0.24 171 171 U 0 unclassified 99.76 71317 3 R 1 root 99.76 71313 0 R1 131567 cellular organisms 99.76 71313 17758 D 2 Bacteria 55.92 39974 399 P 1224 Pseudomonadota 52.59 37599 2391 C 1236 Gammaproteobacteria 40.78 29150 2340 O 91347 Enterobacterales 34.13 24402 2749 F 543 Enterobacteriaceae 16.67 11918 180 G 561 Escherichia 16.25 11619 10893 S 562 Escherichia coli 0.28 197 197 S1 316435 Escherichia coli Nissle 1917 0.18 127 17 S1 83334 Escherichia coli O157:H7 0.13 96 96 S2 155864 Escherichia coli O157:H7 str. EDL933 0.01 10 10 S2 502346 Escherichia coli O157:H7 str. TW14588 0.01 4 4 S2 1328859 Escherichia coli O157:H7 str. SS17 0.13 95 95 S1 2079157 Escherichia coli O2:H1 0.09 66 66 S1 655817 Escherichia coli ABU 83972 0.08 58 58 S1 331112 Escherichia coli HS 0.07 48 48 S1 1322345 Escherichia coli ATCC 25922 0.07 47 47 S1 2874053 Escherichia coli O25:H1 0.05 34 34 S1 1446600 Escherichia coli O15:H18 0.03 20 20 S1 244320 Escherichia coli O55:H7 0.02 11 11 S1 362663 Escherichia coli 536 0.01 9 9 S1 439855 Escherichia coli SMS-3-5 0.01 6 6 S1 376725 Escherichia coli O103:H2 0.01 5 0 S1 1038927 Escherichia coli O104:H4 0.01 5 5 S2 1134782 Escherichia coli O104:H4 str. 2009EL-2050 0.00 2 2 S1 83333 Escherichia coli K-12 0.00 1 1 S1 405955 Escherichia coli APEC O1 0.08 57 57 S 208962 Escherichia albertii 0.08 55 55 S 1499973 Escherichia marmotae 0.01 7 7 S 564 Escherichia fergusonii 5.44 3887 49 G 590 Salmonella 5.22 3731 915 S 28901 Salmonella enterica 3.94 2816 125 S1 59201 Salmonella enterica subsp. enterica 1.14 816 816 S2 2583588 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- 0.71 506 0 S2 58096 Salmonella enterica subsp. enterica serovar Bareilly 0.67 477 477 S3 1182177 Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000752 0.03 25 25 S3 1182172 Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000661 0.01 4 4 S3 1173427 Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000189 0.38 275 275 S2 149539 Salmonella enterica subsp. enterica serovar Enteritidis 0.38 274 274 S2 600 Salmonella enterica subsp. enterica serovar Thompson 0.36 260 14 S2 611 Salmonella enterica subsp. enterica serovar Heidelberg 0.33 237 237 S3 1124936 Salmonella enterica subsp. enterica serovar Heidelberg str. 41578 0.01 9 9 S3 1160717 Salmonella enterica subsp. enterica serovar Heidelberg str. B182 0.33 239 239 S2 2579247 Salmonella enterica subsp. enterica serovar Rough O:-:- 0.21 149 112 S2 90371 Salmonella enterica subsp. enterica serovar Typhimurium 0.04 26 26 S3 1008297 Salmonella enterica subsp. enterica serovar Typhimurium str. 798 0.02 11 11 S3 1454647 Salmonella enterica subsp. enterica serovar Typhimurium str. USDA-ARS-USMARC-1810 0.06 46 46 S2 90105 Salmonella enterica subsp. enterica serovar Saintpaul 0.05 38 0 S2 1242084 Salmonella enterica subsp. enterica serovar Krefeld 0.05 38 38 S3 1242106 Salmonella enterica subsp. enterica serovar Krefeld str. SA20030536 0.05 34 34 S2 115981 Salmonella enterica subsp. enterica serovar Montevideo 0.02 17 6 S2 108619 Salmonella enterica subsp. enterica serovar Newport 0.02 11 11 S3 858307 Salmonella enterica subsp. enterica serovar Newport str. CVM N1543 0.01 10 10 S2 90370 Salmonella enterica subsp. enterica serovar Typhi 0.01 5 5 S2 192955 Salmonella enterica subsp. enterica serovar Kentucky 0.01 5 5 S2 82689 Salmonella enterica subsp. enterica serovar Muenster 0.01 4 4 S2 98360 Salmonella enterica subsp. enterica serovar Dublin 0.01 4 4 S2 58712 Salmonella enterica subsp. enterica serovar Anatum 0.00 3 3 S2 29474 Salmonella enterica subsp. enterica serovar California 0.00 3 3 S2 440524 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- 0.00 1 1 S2 595 Salmonella enterica subsp. enterica serovar Infantis 0.00 1 1 S2 286783 Salmonella enterica subsp. enterica serovar Indiana 0.00 1 0 S2 57046 Salmonella enterica subsp. enterica serovar Paratyphi C 0.00 1 1 S3 476213 Salmonella enterica subsp. enterica serovar Paratyphi C str. RKS4594 0.15 107 0 S 54736 Salmonella bongori 0.15 107 107 S1 1299282 Salmonella bongori CFSAN000510 3.73 2665 0 G 547 Enterobacter 3.68 2634 5 G1 354276 Enterobacter cloacae complex 2.64 1885 1885 S 299767 Enterobacter ludwigii 0.71 504 499 S 158836 Enterobacter hormaechei 0.01 5 5 S1 1296536 Enterobacter hormaechei subsp. xiangfangensis 0.13 93 15 S 550 Enterobacter cloacae 0.11 78 78 S1 336306 Enterobacter cloacae subsp. cloacae 0.11 80 80 S 208224 Enterobacter kobei 0.07 52 52 S 61645 Enterobacter asburiae 0.02 15 15 S 1812935 Enterobacter roggenkampii 0.04 28 28 S 881260 Enterobacter bugandensis 0.00 3 0 G1 2608935 unclassified Enterobacter 0.00 2 2 S 2870346 Enterobacter sp. C2 0.00 1 1 S 2724468 Enterobacter sp. JUb54 1.99 1423 1 F1 2890311 Klebsiella/Raoultella group 1.98 1412 23 G 570 Klebsiella 1.53 1094 918 S 573 Klebsiella pneumoniae 0.17 123 122 S1 72407 Klebsiella pneumoniae subsp. pneumoniae 0.00 1 1 S2 1094170 Klebsiella pneumoniae subsp. pneumoniae KPNIH10 0.07 53 53 S1 1049565 Klebsiella pneumoniae KCTC 2242 0.21 151 20 S 1463165 Klebsiella quasipneumoniae 0.18 131 131 S1 1667327 Klebsiella quasipneumoniae subsp. quasipneumoniae 0.07 49 19 S 244366 Klebsiella variicola 0.04 30 30 S1 640131 Klebsiella variicola At-22 0.05 35 35 S 548 Klebsiella aerogenes 0.03 23 0 G1 2608929 unclassified Klebsiella 0.02 15 15 S 2851540 Klebsiella sp. PL-2018 0.01 8 8 S 2829835 Klebsiella sp. P1954 0.03 