7.86 638 638 U 0 unclassified 92.14 7479 9 R 1 root 91.97 7465 0 R1 131567 cellular organisms 91.97 7465 1358 D 2 Bacteria 54.02 4385 60 P 1224 Pseudomonadota 43.40 3523 220 C 1236 Gammaproteobacteria 31.60 2565 158 O 91347 Enterobacterales 26.80 2175 293 F 543 Enterobacteriaceae 12.18 989 19 G 561 Escherichia 11.78 956 845 S 562 Escherichia coli 0.25 20 20 S1 2079157 Escherichia coli O2:H1 0.21 17 17 S1 316435 Escherichia coli Nissle 1917 0.20 16 2 S1 83334 Escherichia coli O157:H7 0.09 7 7 S2 155864 Escherichia coli O157:H7 str. EDL933 0.05 4 4 S2 1328859 Escherichia coli O157:H7 str. SS17 0.04 3 3 S2 502346 Escherichia coli O157:H7 str. TW14588 0.16 13 13 S1 2874053 Escherichia coli O25:H1 0.15 12 12 S1 1322345 Escherichia coli ATCC 25922 0.12 10 10 S1 655817 Escherichia coli ABU 83972 0.11 9 9 S1 1446600 Escherichia coli O15:H18 0.10 8 8 S1 331112 Escherichia coli HS 0.05 4 4 S1 244320 Escherichia coli O55:H7 0.01 1 0 S1 1038927 Escherichia coli O104:H4 0.01 1 1 S2 1134782 Escherichia coli O104:H4 str. 2009EL-2050 0.01 1 1 S1 376725 Escherichia coli O103:H2 0.09 7 7 S 208962 Escherichia albertii 0.09 7 7 S 1499973 Escherichia marmotae 4.10 333 6 G 590 Salmonella 3.91 317 49 S 28901 Salmonella enterica 3.30 268 19 S1 59201 Salmonella enterica subsp. enterica 1.06 86 86 S2 2583588 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- 0.65 53 0 S2 58096 Salmonella enterica subsp. enterica serovar Bareilly 0.60 49 49 S3 1182177 Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000752 0.05 4 4 S3 1182172 Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000661 0.42 34 34 S2 600 Salmonella enterica subsp. enterica serovar Thompson 0.31 25 2 S2 611 Salmonella enterica subsp. enterica serovar Heidelberg 0.27 22 22 S3 1124936 Salmonella enterica subsp. enterica serovar Heidelberg str. 41578 0.01 1 1 S3 1160717 Salmonella enterica subsp. enterica serovar Heidelberg str. B182 0.26 21 21 S2 2579247 Salmonella enterica subsp. enterica serovar Rough O:-:- 0.09 7 7 S2 149539 Salmonella enterica subsp. enterica serovar Enteritidis 0.07 6 6 S2 90371 Salmonella enterica subsp. enterica serovar Typhimurium 0.06 5 5 S2 90370 Salmonella enterica subsp. enterica serovar Typhi 0.04 3 3 S2 90105 Salmonella enterica subsp. enterica serovar Saintpaul 0.04 3 3 S2 58712 Salmonella enterica subsp. enterica serovar Anatum 0.02 2 0 S2 108619 Salmonella enterica subsp. enterica serovar Newport 0.02 2 2 S3 858307 Salmonella enterica subsp. enterica serovar Newport str. CVM N1543 0.01 1 0 S2 57046 Salmonella enterica subsp. enterica serovar Paratyphi C 0.01 1 1 S3 476213 Salmonella enterica subsp. enterica serovar Paratyphi C str. RKS4594 0.01 1 1 S2 192954 Salmonella enterica subsp. enterica serovar Mbandaka 0.01 1 1 S2 192955 Salmonella enterica subsp. enterica serovar Kentucky 0.01 1 0 S2 1242084 Salmonella enterica subsp. enterica serovar Krefeld 0.01 1 1 S3 1242106 Salmonella enterica subsp. enterica serovar Krefeld str. SA20030536 0.12 10 0 S 54736 Salmonella bongori 0.12 10 10 S1 1299282 Salmonella bongori CFSAN000510 2.82 229 1 G 547 Enterobacter 2.70 219 0 G1 354276 Enterobacter cloacae complex 1.61 131 131 S 299767 Enterobacter ludwigii 0.80 65 39 S 158836 Enterobacter hormaechei 0.32 26 26 S1 1296536 Enterobacter hormaechei subsp. xiangfangensis 0.12 10 10 S 61645 Enterobacter asburiae 0.09 7 7 S 208224 Enterobacter kobei 0.06 5 0 S 550 Enterobacter cloacae 0.06 5 5 S1 336306 Enterobacter cloacae subsp. cloacae 0.01 1 1 S 1812935 Enterobacter roggenkampii 0.11 9 9 S 881260 Enterobacter bugandensis 2.01 163 0 F1 2890311 Klebsiella/Raoultella group 1.98 161 5 G 570 Klebsiella 1.56 127 102 S 573 Klebsiella pneumoniae 0.26 21 21 S1 72407 Klebsiella pneumoniae subsp. pneumoniae 0.05 4 4 S1 1049565 Klebsiella pneumoniae KCTC 2242 0.10 8 8 S 548 Klebsiella aerogenes 0.09 7 7 S 244366 Klebsiella variicola 0.07 6 6 S 1134687 Klebsiella michiganensis 0.06 5 1 S 1463165 Klebsiella quasipneumoniae 0.05 4 4 S1 1667327 Klebsiella quasipneumoniae subsp. quasipneumoniae 0.02 2 0 G1 2608929 unclassified Klebsiella 0.02 2 2 S 2829835 Klebsiella sp. P1954 0.01 1 1 S 2153354 Klebsiella huaxiensis 0.02 2 0 G 160674 Raoultella 0.01 1 1 S 54291 Raoultella ornithinolytica 0.01 1 0 G1 2627600 unclassified Raoultella 0.01 1 1 S 2799495 Raoultella sp. XY-1 0.59 48 7 F1 36866 unclassified Enterobacteriaceae 0.25 20 20 S 2675793 Enterobacteriaceae endosymbiont of Plateumaris braccata 0.25 20 20 S 2675787 Enterobacteriaceae endosymbiont of Donacia tomentosa 0.01 1 1 S 2675780 Enterobacteriaceae endosymbiont of Donacia piscatrix 0.36 29 1 G 544 Citrobacter 0.28 23 0 G1 1344959 Citrobacter freundii complex 0.11 9 9 S 67828 Citrobacter gillenii 0.06 5 5 S 546 Citrobacter freundii 0.06 5 5 S 1639133 Citrobacter portucalensis 0.02 2 2 S 67827 Citrobacter werkmanii 0.02 2 0 G2 2816438 unclassified Citrobacter freundii complex 0.02 2 2 S 1686385 Citrobacter sp. BIDMC108 0.05 4 0 S 35703 Citrobacter amalonaticus 0.05 4 4 S1 1261127 Citrobacter amalonaticus Y19 0.01 1 1 S 2971264 Citrobacter enshiensis 0.33 27 0 G 620 Shigella 0.33 27 27 S 623 Shigella flexneri 0.27 22 0 F1 191675 Enterobacteriaceae incertae sedis 0.27 22 0 F2 84563 ant, tsetse, mealybug, aphid, etc. endosymbionts 0.14 11 0 F3 146507 aphid secondary symbionts 0.09 7 7 S 1199245 secondary endosymbiont of Ctenarytaina eucalypti 0.02 2 2 G 568987 Candidatus Hamiltonella 0.02 2 0 G 568988 Candidatus Regiella 0.02 2 0 G1 3077955 unclassified Candidatus Regiella 0.02 2 2 S 3077956 Candidatus Regiella endosymbiont of Tuberolachnus salignus 0.10 8 0 F3 84564 ant endosymbionts 0.06 5 1 G 203804 Candidatus Blochmanniella 0.05 4 0 G1 711328 unclassified Candidatus Blochmanniella 0.05 4 4 S 1505596 Blochmannia endosymbiont of Polyrhachis (Hedomyrma) turneri 0.04 3 0 G 1699619 Candidatus Westeberhardia 0.04 3 3 S 1594731 Candidatus Westeberhardia cardiocondylae 0.04 3 0 G 1302410 Candidatus Annandia 0.04 3 3 S 1302411 Candidatus Annandia adelgestsuga 0.18 15 0 G 1330547 Kosakonia 0.18 15 15 S 208223 Kosakonia cowanii 0.09 7 0 G 2815296 Jejubacter 0.09 7 7 S 2579935 Jejubacter calystegiae 0.05 4 0 G 1330545 Lelliottia 0.04 3 3 S 61646 Lelliottia amnigena 0.01 1 0 G1 2642424 unclassified Lelliottia 0.01 1 1 S 3110110 Lelliottia sp. JS-SCA-14 0.04 3 0 G 409304 Candidatus Ishikawella 0.04 3 0 S 168169 Candidatus Ishikawella capsulata 0.04 3 3 S1 476281 Candidatus Ishikawaella capsulata Mpkobe 0.02 2 0 G 702 Plesiomonas 0.02 2 2 S 703 Plesiomonas shigelloides 0.02 2 0 G 1335483 Shimwellia 0.02 2 2 S 563 Shimwellia blattae 0.02 2 2 G 158483 Cedecea 0.02 2 0 G 1177214 Candidatus Profftia 0.02 2 2 S 1987921 Candidatus Profftia lariciata 0.01 1 0 G 1504576 Pseudocitrobacter 0.01 1 1 S 2891570 Pseudocitrobacter corydidari 0.01 1 0 G 1048757 Candidatus Moranella 0.01 1 1 S 1048758 Candidatus Moranella endobia 0.01 1 0 G 447792 Phytobacter 0.01 1 1 S 1972431 Phytobacter ursingii 0.01 1 1 G 401618 Candidatus Riesia 0.01 1 0 G 83654 Leclercia 0.01 1 1 S 2815358 Leclercia pneumoniae 0.91 74 0 F 2812006 Bruguierivoracaceae 0.91 74 0 G 84565 Sodalis 0.75 61 61 S 2697027 Sodalis ligni 0.12 10 0 S 1486991 Candidatus Sodalis pierantonius 0.12 10 10 S1 2342 Candidatus Sodalis pierantonius str. SOPE 0.02 2 2 S 1239307 Sodalis praecaptivus 0.01 1 0 G1 2636512 unclassified Sodalis 0.01 1 1 S 1929246 Sodalis endosymbiont of Henestaris halophilus 0.57 46 1 F 1903409 Erwiniaceae 0.31 25 0 G 551 Erwinia 0.23 19 19 S 1922217 Candidatus Erwinia haradaeae 0.07 6 0 G1 2622719 unclassified Erwinia 0.07 6 6 S 215689 Erwinia sp. Ejp617 0.15 12 2 G 53335 Pantoea 0.07 6 6 S 1235990 Candidatus Pantoea carbekii 0.05 4 4 S 59814 Pantoea