 S 1720083 Acetilactobacillus jinshanensis 0.03 1 0 G 2767881 Fructilactobacillus 0.03 1 1 S 1625 Fructilactobacillus sanfranciscensis 0.03 1 0 G 2767842 Lactiplantibacillus 0.03 1 1 S 1590 Lactiplantibacillus plantarum 0.03 1 0 G 2930384 Periweissella 0.03 1 1 S 2506420 Periweissella cryptocerci 0.03 1 1 G 1243 Leuconostoc 0.15 5 0 F 186827 Aerococcaceae 0.09 3 0 G 1375 Aerococcus 0.09 3 3 S 87541 Aerococcus christensenii 0.03 1 0 G 89092 Ignavigranum 0.03 1 1 S 89093 Ignavigranum ruoffiae 0.03 1 0 G 2862144 Ruoffia 0.03 1 1 S 87458 Ruoffia tabacinasalis 0.06 2 0 F 186828 Carnobacteriaceae 0.06 2 0 G 117563 Granulicatella 0.06 2 2 S 137732 Granulicatella elegans 4.90 160 6 O 1385 Bacillales 2.54 83 1 F 186817 Bacillaceae 1.41 46 3 G 1386 Bacillus 0.61 20 0 G1 653685 Bacillus subtilis group 0.55 18 0 G2 1938374 Bacillus amyloliquefaciens group 0.37 12 12 S 492670 Bacillus velezensis 0.15 5 5 S 1390 Bacillus amyloliquefaciens 0.03 1 1 S 659243 Bacillus siamensis 0.06 2 0 S 1423 Bacillus subtilis 0.06 2 2 S1 86029 Bacillus subtilis subsp. natto 0.55 18 0 G1 86661 Bacillus cereus group 0.25 8 6 S 1396 Bacillus cereus 0.03 1 1 S1 572264 Bacillus cereus 03BB102 0.03 1 1 S1 526991 Bacillus cereus AH676 0.18 6 4 S 1428 Bacillus thuringiensis 0.03 1 1 S1 180850 Bacillus thuringiensis serovar indiana 0.03 1 1 S1 412694 Bacillus thuringiensis str. Al Hakam 0.12 4 4 S 1392 Bacillus anthracis 0.06 2 0 G1 185979 unclassified Bacillus (in: firmicutes) 0.03 1 1 S 467262 Bacillus sp. T3 0.03 1 1 S 2841656 Bacillus sp. ZHX3 0.06 2 0 G1 1792192 Bacillus altitudinis complex 0.06 2 2 S 293387 Bacillus altitudinis 0.03 1 1 S 1408 Bacillus pumilus 0.46 15 0 G 84406 Virgibacillus 0.46 15 15 S 447199 Virgibacillus salarius 0.21 7 0 G 2893057 Shouchella 0.21 7 7 S 79880 Shouchella clausii 0.06 2 1 G 129337 Geobacillus 0.03 1 0 S 33940 Geobacillus thermodenitrificans 0.03 1 1 S1 420246 Geobacillus thermodenitrificans NG80-2 0.06 2 0 G 175304 Lentibacillus 0.06 2 2 S 1472767 Lentibacillus amyloliquefaciens 0.06 2 0 G 2800373 Priestia 0.06 2 2 S 1404 Priestia megaterium 0.03 1 0 G 2837510 Siminovitchia 0.03 1 1 S 254758 Siminovitchia fortis 0.03 1 0 G 2675232 Neobacillus 0.03 1 1 S 220687 Neobacillus novalis 0.03 1 0 G 2675229 Peribacillus 0.03 1 0 G1 2675266 unclassified Peribacillus 0.03 1 1 S 2921364 Peribacillus sp. FSL E2-0218 0.03 1 0 G 1906945 Parageobacillus 0.03 1 1 S 153151 Parageobacillus toebii 0.03 1 0 G 2785518 Radiobacillus 0.03 1 1 S 2594883 Radiobacillus deserti 0.03 1 1 G 2837504 Heyndrickxia 0.03 1 0 G 2893055 Halalkalibacterium (ex Joshi et al. 2022) 0.03 1 0 S 86665 Halalkalibacterium halodurans 0.03 1 1 S1 272558 Halalkalibacterium halodurans C-125 0.03 1 0 G 150247 Anoxybacillus 0.03 1 1 G1 2639704 unclassified Anoxybacillus 1.29 42 0 F 90964 Staphylococcaceae 1.26 41 1 G 1279 Staphylococcus 0.89 29 29 S 1280 Staphylococcus aureus 0.09 3 3 S 1282 Staphylococcus epidermidis 0.09 3 3 S 28035 Staphylococcus lugdunensis 0.06 2 2 S 70255 Staphylococcus condimenti 0.03 1 1 S 1290 Staphylococcus hominis 0.03 1 1 S 29378 Staphylococcus arlettae 0.03 1 1 S 2044912 Staphylococcus