20 20 S 1134687 Klebsiella michiganensis 0.01 10 10 S 2153354 Klebsiella huaxiensis 0.01 5 5 S 1259973 Klebsiella electrica 0.00 2 2 S 571 Klebsiella oxytoca 0.01 10 0 G 160674 Raoultella 0.01 6 6 S 54291 Raoultella ornithinolytica 0.00 3 3 S 575 Raoultella planticola 0.00 1 0 G1 2627600 unclassified Raoultella 0.00 1 1 S 2799495 Raoultella sp. XY-1 0.41 293 0 G 620 Shigella 0.39 279 279 S 623 Shigella flexneri 0.02 14 14 S 621 Shigella boydii 0.40 287 4 G 544 Citrobacter 0.30 215 0 G1 1344959 Citrobacter freundii complex 0.16 114 114 S 1639133 Citrobacter portucalensis 0.09 62 62 S 67828 Citrobacter gillenii 0.03 24 24 S 546 Citrobacter freundii 0.02 15 0 G2 2816438 unclassified Citrobacter freundii complex 0.02 14 14 S 1686385 Citrobacter sp. BIDMC108 0.00 1 1 S 2077149 Citrobacter freundii complex sp. CFNIH9 0.05 37 37 S 2971264 Citrobacter enshiensis 0.04 27 0 S 35703 Citrobacter amalonaticus 0.04 27 27 S1 1261127 Citrobacter amalonaticus Y19 0.00 3 3 S 545 Citrobacter koseri 0.00 1 0 G1 2644389 unclassified Citrobacter 0.00 1 1 S 2742624 Citrobacter sp. RHB25-C09 0.39 278 0 F1 191675 Enterobacteriaceae incertae sedis 0.39 278 2 F2 84563 ant, tsetse, mealybug, aphid, etc. endosymbionts 0.32 231 0 F3 84564 ant endosymbionts 0.21 147 0 G 1699619 Candidatus Westeberhardia 0.21 147 147 S 1594731 Candidatus Westeberhardia cardiocondylae 0.12 84 0 G 203804 Candidatus Blochmanniella 0.11 78 36 G1 711328 unclassified Candidatus Blochmanniella 0.06 41 41 S 1505596 Blochmannia endosymbiont of Polyrhachis (Hedomyrma) turneri 0.00 1 1 S 2681986 Blochmannia endosymbiont of Camponotus nipponensis 0.00 3 3 S 251538 Candidatus Blochmannia ocreatus 0.00 3 3 S 251540 Candidatus Blochmannia vicinus 0.03 25 0 F3 146507 aphid secondary symbionts 0.02 13 13 S 1199245 secondary endosymbiont of Ctenarytaina eucalypti 0.01 7 0 G 568988 Candidatus Regiella 0.01 7 0 G1 3077955 unclassified Candidatus Regiella 0.01 7 7 S 3077956 Candidatus Regiella endosymbiont of Tuberolachnus salignus 0.00 3 1 G 568987 Candidatus Hamiltonella 0.00 2 2 S 138072 Candidatus Hamiltonella defensa 0.00 2 2 S 134287 secondary endosymbiont of Heteropsylla cubana 0.01 10 1 G 1302410 Candidatus Annandia 0.01 9 9 S 1302411 Candidatus Annandia adelgestsuga 0.00 3 0 G 1906659 Candidatus Hoaglandella 0.00 3 3 S 1778263 Candidatus Hoaglandella endobia 0.00 3 0 G 1906660 Candidatus Mikella 0.00 3 3 S 1778264 Candidatus Mikella endobia 0.00 1 0 G 801 Symbiopectobacterium 0.00 1 1 S 2871826 Symbiopectobacterium purcellii 0.00 1 0 G 472825 Candidatus Purcelliella 0.00 1 1 S 472834 Candidatus Purcelliella pentastirinorum 0.00 1 0 G 1906657 Candidatus Doolittlea 0.00 1 1 S 1778262 Candidatus Doolittlea endobia 0.00 1 0 G 1906661 Candidatus Gullanella 0.00 1 1 S 1070130 Candidatus Gullanella endobia 0.33 233 21 F1 36866 unclassified Enterobacteriaceae 0.14 103 103 S 2675793 Enterobacteriaceae endosymbiont of Plateumaris braccata 0.12 88 88 S 2675787 Enterobacteriaceae endosymbiont of Donacia tomentosa 0.02 14 14 S 2675780 Enterobacteriaceae endosymbiont of Donacia piscatrix 0.00 3 3 S 2675797 Enterobacteriaceae endosymbiont of Plateumaris sericea 0.00 3 3 S 2675782 Enterobacteriaceae endosymbiont of Donacia proxima 0.00 1 1 S 2675786 Enterobacteriaceae endosymbiont of Donacia thalassina 0.27 194 0 G 2815296 Jejubacter 0.27 194 194 S 2579935 Jejubacter calystegiae 0.25 181 0 G 1330547 Kosakonia 0.24 170 170 S 208223 Kosakonia cowanii 0.02 11 11 S 283686 Kosakonia radicincitans 0.10 75 0 G 409304 Candidatus Ishikawella 0.10 75 0 S 168169 Candidatus Ishikawella capsulata 0.10 75 75 S1 476281 Candidatus Ishikawaella capsulata Mpkobe 0.08 54 0 G 1048757 Candidatus Moranella 0.08 54 54 S 1048758 Candidatus Moranella endobia 0.06 41 0 G 1330545 Lelliottia 0.06 41 41 S 61646 Lelliottia amnigena 0.05 38 0 G 2726810 Scandinavium 0.05 38 38 S 1851514 Scandinavium goeteborgense 0.04 32 0 G 2303321 Superficieibacter 0.04 32 0 G1 2645744 unclassified Superficieibacter 0.04 32 32 S 3031919 Superficieibacter sp. HKU1 0.04 31 0 G 1177214 Candidatus Profftia 0.04 29 0 G1 2735709 unclassified Candidatus Profftia 0.04 29 29 S 2864218 Candidatus Profftia sp. (ex Adelges kitamiensis) 0.00 2 2 S 1177216 Candidatus Profftia tarda 0.01 5 0 G 1335483 Shimwellia 0.01 5 5 S 563 Shimwellia blattae 0.01 5 0 G 702 Plesiomonas 0.01 5 5 S 703 Plesiomonas shigelloides 0.00 3 0 G 83654 Leclercia 0.00 1 1 S 83655 Leclercia adecarboxylata 0.00 1 0 G1 2627398 unclassified Leclercia 0.00 1 1 S 2898725 Leclercia sp. G3L 0.00 1 1 S 2815358 Leclercia pneumoniae 0.00 3 3 G 158483 Cedecea 0.00 2 0 G 1081630 Candidatus Schneideria 0.00 2 2 S 1081631 Candidatus Schneideria nysicola 0.00 1 0 G 413496 Cronobacter 0.00 1 1 S 28141 Cronobacter sakazakii 0.00 1 1 G 401618 Candidatus Riesia 0.00 1 0 G 1903434 Atlantibacter 0.00 1 1 S 565 Atlantibacter hermannii 0.00 1 0 G 158851 Trabulsiella 0.00 1 1 S 379893 Trabulsiella odontotermitis 0.00 1 0 G 82976 Buttiauxella 0.00 1 0 G1 2634062 unclassified Buttiauxella 0.00 1 1 S 2986951 Buttiauxella sp. WJP83 1.27 910 0 F 2812006 Bruguierivoracaceae 1.27 910 0 G 84565 Sodalis 0.98 699 699 S 2697027 Sodalis ligni 0.28 201 0 S 1486991 Candidatus Sodalis pierantonius 0.28 201 201 S1 2342 Candidatus Sodalis pierantonius str. SOPE 0.01 7 0 G1 2636512 unclassified Sodalis 0.01 7 7 S 1929246 Sodalis endosymbiont of Henestaris halophilus 0.00 3 