dispersa 0.10 8 0 G 32199 Buchnera 0.10 8 4 S 9 Buchnera aphidicola 0.04 3 3 S1 1241860 Buchnera aphidicola (Hyperomyzus lactucae) 0.01 1 1 S1 2315800 Buchnera aphidicola (Stegophylla sp.) 0.55 45 0 F 1903411 Yersiniaceae 0.39 32 0 G 613 Serratia 0.25 20 20 S 138074 Serratia symbiotica 0.07 6 6 S 614 Serratia liquefaciens 0.05 4 4 S 61652 Serratia rubidaea 0.02 2 0 G1 2647522 unclassified Serratia (in: enterobacteria) 0.02 2 2 S 2785630 Serratia sp. CMO1 0.14 11 0 G 629 Yersinia 0.12 10 0 G1 1649845 Yersinia pseudotuberculosis complex 0.12 10 1 S 632 Yersinia pestis 0.06 5 5 S1 748678 Yersinia pestis str. Pestoides B 0.05 4 4 S1 649716 Yersinia pestis Pestoides G 0.01 1 1 S 935293 Yersinia entomophaga 0.02 2 2 G 1927833 Candidatus Fukatsuia 0.41 33 7 F 1903414 Morganellaceae 0.11 9 0 G 637 Arsenophonus 0.05 4 0 G1 2627083 unclassified Arsenophonus 0.02 2 2 S 1231049 Arsenophonus endosymbiont of Aphis craccivora 0.02 2 2 S 3066235 Arsenophonus endosymbiont of Crataerina pallida 0.04 3 3 S 638 Arsenophonus nasoniae 0.02 2 2 S 634113 Candidatus Arsenophonus lipoptenae 0.07 6 0 G 581 Morganella 0.07 6 6 S 582 Morganella morganii 0.07 6 0 G 583 Proteus 0.07 6 6 S 584 Proteus mirabilis 0.05 4 0 G 626 Xenorhabdus 0.04 3 0 S 40577 Xenorhabdus poinarii 0.04 3 3 S1 1354304 Xenorhabdus poinarii G6 0.01 1 0 S 40576 Xenorhabdus bovienii 0.01 1 1 S1 406818 Xenorhabdus bovienii SS-2004 0.01 1 0 G 586 Providencia 0.01 1 0 G1 2633465 unclassified Providencia 0.01 1 1 S 2939731 Providencia sp. PROV188 0.28 23 7 F 1903410 Pectobacteriaceae 0.10 8 3 G 204037 Dickeya 0.02 2 0 S 204038 Dickeya dadantii 0.02 2 2 S1 1224149 Dickeya dadantii NCPPB 3537 0.02 2 2 S 1089444 Dickeya solani 0.01 1 1 S 1778540 Dickeya fangzhongdai 0.09 7 0 G 122277 Pectobacterium 0.06 5 4 S 1905730 Pectobacterium parmentieri 0.01 1 1 S1 561231 Pectobacterium parmentieri WPP163 0.01 1 1 S 2778550 Pectobacterium parvum 0.01 1 1 S 180957 Pectobacterium brasiliense 0.01 1 0 G 71655 Brenneria 0.01 1 1 S 55213 Brenneria rubrifaciens 0.07 6 0 F 1903412 Hafniaceae 0.07 6 5 G 635 Edwardsiella 0.01 1 1 S 636 Edwardsiella tarda 0.05 4 0 F 3120698 Gallaecimonadaceae 0.05 4 0 G 745410 Gallaecimonas 0.04 3 3 S 3029055 Gallaecimonas kandeliae 0.01 1 1 S 2291597 Gallaecimonas mangrovi 0.01 1 0 F 1903416 Budviciaceae 0.01 1 0 G 2172100 Limnobaculum 0.01 1 1 S 2498113 Limnobaculum zhutongyuii 1.84 149 0 O 135614 Lysobacterales 1.79 145 4 F 32033 Lysobacteraceae 1.65 134 0 G 338 Xanthomonas 1.65 134 134 S 29447 Xanthomonas albilineans 0.07 6 5 G 40323 Stenotrophomonas 0.01 1 1 G1 995085 Stenotrophomonas maltophilia group 0.01 1 1 G 2370 Xylella 0.05 4 0 F 1775411 Rhodanobacteraceae 0.02 2 2 G 231454 Dyella 0.01 1 0 G 242605 Luteibacter 0.01 1 1 S 564369 Luteibacter anthropi 0.01 1 0 G 2233801 Ahniella 0.01 1 1 S 2021234 Ahniella affigens 1.17 95 0 O 2887326 Moraxellales 1.17 95 6 F 468 Moraxellaceae 0.97 79 20 G 469 Acinetobacter 0.63 51 2 G1 909768 Acinetobacter calcoaceticus/baumannii complex 0.46 37 37 S 470 Acinetobacter baumannii 0.15 12 11 S 48296 Acinetobacter pittii 0.01 1 1 S1 871585 Acinetobacter pittii PHEA-2 0.02 2 2 S 40214 Acinetobacter johnsonii 0.02 2 2 S 202956 Acinetobacter towneri 0.02 2 1 G1 196816 unclassified Acinetobacter 0.01 1 1 S 2714110 Acinetobacter sp. Marseille-Q1620 0.01 1 1 S 487316 Acinetobacter soli 0.01 1 1 S 106648 Acinetobacter bereziniae 0.10 8 4 G 475 Moraxella 0.02 2 2 S 2904120 Moraxella nasibovis 0.01 1 0 G1 2685852 unclassified Moraxella 0.01 1 1 S 2904123 Moraxella sp. ZY210820 0.01 1 1 S 2904119 Moraxella haemolytica 0.02 2 2 G 497 Psychrobacter 1.03 84 0 O 135623 Vibrionales 1.03 84 3 F 641 Vibrionaceae 0.87 71 3 G 662 Vibrio 0.42 34 0 S 52443 Vibrio tapetis 0.42 34 34 S1 1671868 Vibrio tapetis subsp. tapetis 0.18 15 15 S 666 Vibrio cholerae 0.09 7 0 G1 2614977 unclassified Vibrio 0.04 3 3 S 2661921 Vibrio sp. THAF191c 0.02 2 2 S 2589990 Vibrio sp. Scap24 0.01 1 1 S 2163016 Vibrio sp. dhg 0.01 1 1 S 2942997 Vibrio sp. J383 0.06 5 0 G1 717610 Vibrio harveyi group 0.05 4 4 S 669 Vibrio harveyi 0.01 1 1 S 670 Vibrio parahaemolyticus 0.06 5 5 S 2572923 Vibrio taketomensis 0.01 1 0 S 672 Vibrio vulnificus 0.01 1 1 S1 914127 Vibrio vulnificus MO6-24/O 0.01 1 1 S 104609 Vibrio penaeicida 0.12 10 1 G 657 Photobacterium 0.06 5 2 S 553611 Photobacterium leiognathi 0.04 3 3 S1 48408 Photobacterium leiognathi subsp. mandapamensis 0.05 4 0 S 38293 Photobacterium damselae 0.05 4 4 S1 38294 Photobacterium damselae subsp. piscicida 0.94 76 0 O 135625 Pasteurellales 0.94 76 3 F 712 Pasteurellaceae 0.76 62 1 G 713 Actinobacillus 0.74 60 0 S 718 Actinobacillus equuli 0.74 60 60 S1 202948 Actinobacillus equuli subsp. haemolyticus 0.01 1 0 S 715 Actinobacillus pleuropneumoniae 0.01 1 0 S1 754344 Actinobacillus pleuropneumoniae serovar 6 0.01 1 1 S2 754256 Actinobacillus pleuropneumoniae serovar 6 str. Femo 0.07 6 0 G 724 Haemophilus 0.06 5 5 S 729 Haemophilus parainfluenzae 0.01 1 1 S 727 Haemophilus influenzae 0.02 2 0 G 745 Pasteurella 0.02 2 1 S 747 Pasteurella multocida 0.01 1 1 S1 115545 Pasteurella multocida subsp. septica 0.01 1 0 G 2899790 Mergibacter 0.01 1 1 S 221402 Mergibacter septicus 0.01 1 0 G 1249016 Otariodibacter 0.01 1 1 S 1032623 Otariodibacter oris 0.01 1 0 G 214906 Histophilus 0.01 1 1 S 731 Histophilus somni 0.92 75 0 O 135622 Alteromonadales 0.58 47 0 F 267888 Pseudoalteromonadaceae 0.39 32 0 G 53246 Pseudoalteromonas 0.39 32 0 G1 194690 unclassified Pseudoalteromonas 0.39 32 32 S 649161 Pseudoalteromonas sp. 3J6 0.18 15 0 G 2834759 Flocculibacter 0.18 15 15 S 2744479 Flocculibacter collagenilyticus 0.18 15 0 F 267890 Shewanellaceae 0.18 15 6 G 22 Shewanella 0.06 5 5 S 62322 Shewanella baltica 0.02 2 1 G1 196818 unclassified Shewanella 0.01 1 1 S 2590015 Shewanella sp. SNU WT4 0.01 1 1 S 712036 Shewanella dokdonensis 0.01 1 1 S 2018305 Shewanella bicestrii 0.16 13 0 F 72275 Alteromonadaceae 0.12 10 0 F1 2903219 Alteromonas/Salinimonas group 0.12 10 0 G 226 Alteromonas 0.12 10 0 G1 2614992 unclassified Alteromonas 0.12 10 10 S 2267264 Alteromonas sp. RKMC-009 0.01 1 1 G 261825 Agarivorans 0.01 1 1 G 1858563 Alkalimarinus 0.01 1 0 G 2661818 Saliniradius 0.01 1 1 S 2183582 Saliniradius amylolyticus 0.92 75 0 O 135624 Aeromonadales 0.86 70 4 F 84642 Aeromonadaceae 0.53 43 1 G 642 Aeromonas 0.36 29 29 S 654 Aeromonas veronii 0.07 6 0 G1 257493 unclassified Aeromonas 0.07 6 6 S 2560029 Aeromonas sp. 2692-1 0.05 4 4 S 652 Aeromonas schubertii 0.02 2 2 S 648 Aeromonas caviae 0.01 1 1 S 645 Aeromonas salmonicida 0.27 22 0 G 225143 Oceanisphaera 0.27 22 22 S 1903694 Oceanisphaera avium 0.01 1 0 G 43947 Tolumonas 0.01 1 1 S 43948 Tolumonas auensis 0.06 5 0 F 83763 Succinivibrionaceae 0.06 5 0 G 83770 Succinivibrio 0.06 5 5 S 83771 Succinivibrio dextrinosolvens 0.91 74 0 O 72274 Pseudomonadales 0.91 74 6 F 135621 Pseudomonadaceae 0.80 65 22 G 286 Pseudomonas 0.12 10 0 G1 196821 unclassified Pseudomonas 0.05 4 4 S 2025658 Pseudomonas sp. NS1(2017) 0.01 1 1 S 2954086 Pseudomonas sp. FP2196 0.01 1 1 S 2954088 Pseudomonas sp. FP2262 0.01 1 1 S 3137451 Pseudomonas sp. G.S.17 0.01 1 1 S 2762896 Pseudomonas sp. MPDS 0.01 1 1 S 2931382 Pseudomonas sp. PIA16 0.01 1 1 S 1357074 Pseudomonas sp. LS44 0.12 10 0 G1 136841 Pseudomonas aeruginosa group 0.12 10 10 S 287 Pseudomonas aeruginosa 0.11 9 1 G1 136845 Pseudomonas putida group 0.10 8 8 S 303 Pseudomonas putida 0.09 7 7 S 437900 Pseudomonas marincola 0.02 2 2 S 2738125 Pseudomonas hefeiensis 0.02 2 0 G1 136843 Pseudomonas fluorescens group 0.02 2 0 S 47883 Pseudomonas synxantha 0.02 2 2 S1 96901 Pseudomonas synxantha BG33R 0.01 1 1 S 2219225 Pseudomonas asiatica 0.01 1 1 S 2599595 