debuckii 0.03 1 1 G 2803850 Mammaliicoccus 0.34 11 0 F 186820 Listeriaceae 0.34 11 3 G 1637 Listeria 0.12 4 0 S 1638 Listeria ivanovii 0.12 4 0 S1 202751 Listeria ivanovii subsp. ivanovii 0.12 4 4 S2 881621 Listeria ivanovii subsp. ivanovii PAM 55 0.09 3 0 G1 2642072 unclassified Listeria 0.09 3 3 S 1844999 Listeria sp. PSOL-1 0.03 1 1 S 1639 Listeria monocytogenes 0.18 6 0 F 186822 Paenibacillaceae 0.09 3 1 G 44249 Paenibacillus 0.06 2 2 S 79263 Paenibacillus chitinolyticus 0.09 3 0 F1 85151 Aneurinibacillus group 0.09 3 2 G 55079 Aneurinibacillus 0.03 1 1 S 1500254 Aneurinibacillus soli 0.09 3 1 F 186823 Alicyclobacillaceae 0.06 2 0 G 29330 Alicyclobacillus 0.06 2 2 S 2931921 Alicyclobacillus mengziensis 0.09 3 0 F 539738 Gemellaceae 0.09 3 3 G 1378 Gemella 0.06 2 0 F 186821 Sporolactobacillaceae 0.06 2 0 G 2077 Sporolactobacillus 0.06 2 2 S 269673 Sporolactobacillus terrae 0.06 2 2 F 186824 Thermoactinomycetaceae 0.03 1 0 F 186818 Planococcaceae 0.03 1 1 G 1569 Sporosarcina 0.03 1 0 O1 539002 Bacillales incertae sedis 0.03 1 0 O2 539742 Bacillales Family XII. Incertae Sedis 0.03 1 0 G 33986 Exiguobacterium 0.03 1 1 S 1428684 Exiguobacterium alkaliphilum 1.93 63 4 C 186801 Clostridia 1.23 40 9 O 186802 Eubacteriales 0.37 12 0 F 31979 Clostridiaceae 0.37 12 2 G 1485 Clostridium 0.15 5 5 S 1502 Clostridium perfringens 0.06 2 0 S 1493 Clostridium cellulovorans 0.06 2 2 S1 573061 Clostridium cellulovorans 743B 0.03 1 0 G1 2614128 unclassified Clostridium 0.03 1 1 S 3070996 Clostridium sp. MB40-C1 0.03 1 1 S 1492 Clostridium butyricum 0.03 1 1 S 2320868 Clostridium manihotivorum 0.31 10 9 F 31984 Heliobacteriaceae 0.03 1 0 G 79598 Heliorestis 0.03 1 1 S 356322 Heliorestis convoluta 0.21 7 0 F 216572 Oscillospiraceae 0.12 4 0 G 1263 Ruminococcus 0.09 3 3 S 2564099 Ruminococcus bovis 0.03 1 1 S 1161942 Ruminococcus champanellensis 0.03 1 0 G 216851 Faecalibacterium 0.03 1 1 S 3030638 Faecalibacterium taiwanense 0.03 1 0 G 2304687 Petroclostridium 0.03 1 0 G1 2619260 unclassified Petroclostridium 0.03 1 1 S 3045146 Petroclostridium sp. X23 0.03 1 0 G 2038676 Paludihabitans 0.03 1 0 G1 2644543 unclassified Paludihabitans 0.03 1 1 S 3070656 Paludicola sp. MB14-C6 0.03 1 0 F 186806 Eubacteriaceae 0.03 1 1 G 33951 Acetobacterium 0.03 1 0 O1 538999 Eubacteriales incertae sedis 0.03 1 0 G 1686313 Fenollaria 0.03 1 1 S 938288 Fenollaria massiliensis 0.49 16 0 O 53433 Halanaerobiales 0.43 14 0 F 53434 Halobacteroidaceae 0.43 14 0 G 42417 Halobacteroides 0.43 14 0 S 42422 Halobacteroides halobius 0.43 14 14 S1 748449 Halobacteroides halobius DSM 5150 0.06 2 0 O1 387655 Halanaerobiales incertae sedis 0.06 2 0 G 1769008 Anoxybacter 0.06 2 2 S 1323375 Anoxybacter fermentans 0.06 2 0 O 3082720 Peptostreptococcales 0.03 1 0 F 186804 Peptostreptococcaceae 0.03 1 0 G 1870884 Clostridioides 0.03 1 1 S 1496 Clostridioides difficile 0.03 1 0 F 3030910 Anaerovoracaceae 0.03 1 0 G 1926556 Emergencia 0.03 1 0 G1 2642996 unclassified Emergencia 0.03 1 1 S 3114296 Emergencia sp. JLR.KK010 0.03 1 0 O 3085636 Lachnospirales 0.03 1 0 F 186803 Lachnospiraceae 0.03 1 1 G 1164882 Lachnoanaerobaculum 