3 S 1239307 Sodalis praecaptivus 0.88 629 2 F 1903411 Yersiniaceae 0.54 384 0 G 613 Serratia 0.34 244 242 S 138074 Serratia symbiotica 0.00 2 2 S1 3066236 Serratia symbiotica (Periphyllus acericola) 0.09 66 66 S 614 Serratia liquefaciens 0.06 42 42 S 61652 Serratia rubidaea 0.03 22 0 G1 2647522 unclassified Serratia (in: enterobacteria) 0.03 22 22 S 2785630 Serratia sp. CMO1 0.01 10 0 S 82996 Serratia plymuthica 0.01 10 10 S1 1006598 Serratia plymuthica RVH1 0.31 224 0 G 629 Yersinia 0.26 189 0 G1 1649845 Yersinia pseudotuberculosis complex 0.26 189 7 S 632 Yersinia pestis 0.22 156 156 S1 748678 Yersinia pestis str. Pestoides B 0.02 11 11 S1 649716 Yersinia pestis Pestoides G 0.01 10 10 S1 360102 Yersinia pestis Antiqua 0.01 5 5 S1 1345701 Yersinia pestis 790 0.04 32 32 S 935293 Yersinia entomophaga 0.00 2 2 S 630 Yersinia enterocolitica 0.00 1 0 S 29483 Yersinia aldovae 0.00 1 1 S1 1453495 Yersinia aldovae 670-83 0.03 18 18 G 1927833 Candidatus Fukatsuia 0.00 1 0 G 1745211 Chania 0.00 1 0 S 1639108 Chania multitudinisentens 0.00 1 1 S1 1441930 Chania multitudinisentens RB-25 0.52 374 21 F 1903414 Morganellaceae 0.18 128 0 G 581 Morganella 0.18 128 119 S 582 Morganella morganii 0.01 9 9 S1 180434 Morganella morganii subsp. morganii 0.15 107 7 G 637 Arsenophonus 0.09 62 0 G1 2627083 unclassified Arsenophonus 0.06 41 41 S 3041619 Arsenophonus sp. aPb 0.03 20 20 S 3066235 Arsenophonus endosymbiont of Crataerina pallida 0.00 1 1 S 634121 Arsenophonus symbiont of Ornithomya chloropus 0.05 36 36 S 638 Arsenophonus nasoniae 0.00 2 2 S 634113 Candidatus Arsenophonus lipoptenae 0.07 53 3 G 583 Proteus 0.07 47 47 S 584 Proteus mirabilis 0.00 3 0 S 1574161 Proteus terrae 0.00 3 3 S1 626774 Proteus terrae subsp. cibarius 0.04 27 0 G 626 Xenorhabdus 0.03 19 0 S 40577 Xenorhabdus poinarii 0.03 19 19 S1 1354304 Xenorhabdus poinarii G6 0.01 6 6 S 290110 Xenorhabdus budapestensis 0.00 2 2 S 351671 Xenorhabdus doucetiae 0.03 20 19 G 29487 Photorhabdus 0.00 1 1 S 171438 Photorhabdus akhurstii 0.03 18 0 G 586 Providencia 0.02 11 0 S 516075 Providencia sneebia 0.02 11 11 S1 1141660 Providencia sneebia DSM 19967 0.01 6 6 S 1715285 Candidatus Providencia siddallii 0.00 1 0 G1 2633465 unclassified Providencia 0.00 1 1 S 2939731 Providencia sp. PROV188 0.32 228 15 F 1903409 Erwiniaceae 0.17 121 0 G 551 Erwinia 0.10 68 68 S 1922217 Candidatus Erwinia haradaeae 0.07 50 0 G1 2622719 unclassified Erwinia 0.07 49 49 S 215689 Erwinia sp. Ejp617 0.00 1 1 S 3141543 Erwinia sp. HDF1-3R 0.00 3 3 S 65700 Erwinia tracheiphila 0.09 63 12 G 53335 Pantoea 0.05 38 38 S 1235990 Candidatus Pantoea carbekii 0.02 13 13 S 59814 Pantoea dispersa 0.04 26 0 G 32199 Buchnera 0.04 26 14 S 9 Buchnera aphidicola 0.01 6 6 S1 2315800 Buchnera aphidicola (Stegophylla sp.) 0.00 3 3 S1 1241860 Buchnera aphidicola (Hyperomyzus lactucae) 0.00 2 2 S1 1965431 Buchnera aphidicola (Ceratoglyphina bambusae) 0.00 1 1 S1 3075417 Buchnera aphidicola (Mindarus japonicus) 0.00 1 0 G 51228 Wigglesworthia 0.00 1 0 S 51229 Wigglesworthia glossinidia 0.00 1 0 S1 36868 Wigglesworthia glossinidia endosymbiont of Glossina morsitans 0.00 1 1 S2 1142511 Wigglesworthia glossinidia endosymbiont of Glossina morsitans morsitans (Yale colony) 0.00 1 0 G 2997349 Winslowiella 0.00 1 1 S 92490 Winslowiella toletana 0.00 1 0 G 3231896 Paramixta 0.00 1 1 S 2740817 Paramixta manurensis 0.26 183 1 F 1903410 Pectobacteriaceae 0.15 104 15 G 204037 Dickeya 0.07 49 49 S 1089444 Dickeya solani 0.04 27 27 S 1778540 Dickeya fangzhongdai 0.01 7 0 S 204038 Dickeya dadantii 0.01 6 6 S1 1224149 Dickeya dadantii NCPPB 3537 0.00 1 1 S1 198628 Dickeya dadantii 3937 0.01 4 4 S 204042 Dickeya zeae 0.00 2 2 S 2259638 Dickeya lacustris 0.11 77 0 G 122277 Pectobacterium 0.07 50 41 S 1905730 Pectobacterium parmentieri 0.01 9 9 S1 561231 Pectobacterium parmentieri WPP163 0.02 14 14 S 2485124 Pectobacterium polonicum 0.01 7 7 S 2488639 Pectobacterium versatile 0.01 4 0 G1 2627739 unclassified Pectobacterium 0.01 4 4 S 2738983 Pectobacterium sp. PL64 0.00 2 2 S 180957 Pectobacterium brasiliense 0.00 1 0 G 71655 Brenneria 0.00 1 1 S 55213 Brenneria rubrifaciens 0.09 66 0 F 1903412 Hafniaceae 0.09 66 56 G 635 Edwardsiella 0.01 8 8 S 636 Edwardsiella tarda 0.00 2 2 S 67780 Edwardsiella ictaluri 0.02 16 0 F 3120698 Gallaecimonadaceae 0.02 16 0 G 745410 Gallaecimonas 0.02 16 16 S 3029055 Gallaecimonas kandeliae 0.00 2 0 F 1903416 Budviciaceae 0.00 2 0 G 2172100 Limnobaculum 0.00 2 2 S 2498113 Limnobaculum zhutongyuii 2.00 1428 0 O 135625 Pasteurellales 2.00 1428 11 F 712 Pasteurellaceae 1.89 1350 0 G 713 Actinobacillus 1.84 1315 0 S 718 Actinobacillus equuli 1.84 1315 1315 S1 202948 Actinobacillus equuli subsp. haemolyticus 0.05 34 34 S 157339 Actinobacillus arthritidis 0.00 1 0 S 67854 Actinobacillus succinogenes 0.00 1 1 S1 339671 Actinobacillus succinogenes 130Z 0.05 33 2 G 724 Haemophilus 0.03 19 19 S 729 Haemophilus parainfluenzae 0.01 10 10 S 735 Haemophilus parahaemolyticus 0.00 1 1 S 726 Haemophilus haemolyticus 0.00 1 1 S 730 [Haemophilus] ducreyi 0.02 13 0 G 745 Pasteurella 0.02 12 12 S 747 Pasteurella multocida 0.00 1 1 S 2827233 Pasteurella atlantica 0.01 8 0 G 2899790 Mergibacter 0.01 8 8 S 221402 Mergibacter septicus 0.01 7 0 G 75984 Mannheimia 0.01 5 5 S 85402 Mannheimia granulomatis 0.00 2 2 S 85404 Mannheimia varigena 0.01 4 0 G 155493 Gallibacterium 0.01 4 4 S 750 