Pseudomonas eucalypticola 0.01 1 1 S 1198456 Pseudomonas guguanensis 0.02 2 0 G 1654787 Thiopseudomonas 0.02 2 2 S 1697053 Thiopseudomonas alkaliphila 0.01 1 0 G 2758906 Entomomonas 0.01 1 1 S 2785331 Entomomonas asaccharolytica 0.31 25 0 O 135613 Chromatiales 0.31 25 2 F 1046 Chromatiaceae 0.15 12 0 G 85072 Allochromatium 0.15 12 12 S 553982 Allochromatium tepidum 0.05 4 4 G 1056 Thiocapsa 0.04 3 0 G 156885 Thioflavicoccus 0.04 3 0 S 80679 Thioflavicoccus mobilis 0.04 3 3 S1 765912 Thioflavicoccus mobilis 8321 0.02 2 0 G 67575 Rheinheimera 0.02 2 0 G1 115860 unclassified Rheinheimera 0.02 2 2 S 1763998 Rheinheimera sp. F8 0.01 1 1 G 61593 Thiorhodovibrio 0.01 1 0 G 2828366 Caldichromatium 0.01 1 1 S 2699430 Caldichromatium japonicum 0.28 23 0 C1 118884 Gammaproteobacteria incertae sedis 0.25 20 0 G 1076625 Candidatus Steffania 0.25 20 20 S 1076626 Candidatus Steffania adelgidicola 0.04 3 0 G 198346 Candidatus Palibaumannia 0.04 3 3 S 186490 Candidatus Palibaumannia cicadellinicola 0.23 19 0 O 135619 Oceanospirillales 0.12 10 0 F 135620 Oceanospirillaceae 0.09 7 0 G 459520 Neptuniibacter 0.09 7 7 S 651666 Neptuniibacter halophilus 0.02 2 0 G 28253 Marinomonas 0.01 1 1 S 119864 Marinomonas mediterranea 0.01 1 1 S 2773454 Marinomonas algicola 0.01 1 0 G 75687 Neptunomonas 0.01 1 1 S 1572645 Neptunomonas phycophila 0.06 5 0 F 28256 Halomonadaceae 0.02 2 1 F1 114403 Zymobacter group 0.01 1 0 G 235572 Candidatus Portiera 0.01 1 1 S 91844 Candidatus Portiera aleyrodidarum 0.01 1 0 G 2745 Halomonas 0.01 1 0 G1 2609666 unclassified Halomonas 0.01 1 1 S 2992143 Halomonas sp. BDJS001 0.01 1 1 G 504090 Kushneria 0.01 1 0 G 3137766 Vreelandella 0.01 1 1 S 44935 Vreelandella venusta 0.01 1 0 F 224372 Alcanivoracaceae 0.01 1 0 G 3020833 Isoalcanivorax 0.01 1 0 S 1306787 Isoalcanivorax pacificus 0.01 1 1 S1 391936 Isoalcanivorax pacificus W11-5 0.01 1 0 F 224379 Hahellaceae 0.01 1 1 G 158481 Hahella 0.01 1 0 F 255527 Saccharospirillaceae 0.01 1 0 G 1445504 Gynuella 0.01 1 0 S 1445505 Gynuella sunshinyii 0.01 1 1 S1 1445510 Gynuella sunshinyii YC6258 0.01 1 0 F 2823145 Pleioneaceae 0.01 1 0 G 1502941 Pleionea 0.01 1 1 S 3070815 Pleionea litopenaei 0.09 7 0 O 135615 Cardiobacteriales 0.09 7 0 F 868 Cardiobacteriaceae 0.04 3 0 G 2717 Cardiobacterium 0.02 2 2 S 2718 Cardiobacterium hominis 0.01 1 0 G1 2648856 unclassified Cardiobacterium 0.01 1 1 S 2866573 Cardiobacterium sp. Marseille-Q4385 0.04 3 0 G 13275 Suttonella 0.04 3 0 G1 2908647 unclassified Suttonella 0.04 3 3 S 2908648 Suttonella sp. R2A3 0.01 1 0 G 869 Dichelobacter 0.01 1 1 S 870 Dichelobacter nodosus 0.09 7 0 O 1240482 Orbales 0.09 7 0 F 1240483 Orbaceae 0.09 7 0 G 2894762 Zophobihabitans 0.09 7 7 S 1635327 Zophobihabitans entericus 0.06 5 0 O 72273 Thiotrichales 0.04 3 3 F 135616 Piscirickettsiaceae 0.02 2 0 F 135617 Thiotrichaceae 0.02 2 1 G 1030 Thiothrix 0.01 1 1 S 525917 Thiothrix lacustris 0.06 5 0 O 3084968 Thiohalomonadales 0.06 5 0 F 3084969 Thiohalomonadaceae 0.06 5 0 G 2034504 Sulfurivermis 0.06 5 5 S 1972068 Sulfurivermis fontis 0.05 4 0 O 135618 Methylococcales 0.04 3 0 F 403 Methylococcaceae 0.02 2 0 G 3135206 Candidatus Methylocalor 0.02 2 2 S 3108543 Candidatus Methylocalor cossyra 0.01 1 0 G 416 Methylomonas 0.01 1 1 S 3058963 Methylomonas montana 0.01 1 0 F 1486721 Methylothermaceae 0.01 1 1 G 1486720 Methylomarinovum 0.05 4 0 O 1706369 Cellvibrionales 0.05 4 0 F 1706375 Spongiibacteraceae 0.05 4 0 G 1084558 Oceanicoccus 0.05 4 4 S 716816 Oceanicoccus sagamiensis 0.05 4 0 O 118969 Legionellales 0.04 3 0 F 444 Legionellaceae 0.04 3 0 G 445 Legionella 0.02 2 0 S 446 Legionella pneumophila 0.02 2 0 S1 91891 Legionella pneumophila subsp. pneumophila 0.02 2 2 S2 272624 Legionella pneumophila subsp. pneumophila str. Philadelphia 1 0.01 1 1 S 450 Legionella longbeachae 0.01 1 0 F 118968 Coxiellaceae 0.01 1 1 G 254245 Aquicella 0.02 2 0 O 2975284 Candidatus Comchoanobacterales 0.02 2 0 F 2975285 Candidatus Comchoanobacteraceae 0.02 2 0 G 2975286 Candidatus Comchoanobacter 0.02 2 2 S 2919598 Candidatus Comchoanobacter bicostacola 0.02 2 0 O 3060226 Steroidobacterales 0.02 2 0 F 2689614 Steroidobacteraceae 0.02 2 0 G 469322 Steroidobacter 0.02 2 2 S 465721 Steroidobacter denitrificans 0.01 1 0 O 1775403 Nevskiales 0.01 1 0 F 568386 Nevskiaceae 0.01 1 0 G 1861863 Sinimarinibacterium 0.01 1 0 G1 2621506 unclassified Sinimarinibacterium 0.01 1 1 S 2698684 Sinimarinibacterium sp. NLF-5-8 0.01 1 0 O 2887327 Kangiellales 0.01 1 0 F 1920240 Kangiellaceae 0.01 1 0 G 261963 Kangiella 0.01 1 1 S 1144748 Kangiella sediminilitoris 0.01 1 0 C1 33811 unclassified Gammaproteobacteria 0.01 1 1 S 1248727 endosymbiont of unidentified scaly snail isolate Monju 6.01 488 16 C 28211 Alphaproteobacteria 2.76 224 2 O 204457 Sphingomonadales 2.66 216 17 F 41297 Sphingomonadaceae 2.23 181 66 G 165696 Novosphingobium 1.12 91 91 S 13688 Novosphingobium capsulatum 0.18 15 15 S 2728851 Novosphingobium olei 0.11 9 3 G1 2644732 unclassified Novosphingobium 0.05 4 4 S 3079861 Novosphingobium sp. ZN18A2 0.02 2 2 S 1609758 Novosphingobium sp. P6W 0.17 14 9 G 13687 Sphingomonas 0.04 3 3 S 1541170 Sphingomonas morindae 0.01 1 0 G1 196159 unclassified Sphingomonas 0.01 1 1 S 2937788 Sphingomonas sp. SUN019 0.01 1 0 S 397260 Sphingomonas sanxanigenens 0.01 1 1 S1 1123269 Sphingomonas sanxanigenens DSM 19645 = NX02 0.01 1 1 G 165695 Sphingobium 0.01 1 0 G 165697 Sphingopyxis 0.01 1 0 G1 2614943 unclassified Sphingopyxis 0.01 1 1 S 2482763 Sphingopyxis sp. YF1 0.01 1 0 G 2709685 Parasphingorhabdus 0.01 1 0 S 394733 Parasphingorhabdus litoris 0.01 1 1 S1 1123271 Parasphingorhabdus litoris DSM 22379 0.01 1 0 G 1763827 Hankyongella 0.01 1 1 S 1763828 Hankyongella ginsenosidimutans 0.07 6 0 F 335929 Erythrobacteraceae 0.02 2 1 G 1855416 Qipengyuania 0.01 1 1 S 2867231 Qipengyuania gelatinilytica 0.01 1 0 G 1295327 Croceicoccus 0.01 1 0 G1 2629967 unclassified Croceicoccus 0.01 1 1 S 2798724 Croceicoccus sp. YJ47 0.01 1 1 G 2800681 Aurantiacibacter 0.01 1 0 F1 2800788 Erythrobacter/Porphyrobacter group 0.01 1 0 G 1111 Porphyrobacter 0.01 1 0 G1 2683265 unclassified Porphyrobacter 0.01 1 1 S 2003315 Porphyrobacter sp. CACIAM 03H1 0.01 1 0 G 2827482 Caenibius 0.01 1 0 G1 2827483 unclassified Caenibius 0.01 1 1 S 2872646 Caenibius sp. WL 1.49 121 0 O 204441 Rhodospirillales 1.43 116 0 F 2844601 Stellaceae 1.43 116 0 G 93 Stella 1.43 116 116 S 94 Stella humosa 0.04 3 0 F 433 Acetobacteraceae 0.02 2 0 G 512381 Acidisoma 0.02 2 0 G1 2634065 unclassified Acidisoma 0.02 2 2 S 3040935 Acidisoma sp. PAMC 29798 0.01 1 1 G 125216 Roseomonas 0.02 2 0 F 41295 Rhodospirillaceae 0.01 1 0 G 111830 Defluviicoccus 0.01 1 1 S 111831 Defluviicoccus vanus 0.01 1 0 G 1612157 Pararhodospirillum 0.01 1 0 S 1084 Pararhodospirillum photometricum 0.01 1 1 S1 1150469 Pararhodospirillum photometricum DSM 122 0.86 70 3 O 356 Hyphomicrobiales 0.32 26 8 F 119045 Methylobacteriaceae 0.21 17 6 G 407 Methylobacterium 0.05 4 4 G1 2615210 unclassified Methylobacterium 0.05 4 4 S 570505 Methylobacterium bullatum 0.02 2 0 S 31998 Methylobacterium radiotolerans 0.02 2 2 S1 426355 Methylobacterium radiotolerans JCM 2831 0.01 1 1 S 410 Methylobacterium organophilum 0.01 1 1 G 186650 Microvirga 0.16 13 0 F 82115 Rhizobiaceae 0.11 9 8 F1 227290 Rhizobium/Agrobacterium group 0.01 1 0 G 379 Rhizobium 0.01 1 0 S 384 Rhizobium leguminosarum 0.01 1 1 S1 386 Rhizobium leguminosarum bv. trifolii 0.02 2 2 G 34019 Liberibacter 0.02 2 0 F1 227292 Sinorhizobium/Ensifer group 0.02 2 0 G 28105 Sinorhizobium 0.02 2 0 S 382 Sinorhizobium meliloti 0.02 2 2 S1 1041157 Sinorhizobium meliloti WSM1022 0.14 11 0 F 118882 Brucellaceae 0.14 11 9 F1 2826938 