0.52 17 1 C 909932 Negativicutes 0.28 9 0 O 909929 Selenomonadales 0.25 8 0 F 1843491 Selenomonadaceae 0.21 7 4 G 970 Selenomonas 0.09 3 0 G1 2637378 unclassified Selenomonas 0.06 2 2 S 1884263 Selenomonas sp. oral taxon 920 0.03 1 1 S 712538 Selenomonas sp. oral taxon 478 0.03 1 0 G 864 Pectinatus 0.03 1 1 S 865 Pectinatus frisingensis 0.03 1 0 F 1843490 Sporomusaceae 0.03 1 0 G 81463 Anaeromusa 0.03 1 0 G1 673272 environmental samples 0.03 1 1 S 673273 uncultured Anaeromusa sp. 0.21 7 0 O 1843489 Veillonellales 0.21 7 0 F 31977 Veillonellaceae 0.18 6 5 G 29465 Veillonella 0.03 1 1 S 29466 Veillonella parvula 0.03 1 0 G 39948 Dialister 0.03 1 1 S 487173 Dialister succinatiphilus 0.18 6 0 C 1737404 Tissierellia 0.18 6 0 O 1737405 Tissierellales 0.15 5 0 F 1570339 Peptoniphilaceae 0.06 2 1 G 165779 Anaerococcus 0.03 1 1 S 1755241 Anaerococcus nagyae 0.03 1 0 G 150022 Finegoldia 0.03 1 1 S 1260 Finegoldia magna 0.03 1 0 G 162289 Peptoniphilus 0.03 1 1 S 54005 Peptoniphilus harei 0.03 1 0 G 1161127 Murdochiella 0.03 1 1 S 1852373 Murdochiella vaginalis 0.03 1 0 F 2992717 Acidilutibacteraceae 0.03 1 0 G 2992720 Acidilutibacter 0.03 1 1 S 2507161 Acidilutibacter cellobiosedens 0.03 1 0 C 526524 Erysipelotrichia 0.03 1 0 O 526525 Erysipelotrichales 0.03 1 0 F 128827 Erysipelotrichaceae 0.03 1 0 G 1647 Erysipelothrix 0.03 1 1 S 1648 Erysipelothrix rhusiopathiae 0.03 1 0 C 3086086 Dethiobacteria 0.03 1 0 O 3086087 Dethiobacterales 0.03 1 0 F 3086088 Dethiobacteraceae 0.03 1 0 G 338648 Candidatus Contubernalis 0.03 1 1 S 338645 Candidatus Contubernalis alkalaceticus 5.18 169 0 P 201174 Actinomycetota 4.93 161 3 C 1760 Actinomycetes 2.08 68 0 O 85011 Kitasatosporales 2.08 68 0 F 2062 Streptomycetaceae 2.08 68 1 G 1883 Streptomyces 1.99 65 1 G1 2593676 unclassified Streptomyces 1.78 58 58 S 2099583 Streptomyces sp. ICC1 0.12 4 4 S 2903645 Streptomyces sp. NBC_00310 0.03 1 1 S 2903865 Streptomyces sp. NBC_01435 0.03 1 1 S 3043734 Streptomyces sp. BPTC-684 0.03 1 1 S 887464 Streptomyces laculatispora 0.03 1 0 G1 2838335 Streptomyces aurantiacus group 0.03 1 1 S 58343 Streptomyces canus 1.01 33 2 O 85006 Micrococcales 0.46 15 1 F 1268 Micrococcaceae 0.31 10 5 G 32207 Rothia 0.15 5 5 S 2047 Rothia dentocariosa 0.09 3 3 G 1269 Micrococcus 0.03 1 0 G 1742989 Glutamicibacter 0.03 1 1 S 37929 Glutamicibacter nicotianae 0.28 9 0 F 2805591 Tropherymataceae 0.28 9 0 G 2038 Tropheryma 0.28 9 9 S 2039 Tropheryma whipplei 0.18 6 2 F 85023 Microbacteriaceae 0.06 2 0 G 33877 Agromyces 0.06 2 2 S 2585717 Agromyces laixinhei 0.03 1 0 G 2034 Curtobacterium 0.03 1 0 G1 257496 unclassified Curtobacterium 0.03 1 1 S 2175655 Curtobacterium sp. MCPF17_052 0.03 1 0 F1 1655488 Luna cluster 0.03 1 0 F2 1655489 Luna-1 subcluster 0.03 1 0 G 529883 Rhodoluna 0.03 1 1 S 529884 Rhodoluna lacicola 0.03 1 0 F 85019 Brevibacteriaceae 0.03 1 0 G 1696 Brevibacterium 0.03 1 0 G1 2614124 unclassified Brevibacterium 0.03 1 1 S 2999062 Brevibacterium sp. BRM-1 0.70 23 4 O 85009 Propionibacteriales 0.58 19 3 F 31957 Propionibacteriaceae 0.34 11 2 G 1912216 Cutibacterium 0.28 9 9 S 1747 Cutibacterium acnes 0.06 2 