Gallibacterium anatis 0.00 1 0 G 214906 Histophilus 0.00 1 1 S 731 Histophilus somni 0.00 1 0 G 1960084 Rodentibacter 0.00 1 1 S 2778911 Rodentibacter haemolyticus 1.60 1143 0 O 135623 Vibrionales 1.60 1143 135 F 641 Vibrionaceae 1.19 849 11 G 662 Vibrio 0.82 587 0 S 52443 Vibrio tapetis 0.82 587 587 S1 1671868 Vibrio tapetis subsp. tapetis 0.20 143 143 S 666 Vibrio cholerae 0.05 35 3 G1 2614977 unclassified Vibrio 0.04 28 28 S 2661921 Vibrio sp. THAF191c 0.00 1 1 S 2819103 Vibrio sp. SCSIO 43009 0.00 1 1 S 2661922 Vibrio sp. THAF191d 0.00 1 1 S 2822843 Vibrio sp. SCSIO 43186 0.00 1 1 S 2751177 Vibrio sp. B1FIG11 0.04 30 30 S 2572923 Vibrio taketomensis 0.03 18 0 G1 717610 Vibrio harveyi group 0.02 12 12 S 670 Vibrio parahaemolyticus 0.01 4 4 S 663 Vibrio alginolyticus 0.00 2 2 S 669 Vibrio harveyi 0.02 11 0 G1 87806 environmental samples 0.02 11 11 S 114054 uncultured Vibrio sp. 0.01 6 0 S 672 Vibrio vulnificus 0.01 6 6 S1 914127 Vibrio vulnificus MO6-24/O 0.01 4 4 S 104609 Vibrio penaeicida 0.00 3 0 S 55601 Vibrio anguillarum 0.00 3 3 S1 42323 Vibrio anguillarum serovar O1 0.00 1 1 S 1381081 Vibrio panuliri 0.22 156 0 G 657 Photobacterium 0.14 99 22 S 553611 Photobacterium leiognathi 0.11 77 77 S1 48408 Photobacterium leiognathi subsp. mandapamensis 0.08 57 0 S 38293 Photobacterium damselae 0.07 53 53 S1 38294 Photobacterium damselae subsp. piscicida 0.01 4 4 S1 85581 Photobacterium damselae subsp. damselae 0.00 2 0 G 511678 Aliivibrio 0.00 2 0 S 40269 Aliivibrio salmonicida 0.00 2 2 S1 316275 Aliivibrio salmonicida LFI1238 0.00 1 0 G 51366 Salinivibrio 0.00 1 1 S 1908198 Salinivibrio kushneri 1.39 995 0 O 135624 Aeromonadales 1.39 995 109 F 84642 Aeromonadaceae 0.79 563 8 G 642 Aeromonas 0.58 413 413 S 654 Aeromonas veronii 0.11 76 76 S 652 Aeromonas schubertii 0.07 53 0 G1 257493 unclassified Aeromonas 0.07 48 48 S 2560029 Aeromonas sp. 2692-1 0.01 5 5 S 2920537 Aeromonas sp. 19NY04SH05-1 0.01 8 8 S 648 Aeromonas caviae 0.01 4 4 S 645 Aeromonas salmonicida 0.00 1 1 S 644 Aeromonas hydrophila 0.41 294 1 G 225143 Oceanisphaera 0.41 293 293 S 1903694 Oceanisphaera avium 0.03 24 1 G 43947 Tolumonas 0.03 22 21 S 43948 Tolumonas auensis 0.00 1 1 S1 595494 Tolumonas auensis DSM 9187 0.00 1 0 G1 263764 environmental samples 0.00 1 1 S 263765 uncultured Tolumonas sp. 0.01 5 0 G 347533 Zobellella 0.01 5 5 S 347534 Zobellella denitrificans 0.95 677 0 O 2887326 Moraxellales 0.95 677 8 F 468 Moraxellaceae 0.84 597 48 G 469 Acinetobacter 0.72 516 0 G1 909768 Acinetobacter calcoaceticus/baumannii complex 0.51 363 362 S 470 Acinetobacter baumannii 0.00 1 1 S1 1279013 Acinetobacter baumannii PR07 0.21 152 151 S 48296 Acinetobacter pittii 0.00 1 1 S1 871585 Acinetobacter pittii PHEA-2 0.00 1 1 S 106654 Acinetobacter nosocomialis 0.02 14 9 G1 196816 unclassified Acinetobacter 0.00 3 3 S 2004644 Acinetobacter sp. WCHA45 0.00 1 1 S 1827285 Acinetobacter sp. MYb10 0.00 1 1 S 2983215 Acinetobacter sp. ESL0695 0.01 10 10 S 202956 Acinetobacter towneri 0.01 6 6 S 40214 Acinetobacter johnsonii 0.00 2 2 S 106649 Acinetobacter guillouiae 0.00 1 1 S 28090 Acinetobacter lwoffii 0.09 61 1 G 475 Moraxella 0.08 55 55 S 2904120 Moraxella nasibovis 0.00 2 2 S 2904121 Moraxella nasovis 0.00 1 1 S 480 Moraxella catarrhalis 0.00 1 1 S 90241 Moraxella lincolnii 0.00 1 0 G1 2685852 unclassified Moraxella 0.00 1 1 S 2904123 Moraxella sp. ZY210820 0.02 11 8 G 497 Psychrobacter 0.00 3 3 G1 196806 unclassified Psychrobacter 0.61 437 5 O 135622 Alteromonadales 0.26 183 0 F 72275 Alteromonadaceae 0.25 177 0 F1 2903219 Alteromonas/Salinimonas group 0.25 177 0 G 226 Alteromonas 0.25 176 0 G1 2614992 unclassified Alteromonas 0.25 176 176 S 2267264 Alteromonas sp. RKMC-009 0.00 1 1 S 589873 Alteromonas australica 0.00 3 0 G 2894574 Saccharobesus 0.00 3 3 S 2172099 Saccharobesus litoralis 0.00 2 2 G 261825 Agarivorans 0.00 1 1 G 1172191 Catenovulum 0.17 124 0 F 267890 Shewanellaceae 0.17 123 35 G 22 Shewanella 0.06 43 43 S 62322 Shewanella baltica 0.03 23 23 S 712036 Shewanella dokdonensis 0.02 14 14 S 2018305 Shewanella bicestrii 0.01 6 3 G1 196818 unclassified Shewanella 0.00 3 3 S 2601269 Shewanella sp. YLB-09 0.00 2 2 S 2520507 Shewanella maritima 0.00 1 0 G 2547964 Parashewanella 0.00 1 1 S 2547970 Parashewanella tropica 0.17 123 0 F 267888 Pseudoalteromonadaceae 0.16 114 0 G 2834759 Flocculibacter 0.16 114 114 S 2744479 Flocculibacter collagenilyticus 0.01 9 0 G 53246 Pseudoalteromonas 0.01 9 0 G1 194690 unclassified Pseudoalteromonas 0.01 9 9 S 2785910 Pseudoalteromonas sp. A41-2 0.00 1 0 F 267889 Colwelliaceae 0.00 1 0 G 1518149 Thalassotalea 0.00 1 0 G1 2614972 unclassified Thalassotalea 0.00 1 1 S 2769490 Thalassotalea sp. LPB0316 0.00 1 0 F 267891 Moritellaceae 0.00 1 0 G 58050 Moritella 0.00 1 0 S 90736 Moritella marina 0.00 1 1 S1 1202962 Moritella marina ATCC 15381 0.58 413 0 O 72274 Pseudomonadales 0.56 402 5 F 135621 Pseudomonadaceae 0.54 386 51 G 286 Pseudomonas 0.17 124 0 G1 136845 Pseudomonas putida group 0.17 123 123 S 303 Pseudomonas putida 0.00 1 1 S 78327 Pseudomonas mosselii 0.16 113 0 G1 136841 Pseudomonas aeruginosa group 0.16 113 113 S 287 Pseudomonas aeruginosa 0.08 59 0 G1 196821 unclassified Pseudomonas 0.08 56 56 S 2025658 Pseudomonas sp. NS1(2017) 0.00 2 2 S 2954088 Pseudomonas sp. FP2262 0.00 1 1 S 1357074 Pseudomonas sp. LS44 0.03 19 19 S 1198456 Pseudomonas guguanensis 0.01 8 8 S 1302376 Candidatus Pseudomonas adelgestsugas 0.01 6 0 G1 136843 Pseudomonas fluorescens group 0.01 5 0 S 47883 Pseudomonas synxantha 0.01 5 5 S1 96901 Pseudomonas synxantha BG33R 0.00 1 1 S 47878 Pseudomonas azotoformans 0.00 2 2 S 437900 Pseudomonas marincola 0.00 1 1 S 2738125 Pseudomonas hefeiensis 0.00 1 1 S 158627 Pseudomonas graminis 0.00 1 0 G1 136849 Pseudomonas syringae group 0.00 1 0 G2 251695 Pseudomonas syringae group genomosp. 