Brucella/Ochrobactrum group 0.02 2 1 G 234 Brucella 0.01 1 0 S 29459 Brucella melitensis 0.01 1 0 S1 645169 Brucella melitensis bv. 2 0.01 1 1 S2 520465 Brucella melitensis bv. 2 str. 63/9 0.09 7 0 F 2813035 Parvibaculaceae 0.07 6 0 G 256616 Parvibaculum 0.07 6 0 S 256618 Parvibaculum lavamentivorans 0.07 6 6 S1 402881 Parvibaculum lavamentivorans DS-1 0.01 1 0 G 2838250 Kaustia 0.01 1 1 S 2593653 Kaustia mangrovi 0.05 4 0 F 335928 Xanthobacteraceae 0.02 2 0 G 99 Ancylobacter 0.01 1 1 S 223390 Ancylobacter polymorphus 0.01 1 1 G1 2626613 unclassified Ancylobacter 0.01 1 0 G 279 Xanthobacter 0.01 1 1 S 280 Xanthobacter autotrophicus 0.01 1 0 G 556257 Pseudolabrys 0.01 1 1 S 331696 Pseudolabrys taiwanensis 0.02 2 1 F 41294 Nitrobacteraceae 0.01 1 1 G 374 Bradyrhizobium 0.01 1 0 F 2831106 Devosiaceae 0.01 1 1 G 46913 Devosia 0.01 1 0 F 69277 Phyllobacteriaceae 0.01 1 0 G 2911176 Aquibium 0.01 1 1 S 1670800 Aquibium oceanicum 0.01 1 0 O1 119042 Hyphomicrobiales incertae sedis 0.01 1 0 G 212791 Enhydrobacter 0.01 1 0 G1 2632691 unclassified Enhydrobacter 0.01 1 1 S 1894999 Enhydrobacter sp. 0.01 1 0 F 255475 Aurantimonadaceae 0.01 1 1 G 414371 Aureimonas 0.46 37 0 O 204458 Caulobacterales 0.46 37 1 F 76892 Caulobacteraceae 0.36 29 8 G 41275 Brevundimonas 0.25 20 0 G1 2622653 unclassified Brevundimonas 0.17 14 14 S 2560058 Brevundimonas sp. Bb-A 0.07 6 6 S 2591463 Brevundimonas sp. M20 0.01 1 1 S 172043 Brevundimonas nasdae 0.06 5 1 G 20 Phenylobacterium 0.04 3 0 S 284016 Phenylobacterium zucineum 0.04 3 3 S1 450851 Phenylobacterium zucineum HLK1 0.01 1 0 G1 2640670 unclassified Phenylobacterium 0.01 1 1 S 2903901 Phenylobacterium sp. LH3H17 0.02 2 0 G 75 Caulobacter 0.02 2 0 G1 2648921 unclassified Caulobacter 0.02 2 2 S 3016000 Caulobacter sp. NIBR1757 0.14 11 2 O 204455 Rhodobacterales 0.09 7 2 F 31989 Paracoccaceae 0.04 3 0 G 204456 Gemmobacter 0.04 3 3 S 2840474 Gemmobacter fulvus 0.02 2 2 G 265 Paracoccus 0.02 2 0 F 2854170 Roseobacteraceae 0.01 1 0 G 2919626 Alloyangia 0.01 1 1 S 311180 Alloyangia pacifica 0.01 1 0 G 336277 Roseicyclus 0.01 1 1 S 2161673 Roseicyclus marinus 0.04 3 0 O 766 Rickettsiales 0.02 2 0 F 942 Anaplasmataceae 0.01 1 1 G 768 Anaplasma 0.01 1 0 G 943 Ehrlichia 0.01 1 1 G1 106178 canis group 0.01 1 1 F 775 Rickettsiaceae 0.04 3 0 O 1921002 Holosporales 0.01 1 0 F 44746 Holosporaceae 0.01 1 0 G 2654634 Candidatus Hydrogenosomobacter 0.01 1 1 S 2558174 Candidatus Hydrogenosomobacter endosymbioticus 0.01 1 0 F 1777752 Candidatus Paracaedibacteraceae 0.01 1 0 G 3163645 Candidatus Bodocaedibacter 0.01 1 1 S 2741701 Candidatus Bodocaedibacter vickermanii 0.01 1 0 F 2100208 Caedimonadaceae 0.01 1 0 G 1509243 Candidatus Nucleicultrix 0.01 1 0 S 1509244 Candidatus Nucleicultrix amoebiphila 0.01 1 1 S1 1414854 Candidatus Nucleicultrix amoebiphila FS5 0.02 2 0 O 2800060 Hyphomonadales 0.02 2 0 F 69657 Hyphomonadaceae 0.02 2 2 G 85 Hyphomonas 0.01 1 0 O 2066490 Emcibacterales 0.01 1 0 F 2066491 Emcibacteraceae 0.01 1 0 G 2943291 Pseudemcibacter 0.01 1 1 S 2857064 Pseudemcibacter aquimaris 3.84 312 33 C 28216 Betaproteobacteria 3.12 253 20 O 80840 Burkholderiales 1.63 132 39 F 75682 Oxalobacteraceae 0.47 38 35 G 29580 Janthinobacterium 0.04 3 0 G1 2610881 unclassified Janthinobacterium 0.01 1 1 S 1938606 Janthinobacterium sp. LM6 0.01 1 1 S 2497863 Janthinobacterium sp. 17J80-10 0.01 1 1 S 3065910 Janthinobacterium sp. J1-1 0.39 32 9 F1 2895353 Telluria group 0.22 18 7 G 149698 Massilia 0.06 5 5 S 945844 Massilia oculi 0.05 4 0 G1 2609279 unclassified Massilia 0.04 3 3 S 2709303 Massilia sp. Se16.2.3 0.01 1 1 S 1707785 Massilia sp. WG5 0.02 2 2 S 457921 Massilia varians 0.06 5 1 G 1522432 Pseudoduganella 0.05 4 0 G1 2637179 unclassified Pseudoduganella 0.05 4 4 S 2995154 Pseudoduganella sp. SL102 0.21 17 4 G 401469 Undibacterium 0.15 12 5 G1 2630295 unclassified Undibacterium 0.09 7 7 S 3048609 Undibacterium sp. CCC3.4 0.01 1 1 S 401471 Undibacterium parvum 0.05 4 1 G 963 Herbaspirillum 0.04 3 3 S 863372 Herbaspirillum huttiense 0.01 1 0 G 846 Oxalobacter 0.01 1 1 S 933080 Oxalobacter vibrioformis 0.01 1 0 G 884214 Candidatus Zinderia 0.01 1 0 G1 3077950 unclassified Candidatus Zinderia 0.01 1 1 S 3077951 Candidatus Zinderia endosymbiont of Aphrophora alni 0.68 55 10 F 80864 Comamonadaceae 0.39 32 32 G 80865 Delftia 0.10 8 1 G 283 Comamonas 0.05 4 4 S 2743470 Comamonas antarctica 0.01 1 1 S 363952 Comamonas thiooxydans 0.01 1 0 G1 2638500 unclassified Comamonas 0.01 1 1 S 2918299 Comamonas sp. B21-038 0.01 1 1 S 2949090 Comamonas endophytica 0.01 1 0 G 3051138 Paenacidovorax 0.01 1 1 S 1926868 Paenacidovorax monticola 0.01 1 1 G 34072 Variovorax 0.01 1 0 G 232523 Hylemonella 0.01 1 1 S 80880 Hylemonella gracilis 0.01 1 0 G 238749 Diaphorobacter 0.01 1 1 S 3036128 Diaphorobacter limosus 0.01 1 0 G 665874 Limnohabitans 0.01 1 0 G1 2626134 unclassified Limnohabitans 0.01 1 1 S 1751150 Limnohabitans sp. MORI2 0.31 25 1 F 119060 Burkholderiaceae 0.10 8 0 G 48736 Ralstonia 0.09 7 0 G1 3116862 Ralstonia solanacearum species complex 0.09 7 7 S 305 Ralstonia solanacearum 0.01 1 0 G1 209769 unclassified Ralstonia 0.01 1 1 S 2880990 Ralstonia sp. RS650 0.07 6 0 G 32008 Burkholderia 0.06 5 0 G1 111527 pseudomallei group 0.02 2 1 S 28450 Burkholderia pseudomallei 0.01 1 1 S1 1249473 Burkholderia pseudomallei MSHR491 0.01 1 1 S 13373 Burkholderia mallei 0.01 1 0 S 57975 Burkholderia thailandensis 0.01 1 1 S1 1249664 Burkholderia thailandensis 34 0.01 1 1 S 342113 Burkholderia oklahomensis 0.01 1 0 G1 87882 Burkholderia cepacia complex 0.01 1 1 S 488447 Burkholderia contaminans 0.06 5 0 G 106589 Cupriavidus 0.05 4 4 S 164546 Cupriavidus taiwanensis 0.01 1 1 S 82541 Cupriavidus gilardii 0.02 2 1 G 93217 Pandoraea 0.01 1 1 S 93220 Pandoraea pnomenusa 0.02 2 0 G 1822464 Paraburkholderia 0.02 2 2 S 2571748 Paraburkholderia acidisoli 0.01 1 0 G 2038280 Robbsia 0.01 1 0 G1 2636574 unclassified Robbsia 0.01 1 1 S 3149231 Robbsia sp. KACC 23696 0.17 14 0 F 506 Alcaligenaceae 0.09 7 0 G 290425 Advenella 0.09 7 7 S 1481665 Advenella alkanexedens 0.04 3 0 G 1472344 Basilea 0.04 3 0 S 1472345 Basilea psittacipulmonis 0.04 3 3 S1 1072685 Basilea psittacipulmonis DSM 24701 0.02 2 1 G 222 Achromobacter 0.01 1 1 S 217204 Achromobacter insolitus 0.01 1 0 G 90243 Oligella 0.01 1 1 S 90244 Oligella ureolytica 0.01 1 0 G 305976 Pusillimonas 0.01 1 0 G1 2640016 unclassified Pusillimonas 0.01 1 1 S 2716226 Pusillimonas sp. DMV24BSW_D 0.09 7 0 F 2975441 Sphaerotilaceae 0.05 4 4 G 93681 Roseateles 0.02 2 0 G 34102 Sphaerotilus 0.02 2 2 S 2914710 Sphaerotilus microaerophilus 0.01 1 0 G 644355 Inhella 0.01 1 1 S 392593 Inhella inkyongensis 0.14 11 0 O 206351 Neisseriales 0.14 11 3 F 481 Neisseriaceae 0.07 6 0 G 482 Neisseria 0.02 2 2 S 486 Neisseria lactamica 0.02 2 2 S 487 Neisseria meningitidis 0.01 1 1 S 485 Neisseria gonorrhoeae 0.01 1 1 S 28449 Neisseria subflava 0.02 2 0 G 71 Simonsiella 0.02 2 2 S 72 Simonsiella muelleri 0.10 8 1 O 32003 Nitrosomonadales 0.05 4 0 F 206379 Nitrosomonadaceae 0.05 4 2 G 914 Nitrosomonas 0.02 2 2 S 44577 Nitrosomonas ureae 0.02 2 0 F 32011 Methylophilaceae 0.01 1 1 G 81682 Methylovorus 0.01 1 0 G 1679002 Candidatus Methylopumilus 0.01 1 1 S 1581680 Candidatus Methylopumilus turicensis 0.01 1 0 F 2008793 Sterolibacteriaceae 0.01 1 0 G 3050898 Sulfuricystis 0.01 1 1 S 2211108 Sulfuricystis multivorans 0.09 7 0 C1 119066 Betaproteobacteria incertae sedis 0.06 5 0 G 1301080 Candidatus Nasuia 0.06 5 5 S 1160784 Candidatus Nasuia deltocephalinicola 0.02 2 0 G 1381133 Candidatus Profftella 0.02 2 2 S 2661583 Candidatus Profftella armatura (Diaphorina cf. continua) 0.02 2 0 C 1807140 Acidithiobacillia 