0 G 29404 Microlunatus 0.06 2 0 G1 2619695 unclassified Microlunatus 0.06 2 2 S 2672569 Microlunatus sp. Gsoil 973 0.06 2 0 G 72763 Tessaracoccus 0.06 2 2 S 1285901 Tessaracoccus defluvii 0.03 1 0 G 2801844 Arachnia 0.03 1 1 S 1750 Arachnia propionica 0.52 17 0 O 85007 Mycobacteriales 0.43 14 0 F 1653 Corynebacteriaceae 0.43 14 5 G 1716 Corynebacterium 0.09 3 3 S 598660 Corynebacterium pyruviciproducens 0.06 2 2 S 43765 Corynebacterium amycolatum 0.06 2 2 S 679663 Corynebacterium canis 0.03 1 1 S 61592 Corynebacterium durum 0.03 1 1 S 43768 Corynebacterium matruchotii 0.06 2 0 F 2805586 Lawsonellaceae 0.06 2 0 G 1847725 Lawsonella 0.06 2 2 S 1528099 Lawsonella clevelandensis 0.03 1 0 F 1762 Mycobacteriaceae 0.03 1 1 G 1866885 Mycolicibacterium 0.21 7 0 O 2037 Actinomycetales 0.21 7 0 F 2049 Actinomycetaceae 0.09 3 3 G 1654 Actinomyces 0.09 3 1 G 2529408 Schaalia 0.06 2 2 S 1660 Schaalia odontolytica 0.03 1 0 G 184869 Varibaculum 0.03 1 1 S 2811781 Varibaculum prostatecancerukia 0.06 2 0 O 2039638 Candidatus Nanopelagicales 0.06 2 0 F 2162846 Candidatus Nanopelagicaceae 0.06 2 1 G 2039639 Candidatus Nanopelagicus 0.03 1 1 S 1884915 Candidatus Nanopelagicus hibericus 0.06 2 0 O 622452 Kineosporiales 0.06 2 0 F 83778 Kineosporiaceae 0.06 2 2 G 33981 Kineococcus 0.03 1 0 O 85004 Bifidobacteriales 0.03 1 0 F 31953 Bifidobacteriaceae 0.03 1 0 G 1678 Bifidobacterium 0.03 1 0 S 216816 Bifidobacterium longum 0.03 1 1 S1 1931217 Bifidobacterium longum subsp. suillum 0.03 1 0 O 85008 Micromonosporales 0.03 1 0 F 28056 Micromonosporaceae 0.03 1 0 G 1873 Micromonospora 0.03 1 1 S 1881 Micromonospora viridifaciens 0.03 1 0 O 85013 Frankiales 0.03 1 0 F 74712 Frankiaceae 0.03 1 0 G 1854 Frankia 0.03 1 1 S 106370 Frankia casuarinae 0.03 1 0 O 622450 Actinopolysporales 0.03 1 0 F 622451 Actinopolysporaceae 0.03 1 0 G 1849 Actinopolyspora 0.03 1 1 S 414996 Actinopolyspora erythraea 0.03 1 0 O 1217098 Jiangellales 0.03 1 0 F 1217100 Jiangellaceae 0.03 1 1 G 281472 Jiangella 0.03 1 0 O 1643682 Geodermatophilales 0.03 1 1 F 85030 Geodermatophilaceae 0.25 8 0 C 84998 Coriobacteriia 0.21 7 0 O 1643822 Eggerthellales 0.21 7 0 F 1643826 Eggerthellaceae 0.15 5 0 G 1926677 Raoultibacter 0.15 5 5 S 1907662 Raoultibacter timonensis 0.03 1 0 G 79603 Denitrobacterium 0.03 1 1 S 79604 Denitrobacterium detoxificans 0.03 1 1 G 447020 Adlercreutzia 0.03 1 0 O 84999 Coriobacteriales 0.03 1 0 F 1643824 Atopobiaceae 0.03 1 0 G 2767327 Fannyhessea 0.03 1 1 S 82135 Fannyhessea vaginae 2.39 78 17 P 544448 Mycoplasmatota 1.69 55 1 C 31969 Mollicutes 1.26 41 1 O 186328 Entomoplasmatales 1.23 40 0 F 2131 Spiroplasmataceae 1.23 40 22 G 2132 Spiroplasma 0.34 11 11 S 2139 Spiroplasma clarkii 0.12 4 2 G1 2637901 unclassified Spiroplasma 0.03 1 1 S 2792084 Spiroplasma endosymbiont of 'Nebria riversi' 0.03 1 1 S 3066287 Spiroplasma endosymbiont of Polydrusus cervinus 0.03 1 0 S 2137 Spiroplasma apis 0.03 1 1 S1 1276258 Spiroplasma apis B31 0.03 1 0 S 216935 Spiroplasma culicicola 0.03 1 1 S1 1276246 Spiroplasma culicicola AES-1 0.03 1 0 S 47835 Spiroplasma phoeniceum 0.03 1 1 S1 1276259 Spiroplasma phoeniceum