1 0.00 1 0 S 317 Pseudomonas syringae 0.00 1 0 S1 264449 Pseudomonas syringae group pathovars incertae sedis 0.00 1 1 S2 103796 Pseudomonas syringae pv. actinidiae 0.00 1 0 G1 136842 Pseudomonas chlororaphis group 0.00 1 1 S 380021 Pseudomonas protegens 0.01 5 0 G 2758906 Entomomonas 0.01 5 0 G1 2785330 unclassified Entomomonas 0.01 5 5 S 2930213 Entomomonas sp. E2T0 0.01 4 0 G 2901164 Stutzerimonas 0.01 4 0 G1 136846 Stutzerimonas stutzeri group 0.00 3 3 S 74829 Stutzerimonas balearica 0.00 1 0 G2 578833 Stutzerimonas stutzeri subgroup 0.00 1 1 S 316 Stutzerimonas stutzeri 0.00 1 0 G 1649479 Permianibacter 0.00 1 1 S 1510150 Permianibacter aggregans 0.00 1 0 G 1654787 Thiopseudomonas 0.00 1 1 S 1697053 Thiopseudomonas alkaliphila 0.01 10 0 F 2887365 Marinobacteraceae 0.01 10 9 G 2742 Marinobacter 0.00 1 1 S 2603215 Marinobacter fonticola 0.00 1 0 F 3085096 Ketobacteraceae 0.00 1 0 G 2025617 Ketobacter 0.00 1 1 S 1917421 Ketobacter alkanivorans 0.48 346 0 C1 118884 Gammaproteobacteria incertae sedis 0.48 341 0 G 1076625 Candidatus Steffania 0.48 341 341 S 1076626 Candidatus Steffania adelgidicola 0.01 4 0 G 198346 Candidatus Palibaumannia 0.01 4 4 S 186490 Candidatus Palibaumannia cicadellinicola 0.00 1 0 C2 32036 sulfur-oxidizing symbionts 0.00 1 0 G 1541743 Candidatus Ruthturnera 0.00 1 1 S 2738852 Candidatus Ruthia endofausta 0.24 172 0 O 135613 Chromatiales 0.23 163 1 F 1046 Chromatiaceae 0.10 74 2 G 85072 Allochromatium 0.10 72 72 S 553982 Allochromatium tepidum 0.09 63 0 G 156885 Thioflavicoccus 0.09 63 0 S 80679 Thioflavicoccus mobilis 0.09 63 63 S1 765912 Thioflavicoccus mobilis 8321 0.02 11 11 G 1056 Thiocapsa 0.01 6 6 G 61593 Thiorhodovibrio 0.01 6 0 G 2828366 Caldichromatium 0.01 6 6 S 2699430 Caldichromatium japonicum 0.00 1 0 G 67575 Rheinheimera 0.00 1 0 G1 115860 unclassified Rheinheimera 0.00 1 1 S 1763998 Rheinheimera sp. F8 0.00 1 0 G 85073 Thermochromatium 0.00 1 0 S 1050 Thermochromatium tepidum 0.00 1 1 S1 316276 Thermochromatium tepidum ATCC 43061 0.01 9 0 F 72276 Ectothiorhodospiraceae 0.01 6 2 G 1335745 Spiribacter 0.01 4 4 S 2182432 Spiribacter halobius 0.00 3 0 G 233099 Ectothiorhodosinus 0.00 3 3 S 233100 Ectothiorhodosinus mongolicus 0.23 164 8 O 135619 Oceanospirillales 0.15 109 0 F 135620 Oceanospirillaceae 0.10 70 0 G 459520 Neptuniibacter 0.10 70 70 S 651666 Neptuniibacter halophilus 0.03 24 1 G 28253 Marinomonas 0.03 23 23 S 2773454 Marinomonas algicola 0.02 14 14 G 515417 Amphritea 0.00 1 0 G 48075 Marinobacterium 0.00 1 1 S 518898 Marinobacterium sediminicola 0.04 27 1 F 28256 Halomonadaceae 0.02 17 0 G 3137761 Billgrantia 0.02 17 17 S 2497861 Billgrantia tianxiuensis 0.01 5 1 F1 114403 Zymobacter group 0.01 4 0 G 235572 Candidatus Portiera 0.01 4 4 S 91844 Candidatus Portiera aleyrodidarum 0.00 2 0 G 2745 Halomonas 0.00 2 2 S 3031727 Halomonas piscis 0.00 1 1 G 42054 Chromohalobacter 0.00 1 1 G 404432 Salinicola 0.02 13 0 F 2823145 Pleioneaceae 0.02 13 0 G 1502941 Pleionea 0.02 13 13 S 3070815 Pleionea litopenaei 0.01 4 0 F 224379 Hahellaceae 0.01 4 4 G 158481 Hahella 0.00 2 0 F 449732 Litorivicinaceae 0.00 2 0 G 418700 Litorivicinus 0.00 2 2 S 418701 Litorivicinus lipolyticus 0.00 1 0 F 2066474 Endozoicomonadaceae 0.00 1 1 G 305899 Endozoicomonas 0.10 74 0 O 72273 Thiotrichales 0.06 40 24 F 135616 Piscirickettsiaceae 0.01 8 0 G 933 Thiomicrospira 0.01 8 0 G1 2643099 unclassified Thiomicrospira 0.01 8 8 S 3035472 Thiomicrospira sp. R3 0.01 8 0 G 2781121 Thiosulfatimonas 0.01 8 8 S 2675054 Thiosulfatimonas sediminis 0.05 33 0 F 135617 Thiotrichaceae 0.04 31 0 G 1021 Beggiatoa 0.04 31 31 S 288004 Beggiatoa leptomitoformis 0.00 2 2 G 1030 Thiothrix 0.00 1 0 F 2056687 Fastidiosibacteraceae 0.00 1 0 G 2056696 Cysteiniphilum 0.00 1 0 G1 2610889 unclassified Cysteiniphilum 0.00 1 1 S 2975055 Cysteiniphilum sp. QT6929 0.09 65 0 O 135614 Lysobacterales 0.09 63 2 F 32033 Lysobacteraceae 0.05 39 0 G 338 Xanthomonas 0.05 39 39 S 29447 Xanthomonas albilineans 0.02 12 12 G 40323 Stenotrophomonas 0.01 8 0 G 83618 Pseudoxanthomonas 0.01 5 0 S 314722 Pseudoxanthomonas suwonensis 0.01 5 5 S1 743721 Pseudoxanthomonas suwonensis 11-1 0.00 3 0 G1 2645906 unclassified Pseudoxanthomonas 0.00 3 3 S 2969308 Pseudoxanthomonas sp. JBR18 0.00 1 1 G 68 Lysobacter 0.00 1 0 G 2370 Xylella 0.00 1 1 S 2371 Xylella fastidiosa 0.00 2 0 F 1775411 Rhodanobacteraceae 0.00 1 1 G 231454 Dyella 0.00 1 0 G 1453544 Tahibacter 0.00 1 1 S 2976241 Tahibacter amnicola 0.09 64 0 O 118969 Legionellales 0.07 49 0 F 444 Legionellaceae 0.07 49 0 G 445 Legionella 0.06 42 0 S 446 Legionella pneumophila 0.06 42 42 S1 91891 Legionella pneumophila subsp. pneumophila 0.01 4 4 S 450 Legionella longbeachae 0.00 2 2 S 454 Legionella israelensis 0.00 1 1 S 45056 Legionella adelaidensis 0.02 15 9 F 118968 Coxiellaceae 0.01 6 0 G 254245 Aquicella 0.01 6 6 S 254247 Aquicella siphonis 0.04 31 0 O 3084968 Thiohalomonadales 0.04 31 0 F 3084969 Thiohalomonadaceae 0.04 31 0 G 