0.02 2 0 O 225057 Acidithiobacillales 0.02 2 0 F 225058 Acidithiobacillaceae 0.02 2 2 G 119977 Acidithiobacillus 15.34 1245 35 D1 1783272 Terrabacteria group 10.66 865 8 P 1239 Bacillota 9.29 754 8 C 91061 Bacilli 6.71 545 4 O 186826 Lactobacillales 5.46 443 0 F 81852 Enterococcaceae 5.46 443 1 G 1350 Enterococcus 5.41 439 439 S 1351 Enterococcus faecalis 0.02 2 2 S 1354 Enterococcus hirae 0.01 1 1 S 1352 Enterococcus faecium 0.57 46 0 F 1300 Streptococcaceae 0.55 45 8 G 1301 Streptococcus 0.25 20 16 S 1308 Streptococcus thermophilus 0.05 4 4 S1 767463 Streptococcus thermophilus ND03 0.11 9 9 S 1314 Streptococcus pyogenes 0.02 2 2 S 1348 Streptococcus parauberis 0.02 2 2 S 68892 Streptococcus infantis 0.01 1 1 S 1310 Streptococcus sobrinus 0.01 1 0 G1 119603 Streptococcus dysgalactiae group 0.01 1 0 S 1334 Streptococcus dysgalactiae 0.01 1 0 S1 119602 Streptococcus dysgalactiae subsp. equisimilis 0.01 1 1 S2 486410 Streptococcus dysgalactiae subsp. equisimilis GGS_124 0.01 1 0 G1 671232 Streptococcus anginosus group 0.01 1 1 S 1328 Streptococcus anginosus 0.01 1 1 S 1345 Streptococcus ferus 0.01 1 1 G 1357 Lactococcus 0.48 39 1 F 33958 Lactobacillaceae 0.12 10 0 G 1578 Lactobacillus 0.05 4 4 S 83683 Lactobacillus amylolyticus 0.04 3 0 S 1579 Lactobacillus acidophilus 0.04 3 3 S1 272621 Lactobacillus acidophilus NCFM 0.01 1 1 G1 2620435 unclassified Lactobacillus 0.01 1 1 S 33959 Lactobacillus johnsonii 0.01 1 1 S 147802 Lactobacillus iners 0.12 10 7 G 46255 Weissella 0.02 2 2 S 137591 Weissella cibaria 0.01 1 1 S 1249 Weissella paramesenteroides 0.04 3 3 G 2767885 Latilactobacillus 0.02 2 0 G 2767886 Levilactobacillus 0.02 2 2 S 1580 Levilactobacillus brevis 0.02 2 0 G 2742598 Limosilactobacillus 0.01 1 1 S 1598 Limosilactobacillus reuteri 0.01 1 1 S 1613 Limosilactobacillus fermentum 0.02 2 2 G 2767893 Lentilactobacillus 0.02 2 0 G 2767842 Lactiplantibacillus 0.01 1 1 S 1589 Lactiplantibacillus pentosus 0.01 1 1 S 1590 Lactiplantibacillus plantarum 0.02 2 2 G 1243 Leuconostoc 0.01 1 0 G 2767874 Acetilactobacillus 0.01 1 1 S 1720083 Acetilactobacillus jinshanensis 0.01 1 1 G 2767889 Loigolactobacillus 0.01 1 0 G 2767878 Bombilactobacillus 0.01 1 1 S 1303590 Bombilactobacillus bombi 0.01 1 0 G 2767892 Secundilactobacillus 0.01 1 1 S 240427 Secundilactobacillus paracollinoides 0.01 1 0 G 2930384 Periweissella 0.01 1 1 S 2506420 Periweissella cryptocerci 0.11 9 0 F 186828 Carnobacteriaceae 0.09 7 0 G 117563 Granulicatella 0.05 4 4 S 46124 Granulicatella adiacens 0.04 3 3 S 137732 Granulicatella elegans 0.01 1 1 G 2747 Carnobacterium 0.01 1 1 G 29393 Dolosigranulum 0.05 4 1 F 186827 Aerococcaceae 0.01 1 1 G 1375 Aerococcus 0.01 1 0 G 89092 Ignavigranum 0.01 1 1 S 89093 Ignavigranum ruoffiae 0.01 1 0 G 2862144 Ruoffia 0.01 1 1 S 87458 Ruoffia tabacinasalis 2.48 201 9 O 1385 Bacillales 1.31 106 2 F 90964 Staphylococcaceae 1.28 104 4 G 1279 Staphylococcus 0.87 71 70 S 1280 Staphylococcus aureus 0.01 1 1 S1 548473 Staphylococcus aureus subsp. aureus TCH60 0.11 9 9 S 1286 Staphylococcus simulans 0.05 4 4 S 29388 Staphylococcus capitis 0.05 4 4 S 1282 Staphylococcus epidermidis 0.04 3 3 S 28035 Staphylococcus lugdunensis 0.04 3 3 S 29382 Staphylococcus cohnii 0.02 2 2 S 1283 Staphylococcus haemolyticus 0.02 2 2 S 1290 Staphylococcus hominis 0.01 1 1 S 214473 Staphylococcus nepalensis 0.01 1 1 S 2044912 Staphylococcus debuckii 0.85 69 12 F 186817 Bacillaceae 0.36 29 0 G 1386 Bacillus 0.17 14 0 G1 653685 Bacillus subtilis group 0.10 8 0 G2 1938374 Bacillus amyloliquefaciens group 0.05 4 3 S 1390 Bacillus amyloliquefaciens 0.01 1 1 S1 1292358 Bacillus amyloliquefaciens KHG19 0.05 4 4 S 492670 Bacillus velezensis 0.07 6 5 S 1423 Bacillus subtilis 0.01 1 1 S1 86029 Bacillus subtilis subsp. natto 0.15 12 0 G1 86661 Bacillus cereus group 0.04 3 1 S 1396 Bacillus cereus 0.01 1 1 S1 1003239 Bacillus cereus C1L 0.01 1 1 S1 572264 Bacillus cereus 03BB102 0.04 3 3 S 1392 Bacillus anthracis 0.02 2 2 S 1428 Bacillus thuringiensis 0.01 1 1 S 2026186 Bacillus paranthracis 0.01 1 0 G2 2750818 unclassified Bacillus cereus group 0.01 1 1 S 1892404 Bacillus sp. ABP14 0.01 1 1 S 64104 Bacillus pseudomycoides 0.01 1 1 S 1405 Bacillus mycoides 0.02 2 0 G1 185979 unclassified Bacillus (in: firmicutes) 0.02 2 2 S 2874284 Bacillus sp. CRB-7 0.01 1 0 G1 1792192 Bacillus altitudinis complex 0.01 1 1 S 293387 Bacillus altitudinis 0.17 14 0 G 84406 Virgibacillus 0.17 14 14 S 447199 Virgibacillus salarius 0.05 4 2 G 2837504 Heyndrickxia 0.02 2 2 S 1398 Heyndrickxia coagulans 0.05 4 2 G 2893057 Shouchella 0.02 2 2 S 79880 Shouchella clausii 0.02 2 2 G 1055323 Aeribacillus 0.01 1 0 G 2005375 Alkalicoccus 0.01 1 1 S 1667239 Alkalicoccus halolimnae 0.01 1 0 G 175304 Lentibacillus 0.01 1 1 S 1472767 Lentibacillus amyloliquefaciens 0.01 1 1 G 182709 Oceanobacillus 0.01 1 0 G 400634 Lysinibacillus 0.01 1 1 S 2086577 Lysinibacillus timonensis 0.15 12 0 F 186822 Paenibacillaceae 0.12 10 0 G 44249 Paenibacillus 0.04 3 0 G1 185978 unclassified Paenibacillus 0.02 2 2 S 715179 Paenibacillus sp. sptzw28 0.01 1 1 S 2741301 Paenibacillus sp. URB8-2 0.04 3 3 S 44251 Paenibacillus durus 0.01 1 1 S 189691 Paenibacillus elgii 0.01 1 1 S 2509456 Paenibacillus protaetiae 0.01 1 1 S 130049 Paenibacillus dendritiformis 0.01 1 1 S 116718 Paenibacillus azoreducens 0.01 1 0 F1 85151 Aneurinibacillus group 0.01 1 0 G 55079 Aneurinibacillus 0.01 1 1 S 1500254 Aneurinibacillus soli 0.01 1 0 G 329857 Cohnella 0.01 1 1 S 2674991 Cohnella candidum 0.02 2 0 F 186820 Listeriaceae 0.02 2 0 G 1637 Listeria 0.01 1 0 S 1638 Listeria ivanovii 0.01 1 0 S1 202751 Listeria ivanovii subsp. ivanovii 0.01 1 1 S2 881621 Listeria ivanovii subsp. ivanovii PAM 55 0.01 1 1 S 1497681 Listeria newyorkensis 0.01 1 0 F 186818 Planococcaceae 0.01 1 0 G 651660 Paenisporosarcina 0.01 1 1 S 417367 Paenisporosarcina antarctica 0.01 1 0 F 186821 Sporolactobacillaceae 0.01 1 1 G 2077 Sporolactobacillus 0.01 1 1 F 186824 Thermoactinomycetaceae 0.91 74 5 C 186801 Clostridia 0.44 36 0 O 3085636 Lachnospirales 0.44 36 6 F 186803 Lachnospiraceae 0.05 4 3 G 841 Roseburia 0.01 1 1 S 301301 Roseburia hominis 0.05 4 0 G 28050 Lachnospira 0.05 4 4 S 39485 Lachnospira eligens 0.05 4 0 G 1766253 Agathobacter 0.05 4 4 S 39491 Agathobacter rectalis 0.04 3 0 G 2569097 Anaerobutyricum 0.04 3 3 S 39488 Anaerobutyricum hallii 0.02 2 0 G 2316020 Mediterraneibacter 0.02 2 0 S 33039 [Ruminococcus] torques 0.02 2 2 S1 657313 [Ruminococcus] torques L2-14 0.02 2 0 G 189330 Dorea 0.02 2 2 S 88431 Dorea longicatena 0.02 2 0 G 1213720 Stomatobaculum 0.02 2 0 G1 2643635 unclassified Stomatobaculum 0.02 2 2 S 3059030 Stomatobaculum sp. F0698 0.01 1 0 G 1506553 Lachnoclostridium 0.01 1 1 S 29347 [Clostridium] scindens 0.01 1 0 G 2944193 Simiaoa 0.01 1 1 S 2763672 Simiaoa sunii 0.01 1 0 G 2163168 Kineothrix 0.01 1 0 G1 2625420 unclassified Kineothrix 0.01 1 1 S 3070215 Kineothrix sp. MB12-C1 0.01 1 0 G 1164882 Lachnoanaerobaculum 0.01 1 1 S 617123 Lachnoanaerobaculum umeaense 0.01 1 0 G 572511 Blautia 0.01 1 0 S 40520 Blautia obeum 0.01 1 1 S1 657314 Blautia obeum A2-162 0.01 1 0 G 248744 Marvinbryantia 0.01 1 0 S 168384 Marvinbryantia formatexigens 0.01 1 1 S1 478749 Marvinbryantia formatexigens DSM 14469 0.01 1 0 G 207244 Anaerostipes 0.01 1 1 S 1229621 Anaerostipes rhamnosivorans 0.01 1 0 G 33042 Coprococcus 0.01 1 0 G1 2684943 unclassified Coprococcus 0.01 1 1 S 751585 Coprococcus sp. ART55/1 0.01 1 0 G 830 Butyrivibrio 0.01 1 1 S 831 Butyrivibrio fibrisolvens 0.32 26 2 O 186802 Eubacteriales 0.15 12 3 F 216572 Oscillospiraceae 0.04 3 3 G 216851 Faecalibacterium 0.02 2 0 G 1263 Ruminococcus 0.01 1 1 S 1160721 Ruminococcus