P40 0.34 11 0 O 2085 Mycoplasmatales 0.34 11 0 F 2092 Mycoplasmataceae 0.34 11 1 G 2093 Mycoplasma 0.18 6 0 G1 2683645 unclassified Mycoplasma 0.09 3 3 S 1749074 Mycoplasma sp. (ex Biomphalaria glabrata) 0.06 2 2 S 2801918 Mycoplasma sp. E35C 0.03 1 1 S 754514 Mycoplasma sp. Mirounga ES2805-ORL 0.12 4 0 G1 656088 Mycoplasma mycoides group 0.12 4 4 S 1179777 Mycoplasma feriruminatoris 0.06 2 0 O 186329 Acholeplasmatales 0.06 2 0 F 2146 Acholeplasmataceae 0.03 1 0 G 2147 Acholeplasma 0.03 1 1 S 264636 Acholeplasma hippikon 0.03 1 0 G 33926 Candidatus Phytoplasma 0.03 1 0 G1 85632 16SrXII (Stolbur group) 0.03 1 0 S 59748 Candidatus Phytoplasma australiense 0.03 1 0 S1 359335 Strawberry lethal yellows phytoplasma (CPA) 0.03 1 1 S2 980422 Strawberry lethal yellows phytoplasma (CPA) str. NZSb11 0.18 6 0 O 2790996 Mycoplasmoidales 0.12 4 0 F 2895623 Metamycoplasmataceae 0.12 4 1 G 2767358 Mycoplasmopsis 0.06 2 2 S 55603 Mycoplasmopsis caviae 0.03 1 1 S 33923 Mycoplasmopsis felis 0.06 2 0 F 2790998 Mycoplasmoidaceae 0.06 2 2 G 2995234 Mycoplasmoides 1.99 65 0 D2 1798711 Cyanobacteriota/Melainabacteria group 1.99 65 4 P 1117 Cyanobacteriota 1.87 61 11 C 3028117 Cyanophyceae 1.16 38 0 C1 1301283 Oscillatoriophycideae 0.95 31 0 O 1150 Oscillatoriales 0.77 25 0 F 2934961 Sirenicapillariaceae 0.77 25 0 G 2596745 Limnospira 0.77 25 0 S 147322 Limnospira indica 0.77 25 25 S1 2760438 Limnospira indica BM01 0.09 3 0 F 1892252 Microcoleaceae 0.06 2 1 G 54304 Planktothrix 0.03 1 0 S 1160 Planktothrix agardhii 0.03 1 1 S1 388467 Planktothrix agardhii NIVA-CYA 126/8 0.03 1 0 G 1492710 Oxynema 0.03 1 0 S 2874213 Oxynema aestuarii 0.03 1 1 S1 2064643 Oxynema aestuarii AP17 0.09 3 0 F 1892254 Oscillatoriaceae 0.09 3 0 G 1198 Phormidium 0.09 3 0 S 2974039 Phormidium yuhuli 0.09 3 3 S1 2940671 Phormidium yuhuli AB48 0.21 7 0 O 1118 Chroococcales 0.21 7 0 F 1890449 Microcystaceae 0.21 7 0 G 1125 Microcystis 0.21 7 0 G1 2643300 unclassified Microcystis 0.21 7 7 S 1967666 Microcystis sp. MC19 0.12 4 0 O 1161 Nostocales 0.06 2 0 F 2661849 Calotrichaceae 0.06 2 0 G 1186 Calothrix 0.06 2 0 G1 2619626 unclassified Calothrix 0.06 2 2 S 1337936 Calothrix sp. 336/3 0.03 1 0 F 1162 Nostocaceae 0.03 1 0 G 1163 Anabaena 0.03 1 0 G1 2619674 unclassified Anabaena 0.03 1 1 S 2490939 Anabaena sp. YBS01 0.03 1 0 F 1185 Rivulariaceae 0.03 1 0 G 373984 Rivularia 0.03 1 0 G1 2676603 unclassified Rivularia (in: cyanobacteria) 0.03 1 1 S 373994 Rivularia sp. PCC 7116 0.12 4 4 O 307595 Gloeobacterales 0.06 2 0 O 1890424 Synechococcales 0.06 2 0 F 1890426 Synechococcaceae 0.06 2 0 G 1129 Synechococcus 0.06 2 0 G1 2626047 unclassified Synechococcus 0.06 2 2 S 321327 Synechococcus sp. JA-3-3Ab 0.06 2 0 O 3039985 Nodosilineales 0.06 2 0 F 3039986 Nodosilineaceae 0.06 2 0 G 170610 Halomicronema 0.06 2 0 S 1209493 Halomicronema hongdechloris 0.06 2 2 S1 1641165 Halomicronema hongdechloris C2206 0.15 5 0 P 200795 Chloroflexota 0.09 3 0 C 388447 Ktedonobacteria 0.09 3 0 O 388448 Ktedonobacterales 0.09 3 0 F 2692416 Ktedonosporobacteraceae 0.09 3 0 G 2692417 Ktedonosporobacter 0.09 3 3 S 2509675 Ktedonosporobacter rubrisoli 