2034504 Sulfurivermis 0.04 31 31 S 1972068 Sulfurivermis fontis 0.03 25 0 O 1706369 Cellvibrionales 0.01 9 0 F 1706373 Microbulbiferaceae 0.01 9 0 G 48073 Microbulbifer 0.01 7 7 S 86173 Microbulbifer elongatus 0.00 2 0 G1 2619833 unclassified Microbulbifer 0.00 2 2 S 2745199 Microbulbifer sp. YPW1 0.01 8 0 F 1706375 Spongiibacteraceae 0.01 7 0 G 1084558 Oceanicoccus 0.01 7 7 S 716816 Oceanicoccus sagamiensis 0.00 1 1 G 630749 Spongiibacter 0.01 4 0 F 1706371 Cellvibrionaceae 0.01 4 0 G 10 Cellvibrio 0.01 4 2 G1 2624793 unclassified Cellvibrio 0.00 2 2 S 1987723 Cellvibrio sp. PSBB006 0.01 4 3 F 1706372 Halieaceae 0.00 1 0 G 393661 Congregibacter 0.00 1 0 S 393662 Congregibacter litoralis 0.00 1 1 S1 314285 Congregibacter litoralis KT71 0.01 8 0 O 135618 Methylococcales 0.01 7 0 F 403 Methylococcaceae 0.00 2 0 G 1808977 Candidatus Methylospira 0.00 2 2 S 1808979 Candidatus Methylospira mobilis 0.00 2 0 G 3135206 Candidatus Methylocalor 0.00 2 2 S 3108543 Candidatus Methylocalor cossyra 0.00 1 1 G 416 Methylomonas 0.00 1 0 G 429 Methylobacter 0.00 1 0 G1 2635283 unclassified Methylobacter 0.00 1 1 S 2839024 Methylobacter sp. S3L5C 0.00 1 0 G 1760987 Methylomagnum 0.00 1 1 S 1760988 Methylomagnum ishizawai 0.00 1 0 F 1486721 Methylothermaceae 0.00 1 1 G 1486720 Methylomarinovum 0.01 7 0 O 135615 Cardiobacteriales 0.01 7 0 F 868 Cardiobacteriaceae 0.01 4 0 G 2717 Cardiobacterium 0.01 4 0 G1 2648856 unclassified Cardiobacterium 0.01 4 4 S 2866573 Cardiobacterium sp. Marseille-Q4385 0.00 3 0 G 869 Dichelobacter 0.00 3 3 S 870 Dichelobacter nodosus 0.01 5 0 O 1240482 Orbales 0.01 5 0 F 1240483 Orbaceae 0.01 5 0 G 2894762 Zophobihabitans 0.01 5 5 S 1635327 Zophobihabitans entericus 0.00 1 0 O 1775403 Nevskiales 0.00 1 0 F 568386 Nevskiaceae 0.00 1 0 G 413435 Solimonas 0.00 1 0 G1 2637139 unclassified Solimonas 0.00 1 1 S 2303331 Solimonas sp. K1W22B-7 0.00 1 0 O 2975284 Candidatus Comchoanobacterales 0.00 1 0 F 2975285 Candidatus Comchoanobacteraceae 0.00 1 0 G 2975286 Candidatus Comchoanobacter 0.00 1 1 S 2919598 Candidatus Comchoanobacter bicostacola 0.00 1 0 C1 33811 unclassified Gammaproteobacteria 0.00 1 0 S 883811 Isorropodon fossajaponicum symbiont 0.00 1 1 S1 1235284 Isorropodon fossajaponicum endosymbiont JTNG4 0.00 1 0 O 742030 Salinisphaerales 0.00 1 0 F 742031 Salinisphaeraceae 0.00 1 0 G 180541 Salinisphaera 0.00 1 0 G1 2649847 unclassified Salinisphaera 0.00 1 1 S 2183911 Salinisphaera sp. LB1 1.59 1140 27 C 28211 Alphaproteobacteria 1.18 841 7 O 356 Hyphomicrobiales 0.67 480 33 F 119045 Methylobacteriaceae 0.52 371 332 G 407 Methylobacterium 0.03 19 0 S 31998 Methylobacterium radiotolerans 0.03 19 19 S1 426355 Methylobacterium radiotolerans JCM 2831 0.02 12 6 G1 2615210 unclassified Methylobacterium 0.01 6 6 S 426117 Methylobacterium sp. 4-46 0.01 4 4 S 410 Methylobacterium organophilum 0.00 3 3 S 570505 Methylobacterium bullatum 0.00 1 1 S 270351 Methylobacterium aquaticum 0.11 76 73 G 186650 Microvirga 0.00 3 3 S 1882682 Microvirga ossetica 0.29 207 0 F 118882 Brucellaceae 0.29 207 190 F1 2826938 Brucella/Ochrobactrum group 0.02 17 11 G 234 Brucella 0.00 3 3 S 94625 Brucella intermedia 0.00 2 0 G1 2632610 unclassified Brucella 0.00 2 2 S 2886044 Brucella sp. JSBI001 0.00 1 0 S 235 Brucella abortus 0.00 1 0 S1 1567505 Brucella abortus bv. 9 0.00 1 1 S2 520455 Brucella abortus bv. 9 str. C68 0.06 45 0 F 2813035 Parvibaculaceae 0.06 44 0 G 256616 Parvibaculum 0.06 44 0 S 256618 Parvibaculum lavamentivorans 0.06 44 44 S1 402881 Parvibaculum lavamentivorans DS-1 0.00 1 0 G 2838250 Kaustia 0.00 1 1 S 2593653 Kaustia mangrovi 0.06 40 2 F 82115 Rhizobiaceae 0.04 27 17 F1 227290 Rhizobium/Agrobacterium group 0.01 9 2 G 379 Rhizobium 0.01 5 0 S 56730 Rhizobium gallicum 0.01 5 0 S1 142627 Rhizobium gallicum bv. gallicum 0.01 5 5 S2 1041138 Rhizobium gallicum bv. gallicum R602sp 0.00 1 0 S 384 Rhizobium leguminosarum 0.00 1 1 S1 386 Rhizobium leguminosarum bv. trifolii 0.00 1 1 S 2081791 Rhizobium ruizarguesonis 0.00 1 0 G 1612611 Pararhizobium 0.00 1 1 G1 2643050 unclassified Pararhizobium 0.02 11 0 F1 227292 Sinorhizobium/Ensifer group 0.02 11 0 G 28105 Sinorhizobium 0.02 11 2 S 382 Sinorhizobium meliloti 0.01 7 7 S1 1041157 Sinorhizobium meliloti WSM1022 0.00 1 1 S1 693982 Sinorhizobium meliloti AK83 0.00 1 1 S1 1235461 Sinorhizobium meliloti GR4 0.03 21 1 F 255475 Aurantimonadaceae 0.03 20 20 G 414371 Aureimonas 0.02 11 0 F 69277 Phyllobacteriaceae 0.01 6 0 G 2911176 Aquibium 0.01 6 6 S 1670800 Aquibium oceanicum 0.01 5 0 G 68287 Mesorhizobium 0.00 3 3 S 2725666 Mesorhizobium terrae 0.00 2 0 G1 325217 unclassified Mesorhizobium 0.00 1 1 S 2744522 Mesorhizobium sp. L-8-3 0.00 1 1 S 2584466 Mesorhizobium sp. 8 0.01 8 0 F 45401 Hyphomicrobiaceae 0.01 5 4 G 81 Hyphomicrobium 0.00 1 1 S 53399 Hyphomicrobium denitrificans 0.00 2 0 G 1484898 Methyloceanibacter 0.00 2 0 G1 2617503 unclassified Methyloceanibacter 0.00 2 2 S 2170729 Methyloceanibacter sp. wino2 0.00 1 0 G 1485594 Methyloligella 0.00 1 0 G1 2625955 unclassified Methyloligella 0.00 1 1 S 2742204 Methyloligella sp. GL2 0.01 7 0 O1 119042 Hyphomicrobiales incertae sedis 0.01 6 0 G 1734920 Pseudorhodoplanes 0.01 6 6 S 1235591 Pseudorhodoplanes sinuspersici 0.00 1 0 G 212791 Enhydrobacter 0.00 1 0 G1 2632691 unclassified Enhydrobacter 0.00 1 1 S 1894999 Enhydrobacter sp. 0.01 6 0 F 2831106 Devosiaceae 0.01 4 0 G 3064792 