bicirculans (ex Wegman et al. 2014) 0.01 1 1 S 2564099 Ruminococcus bovis 0.01 1 1 G 2892396 Vescimonas 0.01 1 0 G 292632 Subdoligranulum 0.01 1 1 S 214851 Subdoligranulum variabile 0.01 1 0 G 459786 Oscillibacter 0.01 1 1 S 2763056 Oscillibacter hominis 0.01 1 0 G 2842531 Solibaculum 0.01 1 1 S 2780922 Solibaculum mannosilyticum 0.07 6 0 F 31979 Clostridiaceae 0.07 6 1 G 1485 Clostridium 0.05 4 4 S 1502 Clostridium perfringens 0.01 1 1 S 1491 Clostridium botulinum 0.06 5 1 F 31984 Heliobacteriaceae 0.05 4 0 G 79598 Heliorestis 0.05 4 4 S 356322 Heliorestis convoluta 0.01 1 0 O1 538999 Eubacteriales incertae sedis 0.01 1 0 G 1392389 Intestinimonas 0.01 1 1 S 1297617 Intestinimonas butyriciproducens 0.04 3 0 O 53433 Halanaerobiales 0.04 3 0 F 53434 Halobacteroidaceae 0.04 3 0 G 42417 Halobacteroides 0.04 3 0 S 42422 Halobacteroides halobius 0.04 3 3 S1 748449 Halobacteroides halobius DSM 5150 0.02 2 0 O 68295 Thermoanaerobacterales 0.02 2 0 F 186814 Thermoanaerobacteraceae 0.02 2 2 G 28895 Thermoanaerobacterium 0.02 2 0 O 3082720 Peptostreptococcales 0.02 2 0 F 186804 Peptostreptococcaceae 0.01 1 0 G 1849822 Paraclostridium 0.01 1 1 S 1505 Paraclostridium sordellii 0.01 1 0 G 2743582 Peptacetobacter 0.01 1 1 S 89152 Peptacetobacter hiranonis 0.16 13 0 C 909932 Negativicutes 0.12 10 0 O 1843489 Veillonellales 0.12 10 0 F 31977 Veillonellaceae 0.09 7 4 G 39948 Dialister 0.02 2 2 S 487173 Dialister succinatiphilus 0.01 1 1 S 39950 Dialister pneumosintes 0.02 2 1 G 906 Megasphaera 0.01 1 1 S 907 Megasphaera elsdenii 0.01 1 1 G 29465 Veillonella 0.02 2 0 O 909929 Selenomonadales 0.01 1 0 F 1843490 Sporomusaceae 0.01 1 0 G 81463 Anaeromusa 0.01 1 0 G1 673272 environmental samples 0.01 1 1 S 673273 uncultured Anaeromusa sp. 0.01 1 0 F 1843491 Selenomonadaceae 0.01 1 1 G 970 Selenomonas 0.01 1 0 O 1843488 Acidaminococcales 0.01 1 0 F 909930 Acidaminococcaceae 0.01 1 0 G 904 Acidaminococcus 0.01 1 0 S 905 Acidaminococcus fermentans 0.01 1 1 S1 591001 Acidaminococcus fermentans DSM 20731 0.09 7 0 C 1737404 Tissierellia 0.09 7 0 O 1737405 Tissierellales 0.09 7 0 F 1570339 Peptoniphilaceae 0.06 5 2 G 165779 Anaerococcus 0.02 2 0 S 33034 Anaerococcus prevotii 0.02 2 2 S1 525919 Anaerococcus prevotii DSM 20548 0.01 1 1 S 1755241 Anaerococcus nagyae 0.01 1 0 G 150022 Finegoldia 0.01 1 1 S 1260 Finegoldia magna 0.01 1 1 G 162289 Peptoniphilus 0.07 6 0 C 526524 Erysipelotrichia 0.07 6 0 O 526525 Erysipelotrichales 0.04 3 1 F 128827 Erysipelotrichaceae 0.02 2 1 G 1647 Erysipelothrix 0.01 1 1 S 1648 Erysipelothrix rhusiopathiae 0.04 3 1 F 2810280 Coprobacillaceae 0.02 2 0 G 135858 Catenibacterium 0.01 1 1 S 100886 Catenibacterium mitsuokai 0.01 1 0 G1 2643636 unclassified Catenibacterium 0.01 1 1 S 2478954 Catenibacterium sp. co_0103 0.04 3 0 C 1676648 Limnochordia 0.04 3 0 O 1676649 Limnochordales 0.04 3 0 F 1676650 Limnochordaceae 0.04 3 1 G 1676651 Limnochorda 0.02 2 2 G1 2618576 unclassified Limnochorda 3.17 257 3 P 201174 Actinomycetota 2.99 243 17 C 1760 Actinomycetes 0.94 76 3 O 85009 Propionibacteriales 0.89 72 3 F 31957 Propionibacteriaceae 0.80 65 1 G 1912216 Cutibacterium 0.76 62 62 S 1747 Cutibacterium acnes 0.02 2 2 S 33011 Cutibacterium granulosum 0.02 2 0 G 1911549 Raineyella 0.02 2 2 G1 2662260 unclassified Raineyella 0.01 1 0 G 1743 Propionibacterium 0.01 1 1 S 1744 Propionibacterium freudenreichii 0.01 1 0 G 72763 Tessaracoccus 0.01 1 1 S 1285901 Tessaracoccus defluvii 0.01 1 1 F 85015 Nocardioidaceae 0.90 73 1 O 85007 Mycobacteriales 0.87 71 0 F 1653 Corynebacteriaceae 0.87 71 37 G 1716 Corynebacterium 0.06 5 0 S 441501 Corynebacterium massiliense 0.06 5 5 S1 1121364 Corynebacterium massiliense DSM 45435 0.04 3 3 S 161895 Corynebacterium phocae 0.04 3 0 G1 2624378 unclassified Corynebacterium 0.04 3 3 S 1487956 Corynebacterium sp. ATCC 6931 0.04 3 0 S 575200 Corynebacterium maris 0.04 3 3 S1 1224163 Corynebacterium maris DSM 45190 0.02 2 2 S 108486 Corynebacterium falsenii 0.02 2 2 S 2709392 Corynebacterium qintianiae 0.02 2 2 S 38289 Corynebacterium jeikeium 0.02 2 2 S 35757 Corynebacterium cystitidis 0.01 1 1 S 1719 Corynebacterium pseudotuberculosis 0.01 1 0 S 1717 Corynebacterium diphtheriae 0.01 1 1 S1 257309 Corynebacterium diphtheriae NCTC 13129 0.01 1 1 S 43765 Corynebacterium amycolatum 0.01 1 1 S 161879 Corynebacterium kroppenstedtii 0.01 1 1 S 3049799 Corynebacterium breve 0.01 1 0 S 1404244 Corynebacterium glyciniphilum 0.01 1 1 S1 1404245 Corynebacterium glyciniphilum AJ 3170 0.01 1 1 S 187491 Corynebacterium glaucum 0.01 1 0 S 38288 Corynebacterium genitalium 0.01 1 1 S1 585529 Corynebacterium genitalium ATCC 33030 0.01 1 1 S 1737425 Corynebacterium provencense 0.01 1 1 S 38284 Corynebacterium accolens 0.01 1 1 S 1758466 Corynebacterium faecale 0.01 1 0 S 234828 Corynebacterium caspium 0.01 1 1 S1 1121355 Corynebacterium caspium DSM 44850 0.01 1 0 F 85025 Nocardiaceae 0.01 1 1 G 1827 Rhodococcus 0.43 35 0 O 85011 Kitasatosporales 0.43 35 4 F 2062 Streptomycetaceae 0.37 30 3 G 1883 Streptomyces 0.23 19 2 G1 2593676 unclassified Streptomyces 0.12 10 10 S 2099584 Streptomyces sp. ICC4 0.04 3 3 S 2903645 Streptomyces sp. NBC_00310 0.01 1 1 S 2750025 Streptomyces sp. CB00271 0.01 1 1 S 3062782 Streptomyces sp. HUAS CX7 0.01 1 1 S 2898276 Streptomyces sp. MRC013 0.01 1 1 S 2721173 Streptomyces sp. DSM 40868 0.02 2 0 G1 629295 Streptomyces griseus group 0.02 2 0 G2 1482561 Streptomyces anulatus subgroup 0.02 2 2 S 1892 Streptomyces anulatus 0.01 1 1 S 66428 Streptomyces parvus 0.01 1 1 S 33900 Streptomyces murinus 0.01 1 1 S 83656 Streptomyces tsukubensis 0.01 1 0 G1 1477431 Streptomyces albidoflavus group 0.01 1 1 S 1886 Streptomyces albidoflavus 0.01 1 1 S 1048205 Streptomyces uncialis 0.01 1 1 S 68270 Streptomyces spectabilis 0.01 1 0 G 2063 Kitasatospora 0.01 1 0 G1 2633591 unclassified Kitasatospora 0.01 1 1 S 2903570 Kitasatospora sp. NBC_01246 0.41 33 3 O 85006 Micrococcales 0.25 20 1 F 1268 Micrococcaceae 0.09 7 4 G 57493 Kocuria 0.04 3 3 S 71999 Kocuria palustris 0.04 3 0 G 32207 Rothia 0.02 2 2 S 2047 Rothia dentocariosa 0.01 1 1 S 172042 Rothia aeria 0.04 3 3 G 1269 Micrococcus 0.04 3 0 G 1742989 Glutamicibacter 0.02 2 2 S 37929 Glutamicibacter nicotianae 0.01 1 0 G1 2627139 unclassified Glutamicibacter 0.01 1 1 S 1155384 Glutamicibacter sp. ZJUTW 0.02 2 2 G 57494 Nesterenkonia 0.01 1 0 G 1663 Arthrobacter 0.01 1 0 G1 235627 unclassified Arthrobacter 0.01 1 1 S 2828862 Arthrobacter sp. Helios 0.05 4 0 F 85019 Brevibacteriaceae 0.05 4 3 G 1696 Brevibacterium 0.01 1 0 G1 2614124 unclassified Brevibacterium 0.01 1 1 S 2777556 Brevibacterium sp. SMBL_HHYL_HB1 0.02 2 0 F 2805591 Tropherymataceae 0.02 2 0 G 2038 Tropheryma 0.02 2 2 S 2039 Tropheryma whipplei 0.02 2 0 F 85020 Dermabacteraceae 0.02 2 1 G 43668 Brachybacterium 0.01 1 1 G1 2623841 unclassified Brachybacterium 0.01 1 1 F 85021 Intrasporangiaceae 0.01 1 0 F 85023 Microbacteriaceae 0.01 1 1 G 33886 Rathayibacter 0.04 3 0 O 85004 Bifidobacteriales 0.04 3 0 F 31953 Bifidobacteriaceae 0.04 3 3 G 1678 Bifidobacterium 0.02 2 0 O 2037 Actinomycetales 0.02 2 0 F 2049 Actinomycetaceae 0.01 1 0 G 1654 Actinomyces 0.01 1 1 S 1960083 Actinomyces gaoshouyii 0.01 1 0 G 2692113 Gleimia 0.01 1 1 S 595468 Gleimia hominis 0.02 2 0 O 85010 Pseudonocardiales 0.02 2 0 F 2070 Pseudonocardiaceae 0.01 1 0 G 674734 Alloactinosynnema 0.01 1 0 G1 2636053 unclassified Alloactinosynnema 0.01 1 1 S 1653480 Alloactinosynnema sp. L-07 0.01 1 0 G 402649 Actinomycetospora 0.01 1 0 G1 2636769 unclassified Actinomycetospora 0.01 1 1 S 2975952 Actinomycetospora sp. NBC_00405 0.01 1 0 O 85014 Glycomycetales 0.01 1 0 F 85034 Glycomycetaceae 0.01 1 0 G 2838311 Natronoglycomyces 