0.03 1 0 C 301297 Dehalococcoidia 0.03 1 0 O 1202465 Dehalococcoidales 0.03 1 0 F 1202464 Dehalococcoidaceae 0.03 1 1 G 670486 Dehalogenimonas 0.03 1 0 C 1382928 Ardenticatenia 0.03 1 0 O 3085098 Candidatus Promineifilales 0.03 1 0 F 3085097 Candidatus Promineifilaceae 0.03 1 0 G 1988031 Candidatus Promineifilum 0.03 1 1 S 1806508 Candidatus Promineifilum breve 0.09 3 0 P 67819 Armatimonadota 0.09 3 0 C 1077257 Chthonomonadia 0.09 3 0 O 1077263 Chthonomonadales 0.09 3 0 F 1077264 Chthonomonadaceae 0.09 3 0 G 1077265 Chthonomonas 0.09 3 0 S 454171 Chthonomonas calidirosea 0.09 3 3 S1 1303518 Chthonomonas calidirosea T49 0.03 1 0 P 1297 Deinococcota 0.03 1 0 C 188787 Deinococci 0.03 1 0 O 118964 Deinococcales 0.03 1 0 F 183710 Deinococcaceae 0.03 1 1 G 1298 Deinococcus 1.72 56 0 P 32066 Fusobacteriota 1.72 56 0 C 203490 Fusobacteriia 1.72 56 2 O 203491 Fusobacteriales 1.41 46 0 F 1129771 Leptotrichiaceae 1.41 46 19 G 32067 Leptotrichia 0.21 7 7 S 157687 Leptotrichia wadei 0.21 7 0 G1 2633022 unclassified Leptotrichia 0.12 4 4 S 712362 Leptotrichia sp. oral taxon 221 0.03 1 1 S 712357 Leptotrichia sp. oral taxon 212 0.03 1 1 S 712361 Leptotrichia sp. oral taxon 218 0.03 1 1 S 1785996 Leptotrichia sp. oral taxon 847 0.18 6 6 S 157691 Leptotrichia shahii 0.18 6 6 S 554406 Leptotrichia hongkongensis 0.03 1 1 S 157688 Leptotrichia hofstadii 0.25 8 0 F 203492 Fusobacteriaceae 0.25 8 4 G 848 Fusobacterium 0.06 2 2 S 76857 Fusobacterium polymorphum 0.03 1 1 S 76859 Fusobacterium animalis 0.03 1 0 S 155615 Fusobacterium vincentii 0.03 1 1 S1 1307427 Fusobacterium vincentii ChDC F8 1.38 45 0 D1 1783270 FCB group 1.38 45 0 D2 68336 Bacteroidota/Chlorobiota group 1.26 41 2 P 976 Bacteroidota 0.67 22 0 C 117743 Flavobacteriia 0.67 22 3 O 200644 Flavobacteriales 0.49 16 1 F 49546 Flavobacteriaceae 0.40 13 2 G 1016 Capnocytophaga 0.18 6 6 S 1017 Capnocytophaga gingivalis 0.06 2 2 S 327575 Capnocytophaga leadbetteri 0.03 1 1 S 1019 Capnocytophaga sputigena 0.03 1 1 S 45243 Capnocytophaga haemolytica 0.03 1 1 S 2708117 Capnocytophaga endodontalis 0.03 1 0 G 237 Flavobacterium 0.03 1 1 S 2704140 Flavobacterium bizetiae 0.03 1 0 G 286104 Winogradskyella 0.03 1 1 S 2686077 Winogradskyella forsetii 0.06 2 0 F 2762318 Weeksellaceae 0.06 2 1 F1 2782232 Chryseobacterium group 0.03 1 1 G 59732 Chryseobacterium 0.03 1 0 O1 313602 Flavobacteriales incertae sedis 0.03 1 0 G 336809 Candidatus Karelsulcia 0.03 1 1 S 336810 Candidatus Karelsulcia muelleri 0.43 14 0 C 200643 Bacteroidia 0.40 13 0 O 171549 Bacteroidales 0.21 7 1 F 171552 Prevotellaceae 0.09 3 0 G 838 Prevotella 0.03 1 1 S 28128 Prevotella corporis 0.03 1 1 S 28132 Prevotella melaninogenica 0.03 1 1 S 28133 Prevotella nigrescens 0.09 3 0 G 2884814 Pseudoprevotella 0.09 3 3 S 2133944 Pseudoprevotella muciniphila 0.06 2 0 F 815 Bacteroidaceae 0.06 2 0 G 816 Bacteroides 0.03 1 0 G1 139043 environmental samples 0.03 1 1 S 162156 uncultured Bacteroides sp. 0.03 1 1 S 817 Bacteroides fragilis 0.06 2 0 F 2005525 Tannerellaceae 0.06 2 1 G 195950 Tannerella 0.03 1 1 S 712710 Tannerella serpentiformis 0.03 1 0 F 171551 Porphyromonadaceae 