Mariluticola 0.01 4 4 S 2909283 Mariluticola halotolerans 0.00 2 0 G 46913 Devosia 0.00 2 2 S 2774137 Devosia rhizoryzae 0.00 3 1 F 2821832 Stappiaceae 0.00 2 0 G 150830 Roseibium 0.00 2 0 G1 1936170 environmental samples 0.00 2 2 S 1936171 uncultured Roseibium sp. 0.00 2 0 F 772 Bartonellaceae 0.00 2 0 G 773 Bartonella 0.00 1 1 S 803 Bartonella quintana 0.00 1 0 G1 2645622 unclassified Bartonella 0.00 1 1 S 3057550 Bartonella sp. TP 0.00 1 1 F 335928 Xanthobacteraceae 0.00 1 0 F 2843308 Pleomorphomonadaceae 0.00 1 0 G 261933 Pleomorphomonas 0.00 1 0 G1 442120 environmental samples 0.00 1 1 S 442121 uncultured Pleomorphomonas sp. 0.00 1 0 F 3142785 Terrirubraceae 0.00 1 0 G 3142786 Terrirubrum 0.00 1 1 S 2895980 Terrarubrum flagellatum 0.00 1 0 F 41294 Nitrobacteraceae 0.00 1 1 G 374 Bradyrhizobium 0.17 125 0 O 204441 Rhodospirillales 0.11 79 0 F 2844601 Stellaceae 0.11 79 0 G 93 Stella 0.11 79 79 S 94 Stella humosa 0.05 37 0 F 2690195 Elioraeaceae 0.05 37 0 G 457933 Elioraea 0.05 37 37 S 2843330 Elioraea tepida 0.00 3 0 F 41295 Rhodospirillaceae 0.00 3 0 G 1263978 Candidatus Endolissoclinum 0.00 3 3 S 1263979 Candidatus Endolissoclinum faulkneri 0.00 3 0 F 3031144 Dongiaceae 0.00 3 3 G 2705399 Hypericibacter 0.00 2 0 F 433 Acetobacteraceae 0.00 1 0 G 512381 Acidisoma 0.00 1 0 G1 2634065 unclassified Acidisoma 0.00 1 1 S 3040935 Acidisoma sp. PAMC 29798 0.00 1 0 G 1602345 Parasaccharibacter 0.00 1 1 S 1510841 Parasaccharibacter apium 0.00 1 0 F 2829815 Azospirillaceae 0.00 1 1 G 191 Azospirillum 0.06 45 1 O 204457 Sphingomonadales 0.04 26 1 F 335929 Erythrobacteraceae 0.02 16 16 G 2800681 Aurantiacibacter 0.01 6 0 G 1295327 Croceicoccus 0.01 6 6 S 450378 Croceicoccus marinus 0.00 2 0 G 2676755 Croceibacterium 0.00 2 0 G1 2676756 unclassified Croceibacterium 0.00 2 2 S 3121290 Croceibacterium sp. TMG7-5b_MA50 0.00 1 0 G 2800680 Alteriqipengyuania 0.00 1 1 S 3053610 Alteriqipengyuania flavescens 0.03 18 1 F 41297 Sphingomonadaceae 0.02 11 2 G 13687 Sphingomonas 0.01 8 8 S 3132797 Sphingomonas flavescens 0.00 1 1 S 2071607 Sphingomonas rhizophila 0.01 6 1 G 165696 Novosphingobium 0.01 5 5 S 13688 Novosphingobium capsulatum 0.04 32 0 O 204458 Caulobacterales 0.04 32 1 F 76892 Caulobacteraceae 0.04 29 27 G 41275 Brevundimonas 0.00 1 1 S 172043 Brevundimonas nasdae 0.00 1 0 G1 2622653 unclassified Brevundimonas 0.00 1 1 S 2560058 Brevundimonas sp. Bb-A 0.00 1 0 G 20 Phenylobacterium 0.00 1 0 S 284016 Phenylobacterium zucineum 0.00 1 1 S1 450851 Phenylobacterium zucineum HLK1 0.00 1 1 G 75 Caulobacter 0.03 21 2 O 204455 Rhodobacterales 0.03 19 1 F 31989 Paracoccaceae 0.02 16 14 G 265 Paracoccus 0.00 1 0 S 34003 Paracoccus aminophilus 0.00 1 1 S1 1367847 Paracoccus aminophilus JCM 7686 0.00 1 1 S 659350 Paracoccus stylophorae 0.00 1 0 G 34008 Rhodovulum 0.00 1 0 G1 2631432 unclassified Rhodovulum 0.00 1 1 S 1564506 Rhodovulum sp. P5 0.00 1 0 G 2944826 Pontibrevibacter 0.00 1 1 S 2758038 Pontibrevibacter nitratireducens 0.03 21 0 O 2800060 Hyphomonadales 0.03 21 0 F 69657 Hyphomonadaceae 0.03 21 21 G 85 Hyphomonas 0.03 20 0 O 2066490 Emcibacterales 0.03 20 0 F 2066491 Emcibacteraceae 0.03 20 0 G 2943291 Pseudemcibacter 0.03 20 20 S 2857064 Pseudemcibacter aquimaris 0.01 6 0 O 1921002 Holosporales 0.01 6 0 F 44746 Holosporaceae 0.01 6 0 G 2654634 Candidatus Hydrogenosomobacter 0.01 6 6 S 2558174 Candidatus Hydrogenosomobacter endosymbioticus 0.00 2 0 O 766 Rickettsiales 0.00 2 0 F 775 Rickettsiaceae 0.00 2 0 F1 33988 Rickettsieae 0.00 2 0 G 780 Rickettsia 0.00 2 0 G1 114277 spotted fever group 0.00 2 0 S 781 Rickettsia conorii 0.00 2 2 S1 369822 Rickettsia conorii subsp. raoultii 1.15 822 283 C 28216 Betaproteobacteria 0.61 434 24 O 80840 Burkholderiales 0.28 197 3 F 80864 Comamonadaceae 0.26 187 186 G 80865 Delftia 0.00 1 1 S 180282 Delftia tsuruhatensis 0.01 4 1 G 283 Comamonas 0.00 3 3 S 2743470 Comamonas antarctica 0.00 1 1 G 28065 Rhodoferax 0.00 1 1 G 34072 Variovorax 0.00 1 0 G 1436289 Candidatus Symbiobacter 0.00 1 0 S 1436290 Candidatus Symbiobacter mobilis 0.00 1 1 S1 946483 Candidatus Symbiobacter mobilis CR 0.24 175 5 F 119060 Burkholderiaceae 0.10 68 13 G 48736 Ralstonia 0.08 55 0 G1 3116862 Ralstonia solanacearum species complex 0.08 55 55 S 305 Ralstonia solanacearum 0.05 39 4 G 32008 Burkholderia 0.03 22 0 G1 111527 pseudomallei group 0.02 14 0 S 57975 Burkholderia thailandensis 0.02 14 14 S1 1249664 Burkholderia thailandensis 34 0.01 8 8 S 28450 Burkholderia pseudomallei 0.01 9 0 G1 87882 Burkholderia cepacia complex 0.01 9 9 S 488447 Burkholderia contaminans 0.01 4 0 G1 2613784 unclassified Burkholderia 0.01 4 4 S 1494466 Burkholderia sp. FERM BP-3421 0.03 25 0 G 2038280 Robbsia 0.03 25 0 G1 2636574 unclassified Robbsia 0.03 25 25 S 3149231 Robbsia sp. KACC 23696 0.03 20 1 G 106589 Cupriavidus 0.02 16 16 S 164546 Cupriavidus taiwanensis 0.00 2 2 S 367825 Cupriavidus malaysiensis 0.00 1 1 S 119219 Cupriavidus metallidurans 0.01 8 0 G 1822464 Paraburkholderia 0.01 8 8 S 2571748 Paraburkholderia acidisoli 0.01 7 0 G 47670 Lautropia 0.01 7 7 S 47671 Lautropia mirabilis 0.00 3 0 G 2571159 Mycetohabitans 0.00 3 3 S 417203 Mycetohabitans endofungorum 0.03 24 8 F 75682 Oxalobacteraceae 0.01 7 1 F1 2895353 Telluria group 0.01 6 1 G 149698 Massilia 0.01 5 0 G1 2609279 unclassified Massilia 0.00 3 3 S 3126507 Massilia sp. W12 0.00 1 1 S 1707785 Massilia sp. WG5 0.00 1 1 S 