0.01 1 1 S 2811108 Natronoglycomyces albus 0.01 1 0 O 85008 Micromonosporales 0.01 1 1 F 28056 Micromonosporaceae 0.07 6 0 C 84998 Coriobacteriia 0.05 4 0 O 1643822 Eggerthellales 0.05 4 0 F 1643826 Eggerthellaceae 0.04 3 0 G 79603 Denitrobacterium 0.04 3 3 S 79604 Denitrobacterium detoxificans 0.01 1 1 G 447020 Adlercreutzia 0.02 2 0 O 84999 Coriobacteriales 0.01 1 0 F 84107 Coriobacteriaceae 0.01 1 0 G 102106 Collinsella 0.01 1 1 S 74426 Collinsella aerofaciens 0.01 1 0 F 1643824 Atopobiaceae 0.01 1 1 G 2082587 Parolsenella 0.04 3 0 C 84992 Acidimicrobiia 0.04 3 0 O 84993 Acidimicrobiales 0.02 2 1 F 633392 Iamiaceae 0.01 1 0 G 467975 Iamia 0.01 1 1 S 467976 Iamia majanohamensis 0.01 1 0 F 2448023 Ilumatobacteraceae 0.01 1 0 G 682522 Ilumatobacter 0.01 1 0 S 467094 Ilumatobacter coccineus 0.01 1 1 S1 1313172 Ilumatobacter coccineus YM16-304 0.01 1 0 C 84995 Rubrobacteria 0.01 1 0 O 84996 Rubrobacterales 0.01 1 0 F 84997 Rubrobacteraceae 0.01 1 1 G 42255 Rubrobacter 0.01 1 0 C 1497346 Thermoleophilia 0.01 1 0 O 588673 Solirubrobacterales 0.01 1 0 F 320583 Conexibacteraceae 0.01 1 0 G 191494 Conexibacter 0.01 1 0 G1 2627773 unclassified Conexibacter 0.01 1 1 S 2812560 Conexibacter sp. SYSU D00693 0.54 44 0 D2 1798711 Cyanobacteriota/Melainabacteria group 0.54 44 0 P 1117 Cyanobacteriota 0.54 44 13 C 3028117 Cyanophyceae 0.28 23 0 C1 1301283 Oscillatoriophycideae 0.23 19 0 O 1150 Oscillatoriales 0.20 16 0 F 2934961 Sirenicapillariaceae 0.20 16 0 G 2596745 Limnospira 0.20 16 0 S 147322 Limnospira indica 0.20 16 16 S1 2760438 Limnospira indica BM01 0.04 3 0 F 1892254 Oscillatoriaceae 0.02 2 0 G 1198 Phormidium 0.02 2 0 S 2974039 Phormidium yuhuli 0.02 2 2 S1 2940671 Phormidium yuhuli AB48 0.01 1 0 G 1155738 Moorena 0.01 1 0 S 1155739 Moorena producens 0.01 1 1 S1 1454205 Moorena producens JHB 0.05 4 0 O 1118 Chroococcales 0.02 2 0 F 1890449 Microcystaceae 0.02 2 0 G 1125 Microcystis 0.02 2 0 G1 2643300 unclassified Microcystis 0.02 2 2 S 1967666 Microcystis sp. MC19 0.02 2 0 F 1890450 Aphanothecaceae 0.02 2 0 G 1453359 Candidatus Atelocyanobacterium 0.02 2 0 S 713887 Candidatus Atelocyanobacterium thalassa 0.02 2 2 S1 1285375 cyanobacterium endosymbiont of Braarudosphaera bigelowii 0.04 3 1 O 1161 Nostocales 0.01 1 0 F 1185 Rivulariaceae 0.01 1 0 G 373984 Rivularia 0.01 1 0 G1 2676603 unclassified Rivularia (in: cyanobacteria) 0.01 1 1 S 373994 Rivularia sp. PCC 7116 0.01 1 0 F 1892259 Aphanizomenonaceae 0.01 1 0 G 752201 Sphaerospermopsis 0.01 1 0 S 984207 Sphaerospermopsis torques-reginae 0.01 1 1 S1 984208 Sphaerospermopsis torques-reginae ITEP-024 0.02 2 0 O 1890424 Synechococcales 0.01 1 0 F 1890426 Synechococcaceae 0.01 1 0 G 1129 Synechococcus 0.01 1 0 G1 2626047 unclassified Synechococcus 0.01 1 1 S 221341 Synechococcus sp. Minos11 0.01 1 0 F 2881426 Prochlorococcaceae 0.01 1 1 G 1218 Prochlorococcus 0.02 2 0 O 1955042 Gloeomargaritales 0.02 2 0 F 1955043 Gloeomargaritaceae 0.02 2 0 G 1188227 Gloeomargarita 0.02 2 0 S 1188228 Gloeomargarita lithophora 0.02 2 2 S1 1188229 Gloeomargarita lithophora Alchichica-D10 0.01 1 0 O 3079744 Acaryochloridales 0.01 1 0 F 1890429 Acaryochloridaceae 0.01 1 0 G 155977 Acaryochloris 0.01 1 0 G1 2631661 unclassified Acaryochloris 0.01 1 1 S 2740837 Acaryochloris sp. 'Moss Beach' 0.39 32 12 P 544448 Mycoplasmatota 0.12 10 0 C 31969 Mollicutes 0.11 9 0 O 2085 Mycoplasmatales 0.11 9 0 F 2092 Mycoplasmataceae 0.11 9 0 G 2093 Mycoplasma 0.06 5 0 G1 656088 Mycoplasma mycoides group 0.04 3 3 S 1179777 Mycoplasma feriruminatoris 0.02 2 0 S 2095 Mycoplasma capricolum 0.02 2 2 S1 40480 Mycoplasma capricolum subsp. capripneumoniae 0.05 4 0 G1 2683645 unclassified Mycoplasma 0.05 4 4 S 1749074 Mycoplasma sp. (ex Biomphalaria glabrata) 0.01 1 0 O 186328 Entomoplasmatales 0.01 1 0 F 2131 Spiroplasmataceae 0.01 1 0 G 2132 Spiroplasma 0.01 1 1 G1 2637901 unclassified Spiroplasma 0.12 10 0 O 2790996 Mycoplasmoidales 0.07 6 0 F 2790998 Mycoplasmoidaceae 0.05 4 2 G 2995234 Mycoplasmoides 0.02 2 2 S 92758 Mycoplasmoides fastidiosum 0.02 2 2 G 2129 Ureaplasma 0.05 4 0 F 2895623 Metamycoplasmataceae 0.05 4 1 G 2767358 Mycoplasmopsis 0.01 1 1 S 2113 Mycoplasmopsis californica 0.01 1 1 S 114880 Mycoplasmopsis columbinasalis 0.01 1 1 S 55603 Mycoplasmopsis caviae 0.06 5 0 P 200795 Chloroflexota 0.04 3 0 C 301297 Dehalococcoidia 0.02 2 0 C1 648176 SAR202 cluster 0.02 2 0 O 3143247 Candidatus Lucifugimonadales 0.02 2 0 F 3143248 Candidatus Lucifugimonadaceae 0.02 2 0 G 3143249 Candidatus Lucifugimonas 0.02 2 2 S 3038979 Candidatus Lucifugimonas marina 0.01 1 0 O 1202465 Dehalococcoidales 0.01 1 0 F 1202464 Dehalococcoidaceae 0.01 1 0 G 670486 Dehalogenimonas 0.01 1 1 G1 2638108 unclassified Dehalogenimonas 0.01 1 0 C 292625 Anaerolineae 0.01 1 0 O 292629 Anaerolineales 0.01 1 1 F 292628 Anaerolineaceae 0.01 1 0 C 475962 Caldilineae 0.01 1 0 O 475963 Caldilineales 0.01 1 0 F 475964 Caldilineaceae 0.01 1 0 G 233191 Caldilinea 0.01 1 0 S 133453 Caldilinea aerophila 0.01 1 1 S1 926550 Caldilinea aerophila DSM 14535 = NBRC 104270 0.05 4 0 P 1297 Deinococcota 0.05 4 0 C 188787 Deinococci 0.05 4 0 O 118964 Deinococcales 0.05 4 0 F 183710 Deinococcaceae 0.05 4 0 G 1298 Deinococcus 0.04 3 0 S 55148 Deinococcus proteolyticus 0.04 3 3 S1 693977 Deinococcus proteolyticus MRP 0.01 1 0 S 68909 Deinococcus geothermalis 0.01 1 1 S1 319795 Deinococcus geothermalis DSM 11300 0.04 3 0 P 67819 Armatimonadota 0.04 3 0 C 1077257 Chthonomonadia 0.04 3 0 O 1077263 Chthonomonadales 0.04 3 0 F 1077264 Chthonomonadaceae 0.04 3 0 G 1077265 Chthonomonas 0.04 3 0 S 454171 Chthonomonas calidirosea 0.04 3 3 S1 1303518 Chthonomonas calidirosea T49 4.40 357 0 D1 1783270 FCB group 4.39 356 0 D2 68336 Bacteroidota/Chlorobiota group 3.51 285 0 P 976 Bacteroidota 2.77 225 0 C 768503 Cytophagia 2.77 225 0 O 768507 Cytophagales 2.70 219 0 F 89373 Cytophagaceae 2.70 219 0 G 107 Spirosoma 2.64 214 214 S 2666025 Spirosoma endbachense 0.06 5 5 S 2735870 Spirosoma taeanense 0.02 2 0 F 200667 Flammeovirgaceae 0.01 1 0 G 1649461 Imperialibacter 0.01 1 1 S 1324217 Imperialibacter roseus 0.01 1 0 G 3051458 Chondrinema 0.01 1 1 S 2994555 Chondrinema litorale 0.01 1 0 F 563798 Cyclobacteriaceae 0.01 1 0 G 280472 Aquiflexum 0.01 1 0 S 280473 Aquiflexum balticum 0.01 1 1 S1 758820 Aquiflexum balticum DSM 16537 0.01 1 1 F 1522127 Catalimonadaceae 0.01 1 0 F 1853232 Hymenobacteraceae 0.01 1 0 G 89966 Hymenobacter 0.01 1 1 S 1705399 Hymenobacter monticola 0.01 1 0 F 3141701 Flectobacillaceae 0.01 1 0 G 2676247 Aquirufa 0.01 1 1 S 2516557 Aquirufa nivalisilvae 0.53 43 0 C 200643 Bacteroidia 0.53 43 5 O 171549 Bacteroidales 0.44 36 6 F 171552 Prevotellaceae 0.27 22 2 G 2974251 Segatella 0.15 12 11 S 165179 Segatella copri 0.01 1 1 S1 537011 Segatella copri DSM 18205 0.09 7 7 S 2518605 Segatella hominis 0.01 1 1 S 77095 Segatella bryantii 0.05 4 4 G 838 Prevotella 0.04 3 0 G 577309 Paraprevotella 0.04 3 3 S 454154 Paraprevotella clara 0.01 1 0 G 2884814 Pseudoprevotella 0.01 1 1 S 2133944 Pseudoprevotella muciniphila 0.01 1 0 F 815 Bacteroidaceae 0.01 1 0 G 816 Bacteroides 0.01 1 1 S 817 Bacteroides fragilis 0.01 1 0 F 171550 Rikenellaceae 0.01 1 0 G 239759 Alistipes 0.01 1 1 S 1288121 Alistipes senegalensis 0.14 11 0 C 117747 Sphingobacteriia 0.14 11 0 O 200666 Sphingobacteriales 0.14 11 1 F 84566 Sphingobacteriaceae 0.11 9 4 G 28453 Sphingobacterium 0.01 1 1 S 259 Sphingobacterium thalpophilum 0.01 1 1 S 28454 Sphingobacterium multivorum 0.01 1 1 S 662858 Sphingobacterium bambusae 0.01 1 0 G1 2609468 unclassified Sphingobacterium 0.01 1 1 S 3058432 Sphingobacterium sp. BN32 0.01 1 1 S 3025669 Sphingobacterium oryzagri 0.01 1 1 G 84567 