0.03 1 0 G 836 Porphyromonas 0.03 1 0 G1 2645799 unclassified Porphyromonas 0.03 1 1 S 712435 Porphyromonas sp. oral taxon 275 0.03 1 0 F 2760872 Tenuifilaceae 0.03 1 0 G 2760873 Tenuifilum 0.03 1 1 S 2590900 Tenuifilum thalassicum 0.03 1 0 O 1970189 Marinilabiliales 0.03 1 0 F 1573805 Marinifilaceae 0.03 1 0 G 866673 Marinifilum 0.03 1 0 G1 866674 environmental samples 0.03 1 1 S 1127472 uncultured Marinifilum sp. 0.09 3 0 C 768503 Cytophagia 0.09 3 0 O 768507 Cytophagales 0.06 2 0 F 89373 Cytophagaceae 0.06 2 0 G 107 Spirosoma 0.06 2 2 S 2666025 Spirosoma endbachense 0.03 1 0 F 1853234 Persicobacteraceae 0.03 1 0 G 1434007 Fulvitalea 0.03 1 1 S 1182444 Fulvitalea axinellae 0.09 3 0 P 1090 Chlorobiota 0.09 3 0 C 191410 Chlorobiia 0.09 3 0 O 191411 Chlorobiales 0.09 3 0 F 2968741 Chloroherpetonaceae 0.09 3 0 G 100715 Chloroherpeton 0.09 3 0 S 100716 Chloroherpeton thalassium 0.09 3 3 S1 517418 Chloroherpeton thalassium ATCC 35110 0.03 1 0 P 1853220 Rhodothermota 0.03 1 0 C 1853222 Rhodothermia 0.03 1 1 O 1853224 Rhodothermales 1.07 35 4 P 200940 Thermodesulfobacteriota 0.74 24 0 C 3031651 Desulfuromonadia 0.74 24 1 O 69541 Desulfuromonadales 0.70 23 0 F 213421 Desulfuromonadaceae 0.70 23 23 G 890 Desulfuromonas 0.12 4 0 C 3031449 Desulfovibrionia 0.12 4 0 O 213115 Desulfovibrionales 0.12 4 1 F 194924 Desulfovibrionaceae 0.03 1 1 G 872 Desulfovibrio 0.03 1 0 G 41707 Lawsonia 0.03 1 1 S 29546 Lawsonia intracellularis 0.03 1 0 G 2910978 Megalodesulfovibrio 0.03 1 0 S 879 Megalodesulfovibrio gigas 0.03 1 1 S1 1121448 Megalodesulfovibrio gigas DSM 1382 = ATCC 19364 0.03 1 0 C 67799 Thermodesulfobacteria 0.03 1 0 O 188710 Thermodesulfobacteriales 0.03 1 0 F 188711 Thermodesulfobacteriaceae 0.03 1 0 G 2033601 Thermosulfuriphilus 0.03 1 1 S 1936021 Thermosulfuriphilus ammonigenes 0.03 1 0 C 3024408 Syntrophobacteria 0.03 1 0 O 213462 Syntrophobacterales 0.03 1 1 F 213465 Syntrophobacteraceae 0.03 1 0 C 3031646 Desulfarculia 0.03 1 0 O 453227 Desulfarculales 0.03 1 0 F 453228 Desulfarculaceae 0.03 1 0 G 453229 Desulfarculus 0.03 1 0 S 453230 Desulfarculus baarsii 0.03 1 1 S1 644282 Desulfarculus baarsii DSM 2075 0.58 19 0 D1 1783257 PVC group 0.28 9 0 P 204428 Chlamydiota 0.28 9 8 C 204429 Chlamydiia 0.03 1 0 O 51291 Chlamydiales 0.03 1 1 F 809 Chlamydiaceae 0.18 6 0 P 74201 Verrucomicrobiota 0.09 3 0 C 203494 Verrucomicrobiia 0.09 3 0 O 48461 Verrucomicrobiales 0.09 3 0 F 203557 Verrucomicrobiaceae 0.09 3 0 G 2735 Verrucomicrobium 0.09 3 0 G1 2625155 unclassified Verrucomicrobium 0.09 3 3 S 1882831 Verrucomicrobium sp. GAS474 0.06 2 0 P1 326457 Verrucomicrobiota incertae sedis 0.06 2 0 G 1541670 Methylacidimicrobium 0.06 2 2 G1 2730358 unclassified Methylacidimicrobium 0.03 1 0 C 1955630 Methylacidiphilae 0.03 1 0 O 717963 Methylacidiphilales 0.03 1 0 F 717964 Methylacidiphilaceae 0.03 1 1 G 511745 Methylacidiphilum (ex Ratnadevi et al. 2023) 0.12 4 0 P 203682 Planctomycetota 0.12 4 2 C 203683 Planctomycetia 0.06 2 0 O 112 Planctomycetales 0.06 2 0 F 126 Planctomycetaceae 0.06 2 1 G 1649453 Gimesia 0.03 1 1 S 2527964 Gimesia aquarii 0.25 8 0 P 29547 Campylobacterota 0.25 8 