Pedobacter 0.07 6 0 C 117743 Flavobacteriia 0.07 6 0 O 200644 Flavobacteriales 0.04 3 0 F 49546 Flavobacteriaceae 0.01 1 1 G 237 Flavobacterium 0.01 1 0 G 286104 Winogradskyella 0.01 1 1 S 2686077 Winogradskyella forsetii 0.01 1 0 G 363408 Nonlabens 0.01 1 0 G1 2615035 unclassified Nonlabens 0.01 1 1 S 2058134 Nonlabens sp. MB-3u-79 0.04 3 0 F 2762318 Weeksellaceae 0.02 2 1 F1 2782232 Chryseobacterium group 0.01 1 0 G 59732 Chryseobacterium 0.01 1 1 S 373672 Chryseobacterium gambrini 0.01 1 1 G 501783 Cloacibacterium 0.87 71 0 P 1853220 Rhodothermota 0.87 71 0 C 1853222 Rhodothermia 0.87 71 3 O 1853224 Rhodothermales 0.84 68 0 F 563843 Rhodothermaceae 0.84 68 0 G 2893090 Rhodocaloribacter 0.84 68 68 S 2558931 Rhodocaloribacter litoris 0.01 1 0 P 456828 Candidatus Cloacimonadota 0.01 1 0 C 3039863 Candidatus Cloacimonadia 0.01 1 0 O 3039864 Candidatus Cloacimonadales 0.01 1 0 F 3039865 Candidatus Cloacimonadaceae 0.01 1 0 G 456826 Candidatus Cloacimonas 0.01 1 0 S 456827 Candidatus Cloacimonas acidaminovorans 0.01 1 1 S1 459349 Candidatus Cloacimonas acidaminovorans str. Evry 0.55 45 2 P 200940 Thermodesulfobacteriota 0.52 42 0 C 3031651 Desulfuromonadia 0.52 42 0 O 69541 Desulfuromonadales 0.52 42 0 F 213421 Desulfuromonadaceae 0.52 42 41 G 890 Desulfuromonas 0.01 1 1 S 1603606 Desulfuromonas soudanensis 0.01 1 0 C 67799 Thermodesulfobacteria 0.01 1 1 O 188710 Thermodesulfobacteriales 0.41 33 0 D1 1783257 PVC group 0.18 15 0 P 203682 Planctomycetota 0.17 14 4 C 203683 Planctomycetia 0.05 4 0 O 2691354 Pirellulales 0.05 4 1 F 2691357 Pirellulaceae 0.02 2 2 G 2714594 Bremerella 0.01 1 0 G 265487 Blastopirellula 0.01 1 0 G1 2647022 unclassified Blastopirellula 0.01 1 1 S 2943192 Blastopirellula sp. J2-11 0.05 4 0 O 2691356 Isosphaerales 0.05 4 4 F 1763524 Isosphaeraceae 0.02 2 0 O 112 Planctomycetales 0.02 2 0 F 126 Planctomycetaceae 0.01 1 0 G 2795778 Caulifigura 0.01 1 1 S 2527983 Caulifigura coniformis 0.01 1 0 G 3076095 Stratiformator 0.01 1 1 S 2527980 Stratiformator vulcanicus 0.01 1 0 C 2897345 Candidatus Uabimicrobiia 0.01 1 0 O 2897347 Candidatus Uabimicrobiales 0.01 1 0 F 2897348 Candidatus Uabimicrobiaceae 0.01 1 0 G 2897349 Candidatus Uabimicrobium 0.01 1 1 S 2596890 Candidatus Uabimicrobium amorphum 0.17 14 0 P 74201 Verrucomicrobiota 0.10 8 0 C 414999 Opitutia 0.09 7 0 O 415001 Puniceicoccales 0.07 6 0 O1 3056381 Puniceicoccales incertae sedis 0.07 6 0 G 3049269 Candidatus Pelagisphaera 0.07 6 6 S 2684113 Candidatus Pelagisphaera phototrophica 0.01 1 1 F 3056374 Cerasicoccaceae 0.01 1 0 O 415000 Opitutales 0.01 1 1 F 134623 Opitutaceae 0.04 3 0 C 203494 Verrucomicrobiia 0.04 3 0 O 48461 Verrucomicrobiales 0.04 3 0 F 203557 Verrucomicrobiaceae 0.01 1 0 G 2735 Verrucomicrobium 0.01 1 0 G1 2625155 unclassified Verrucomicrobium 0.01 1 1 S 1882831 Verrucomicrobium sp. GAS474 0.01 1 0 G 518753 Luteolibacter 0.01 1 1 S 2728835 Luteolibacter luteus 0.01 1 0 G 2911469 Sulfuriroseicoccus 0.01 1 1 S 2707525 Sulfuriroseicoccus oceanibius 0.04 3 0 P1 326457 Verrucomicrobiota incertae sedis 0.04 3 0 G 1541670 Methylacidimicrobium 0.04 3 3 G1 2730358 unclassified Methylacidimicrobium 0.02 2 0 P 134625 Kiritimatiellota 0.02 2 0 C 2907184 Tichowtungiia 0.02 2 0 O 2907185 Tichowtungiales 0.02 2 0 F 2907186 Tichowtungiaceae 0.02 2 0 G 2907187 Tichowtungia 0.02 2 2 S 2697043 Tichowtungia aerotolerans 0.02 2 0 P 204428 Chlamydiota 0.02 2 1 C 204429 Chlamydiia 0.01 1 1 O 1963360 Parachlamydiales 0.17 14 0 P 508458 Synergistota 0.17 14 0 C 649775 Synergistia 0.17 14 0 O 649776 Synergistales 0.15 12 0 F 649777 Synergistaceae 0.15 12 0 G 81411 Aminomonas 0.15 12 0 S 81412 Aminomonas paucivorans 0.15 12 12 S1 584708 Aminomonas paucivorans DSM 12260 0.01 1 0 F 3029085 Aminithiophilaceae 0.01 1 0 G 3029078 Aminithiophilus 0.01 1 1 S 3029084 Aminithiophilus ramosus 0.01 1 0 F 3029088 Dethiosulfovibrionaceae 0.01 1 0 G 428711 Jonquetella 0.01 1 0 S 428712 Jonquetella anthropi 0.01 1 1 S1 885272 Jonquetella anthropi DSM 22815 0.09 7 0 P 2818505 Myxococcota 0.07 6 0 P1 3031711 Polyangia 0.07 6 1 O 3031712 Polyangiales 0.05 4 1 F 49 Polyangiaceae 0.02 2 0 G 50 Chondromyces 0.02 2 2 S 52 Chondromyces crocatus 0.01 1 0 G 39643 Sorangium 0.01 1 1 S 56 Sorangium cellulosum 0.01 1 0 F 1055686 Sandaracinaceae 0.01 1 0 G 1055688 Sandaracinus 0.01 1 1 S 927083 Sandaracinus amylolyticus 0.01 1 0 C 32015 Myxococcia 0.01 1 0 O 29 Myxococcales 0.01 1 0 O1 80811 Cystobacterineae 0.01 1 0 F 1524215 Anaeromyxobacteraceae 0.01 1 0 G 161492 Anaeromyxobacter 0.01 1 0 G1 2620896 unclassified Anaeromyxobacter 0.01 1 1 S 447217 Anaeromyxobacter sp. K 0.07 6 0 P 29547 Campylobacterota 0.07 6 0 C 3031852 Epsilonproteobacteria 0.07 6 0 O 213849 Campylobacterales 0.05 4 0 F 72293 Helicobacteraceae 0.05 4 0 G 209 Helicobacter 0.02 2 2 S 213 Helicobacter cinaedi 0.02 2 2 S 210 Helicobacter pylori 0.02 2 0 F 2932623 Sulfurospirillaceae 0.02 2 0 G 57665 Sulfurospirillum 0.02 2 0 S 66821 Sulfurospirillum multivorans 0.02 2 2 S1 1150621 Sulfurospirillum multivorans DSM 12446 0.06 5 0 D1 2323 Bacteria incertae sedis 0.06 5 0 D2 1783234 Bacteria candidate phyla 0.02 2 1 P 95818 Candidatus Saccharibacteria 0.01 1 0 C 2093818 Candidatus Saccharimonadia 0.01 1 0 O 2093819 Candidatus Nanosynbacterales 0.01 1 0 F 2093822 Candidatus Nanosynbacteraceae 0.01 1 1 G 2093823 Candidatus Nanosynbacter 0.02 2 0 D3 95901 Candidatus Dependentiae 0.02 2 0 C 2497643 Candidatus Babeliae 0.02 2 0 O 2497644 Candidatus Babeliales 0.02 2 0 F 2953756 Candidatus Chromulinivoraceae 0.02 2 0 G 2953757 Candidatus Chromulinivorax 0.02 2 2 S 2066483 Candidatus Chromulinivorax destructor 0.01 1 0 P 1383058 Candidatus Fervidibacterota 0.01 1 0 G 1448928 Candidatus Fervidibacter 0.01 1 1 S 1448929 Candidatus Fervidibacter sacchari 0.05 4 0 P 32066 Fusobacteriota 0.05 4 0 C 203490 Fusobacteriia 0.05 4 0 O 203491 Fusobacteriales 0.05 4 0 F 1129771 Leptotrichiaceae 0.05 4 2 G 32067 Leptotrichia 0.01 1 1 S 157691 Leptotrichia shahii 0.01 1 0 G1 2633022 unclassified Leptotrichia 0.01 1 1 S 1785996 Leptotrichia sp. oral taxon 847 0.04 3 0 P 203691 Spirochaetota 0.04 3 0 C 203692 Spirochaetia 0.04 3 0 O 136 Spirochaetales 0.02 2 0 F 1643685 Borreliaceae 0.02 2 0 G 64895 Borreliella 0.02 2 2 S 29519 Borreliella garinii 0.01 1 0 F 137 Spirochaetaceae 0.01 1 0 G 3115661 Candidatus Haliotispira 0.01 1 1 S 3034016 Candidatus Haliotispira prima 0.01 1 0 P 200783 Aquificota 0.01 1 0 C 187857 Aquificia 0.01 1 0 O 32069 Aquificales 0.01 1 0 F 64898 Aquificaceae 0.01 1 0 G 168657 Hydrogenobaculum 0.01 1 1 G1 2622382 unclassified Hydrogenobaculum 0.01 1 0 P 200930 Deferribacterota 0.01 1 0 C 68337 Deferribacteres 0.01 1 0 O 191393 Deferribacterales 0.01 1 0 F 2945021 Calditerrivibrionaceae 0.01 1 0 G 545865 Calditerrivibrio 0.01 1 0 S 477976 Calditerrivibrio nitroreducens 0.01 1 1 S1 768670 Calditerrivibrio nitroreducens DSM 19672 0.01 1 0 P 3018035 Bdellovibrionota 0.01 1 0 C 3031419 Bacteriovoracia 0.01 1 0 O 2024979 Bacteriovoracales 0.01 1 0 F 263369 Bacteriovoracaceae 0.01 1 0 G 146784 Bacteriovorax 0.01 1 1 S 960 Bacteriovorax stolpii 0.06 5 0 D 10239 Viruses 0.05 4 0 C 2840056 Naldaviricetes 0.05 4 0 O 2840070 Lefavirales 0.05 4 0 F 10442 Baculoviridae 0.05 4 0 G 558017 Betabaculovirus 0.05 4 0 S 3051997 Betabaculovirus chofumiferanae 0.05 4 4 S1 56947 Choristoneura fumiferana granulovirus 0.01 1 0 D1 2731341 Duplodnaviria 0.01 1 0 K 2731360 Heunggongvirae 0.01 1 0 P 2731618 Uroviricota 0.01 1 0 C 2731619 Caudoviricetes 0.01 1 0 F 2946170 Straboviridae 0.01 1 0 F1 1198136 Tevenvirinae 0.01 1 0 G 10663 Tequatrovirus 0.01 1 0 S 2846203 Tequatrovirus shfml11 0.01 1 1 S1 1863008 Shigella phage SHFML-11