0 C 3031852 Epsilonproteobacteria 0.25 8 0 O 213849 Campylobacterales 0.12 4 0 F 2932623 Sulfurospirillaceae 0.12 4 0 G 57665 Sulfurospirillum 0.12 4 0 S 66821 Sulfurospirillum multivorans 0.12 4 4 S1 1150621 Sulfurospirillum multivorans DSM 12446 0.09 3 0 F 72294 Campylobacteraceae 0.09 3 2 G 194 Campylobacter 0.03 1 1 S 824 Campylobacter gracilis 0.03 1 0 F 72293 Helicobacteraceae 0.03 1 1 G 209 Helicobacter 0.09 3 0 D1 2323 Bacteria incertae sedis 0.09 3 0 D2 1783234 Bacteria candidate phyla 0.06 2 0 D3 95901 Candidatus Dependentiae 0.06 2 0 C 2497643 Candidatus Babeliae 0.06 2 0 O 2497644 Candidatus Babeliales 0.06 2 0 F 2953756 Candidatus Chromulinivoraceae 0.06 2 0 G 2953757 Candidatus Chromulinivorax 0.06 2 2 S 2066483 Candidatus Chromulinivorax destructor 0.03 1 0 P 221235 Candidatus Absconditabacteria 0.03 1 0 O 2900568 Candidatus Absconditabacterales 0.03 1 0 F 2900569 Candidatus Absconditicoccaceae 0.03 1 0 G 2900570 Candidatus Absconditicoccus 0.03 1 1 S 2735562 Candidatus Absconditicoccus praedator 0.09 3 0 P 200783 Aquificota 0.09 3 0 C 187857 Aquificia 0.09 3 0 O 32069 Aquificales 0.09 3 0 F 224027 Hydrogenothermaceae 0.09 3 3 G 212790 Sulfurihydrogenibium 0.06 2 0 P 57723 Acidobacteriota 0.03 1 0 C 204432 Terriglobia 0.03 1 0 O 332160 Bryobacterales 0.03 1 0 F 1962910 Bryobacteraceae 0.03 1 0 G 1649475 Paludibaculum 0.03 1 0 G1 1765019 environmental samples 0.03 1 1 S 1765020 uncultured Paludibaculum sp. 0.03 1 0 C 533205 Holophagae 0.03 1 0 O 574975 Holophagales 0.03 1 1 F 574976 Holophagaceae 0.03 1 0 D1 2498710 Caldisericota/Cryosericota group 0.03 1 0 P 67814 Caldisericota 0.03 1 0 C 693071 Caldisericia 0.03 1 0 O 693072 Caldisericales 0.03 1 0 F 693073 Caldisericaceae 0.03 1 0 G 693074 Caldisericum 0.03 1 0 S 693075 Caldisericum exile 0.03 1 1 S1 511051 Caldisericum exile AZM16c01 0.03 1 0 P 2138240 Coprothermobacterota 0.03 1 0 C 2138243 Coprothermobacteria 0.03 1 0 O 2138246 Coprothermobacterales 0.03 1 0 F 2138247 Coprothermobacteraceae 0.03 1 0 G 68335 Coprothermobacter 0.03 1 0 S 35786 Coprothermobacter proteolyticus 0.03 1 1 S1 309798 Coprothermobacter proteolyticus DSM 5265 0.03 1 0 P 203691 Spirochaetota 0.03 1 0 C 203692 Spirochaetia 0.03 1 0 O 1643688 Leptospirales 0.03 1 0 F 170 Leptospiraceae 0.03 1 1 G 171 Leptospira 0.03 1 0 P 508458 Synergistota 0.03 1 0 C 649775 Synergistia 0.03 1 0 O 649776 Synergistales 0.03 1 0 F 649777 Synergistaceae 0.03 1 0 G 81411 Aminomonas 0.03 1 0 S 81412 Aminomonas paucivorans 0.03 1 1 S1 584708 Aminomonas paucivorans DSM 12260 0.09 3 0 D 10239 Viruses 0.06 2 0 C 2840056 Naldaviricetes 0.06 2 0 O 2840070 Lefavirales 0.06 2 0 F 10442 Baculoviridae 0.06 2 0 G 558017 Betabaculovirus 0.06 2 0 S 3051997 Betabaculovirus chofumiferanae 0.06 2 2 S1 56947 Choristoneura fumiferana granulovirus 0.03 1 0 D1 2731341 Duplodnaviria 0.03 1 0 K 2731360 Heunggongvirae 0.03 1 0 P 2731618 Uroviricota 0.03 1 0 C 2731619 Caudoviricetes 0.03 1 0 F 2946170 Straboviridae 0.03 1 0 F1 1198136 Tevenvirinae 0.03 1 0 G 10663 Tequatrovirus 0.03 1 0 S 2844199 Tequatrovirus gee4507 0.03 1 1 S1 2502306 Escherichia phage vB_EcoM_G4507