3064278 Massilia sp. R2A-15 0.01 5 1 G 963 Herbaspirillum 0.01 4 4 S 863372 Herbaspirillum huttiense 0.00 2 0 G 401469 Undibacterium 0.00 2 2 G1 2630295 unclassified Undibacterium 0.00 1 1 G 29580 Janthinobacterium 0.00 1 0 G 1229970 Glaciimonas 0.00 1 0 G1 2644401 unclassified Glaciimonas 0.00 1 1 S 2807626 Glaciimonas sp. PAMC28666 0.01 6 0 F 506 Alcaligenaceae 0.01 4 0 G 1472344 Basilea 0.01 4 0 S 1472345 Basilea psittacipulmonis 0.01 4 4 S1 1072685 Basilea psittacipulmonis DSM 24701 0.00 2 0 G 152267 Pigmentiphaga 0.00 2 2 S 1940612 Pigmentiphaga aceris 0.01 6 0 O1 224471 Burkholderiales genera incertae sedis 0.01 6 0 G 32012 Thiomonas 0.01 5 5 S 926 Thiomonas intermedia 0.00 1 0 G1 2625466 unclassified Thiomonas 0.00 1 1 S 1050370 Thiomonas sp. X19 0.00 2 0 F 2975441 Sphaerotilaceae 0.00 1 0 G 34102 Sphaerotilus 0.00 1 1 S 2914710 Sphaerotilus microaerophilus 0.00 1 0 G 93681 Roseateles 0.00 1 1 S 76731 Roseateles depolymerans 0.05 38 0 C1 119066 Betaproteobacteria incertae sedis 0.05 34 0 G 1301080 Candidatus Nasuia 0.05 34 34 S 1160784 Candidatus Nasuia deltocephalinicola 0.01 4 0 G 1381133 Candidatus Profftella 0.01 4 4 S 2661583 Candidatus Profftella armatura (Diaphorina cf. continua) 0.05 35 1 O 32003 Nitrosomonadales 0.03 19 0 F 206379 Nitrosomonadaceae 0.03 19 2 G 914 Nitrosomonas 0.02 12 0 S 916 Nitrosomonas eutropha 0.02 12 12 S1 335283 Nitrosomonas eutropha C91 0.01 5 0 G1 2609265 unclassified Nitrosomonas 0.01 5 5 S 261292 Nitrosomonas sp. Is79A3 0.02 14 2 F 32011 Methylophilaceae 0.01 9 0 G 359407 Methylotenera 0.01 9 0 S 359408 Methylotenera mobilis 0.01 9 9 S1 583345 Methylotenera mobilis JLW8 0.00 2 0 G 1679002 Candidatus Methylopumilus 0.00 2 2 S 1581680 Candidatus Methylopumilus turicensis 0.00 1 1 G 81682 Methylovorus 0.00 1 0 F 2008793 Sterolibacteriaceae 0.00 1 0 G 3050898 Sulfuricystis 0.00 1 1 S 2211108 Sulfuricystis multivorans 0.04 28 0 O 206351 Neisseriales 0.03 23 3 F 481 Neisseriaceae 0.01 10 2 G 482 Neisseria 0.00 2 2 S 485 Neisseria gonorrhoeae 0.00 2 2 S 487 Neisseria meningitidis 0.00 1 1 S 486 Neisseria lactamica 0.00 1 1 S 607712 Neisseria shayeganii 0.00 1 1 S 267212 Neisseria bacilliformis 0.00 1 1 S 1853278 Neisseria chenwenguii 0.01 9 0 G 2593687 Aquella 0.01 9 9 S 2067065 Aquella oligotrophica 0.00 1 0 G 71 Simonsiella 0.00 1 1 S 72 Simonsiella muelleri 0.00 3 0 F 2897176 Aquaspirillaceae 0.00 3 0 G 168470 Laribacter 0.00 3 1 S 168471 Laribacter hongkongensis 0.00 2 2 S1 557598 Laribacter hongkongensis HLHK9 0.00 2 2 F 2897177 Chitinibacteraceae 0.01 4 0 O 206389 Rhodocyclales 0.00 3 0 F 2008794 Zoogloeaceae 0.00 3 3 G 12960 Azoarcus 0.00 1 0 F 2008795 Azonexaceae 0.00 1 0 G 73029 Dechloromonas 0.00 1 0 G1 2633351 unclassified Dechloromonas 0.00 1 1 S 447588 Dechloromonas sp. A34 0.02 14 0 C 1807140 Acidithiobacillia 0.02 14 0 O 225057 Acidithiobacillales 0.02 14 0 F 225058 Acidithiobacillaceae 0.02 14 14 G 119977 Acidithiobacillus 14.73 10527 24 D1 1783272 Terrabacteria group 13.40 9582 27 P 1239 Bacillota 13.24 9464 887 C 91061 Bacilli 10.01 7159 79 O 186826 Lactobacillales 9.18 6564 0 F 81852 Enterococcaceae 9.18 6560 3 G 1350 Enterococcus 8.98 6418 6417 S 1351 Enterococcus faecalis 0.00 1 1 S1 1201292 Enterococcus faecalis ATCC 29212 0.17 120 120 S 1352 Enterococcus faecium 0.02 12 11 S 1354 Enterococcus hirae 0.00 1 1 S1 768486 Enterococcus hirae ATCC 9790 0.01 6 6 S 1353 Enterococcus gallinarum 0.00 1 1 S 44008 Enterococcus cecorum 0.01 4 0 G 51668 Tetragenococcus 0.00 3 3 S 51669 Tetragenococcus halophilus 0.00 1 1 S 526944 Tetragenococcus osmophilus 0.32 229 26 F 33958 Lactobacillaceae 0.07 47 0 G 2930384 Periweissella 0.07 47 47 S 2506420 Periweissella cryptocerci 0.03 24 2 G 1578 Lactobacillus 0.01 7 0 S 1584 Lactobacillus delbrueckii 0.01 7 0 S1 1585 Lactobacillus delbrueckii subsp. bulgaricus 0.01 7 7 S2 321956 Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 0.01 7 7 S 1579 Lactobacillus acidophilus 0.01 5 5 S 1587 Lactobacillus helveticus 0.00 1 0 G1 2620435 unclassified Lactobacillus 0.00 1 1 S 2879107 Lactobacillus sp. IBH004 0.00 1 1 S 47770 Lactobacillus crispatus 0.00 1 1 S 147802 Lactobacillus iners 0.03 23 0 G 2767842 Lactiplantibacillus 0.03 19 19 S 1589 Lactiplantibacillus pentosus 0.01 4 4 S 1590 Lactiplantibacillus plantarum 0.03 19 0 G 2767886 Levilactobacillus 0.02 12 12 S 1580 Levilactobacillus brevis 0.01 7 7 S 2292255 Levilactobacillus suantsaii 0.02 16 1 G 2767887 Ligilactobacillus 0.01 4 4 S 1606 Ligilactobacillus aviarius 0.00 3 0 S 1622 Ligilactobacillus murinus 0.00 3 3 S1 1235801 Ligilactobacillus murinus ASF361 0.00 3 2 S 1624 Ligilactobacillus salivarius 0.00 1 1 S1 1194971 Ligilactobacillus salivarius str. Ren 0.00 2 2 S 1601 Ligilactobacillus agilis 0.00 2 2 S 1605 Ligilactobacillus animalis 0.00 1 1 S 89059 Ligilactobacillus acidipiscis 0.02 14 14 G 2767893 Lentilactobacillus 0.02 13 0 G 2759736 Lacticaseibacillus 0.01 10 8 S 1597 Lacticaseibacillus paracasei 0.00 2 2 S1 113557 Lacticaseibacillus paracasei subsp. tolerans 0.00 3 3 S 3025672 Lacticaseibacillus pabuli 0.01 9 4 G 2742598 Limosilactobacillus 0.00 3 3 S 1598 Limosilactobacillus reuteri 0.00 2 2 S 1613 Limosilactobacillus fermentum 0.01 8 2 G 2767885 Latilactobacillus 0.01 5 5 S 1599 Latilactobacillus sakei 0.00 1 1 S 28038 Latilactobacillus curvatus 0.01 8 2 G 2767881 Fructilactobacillus 0.01 6 6 S 1625 Fructilactobacillus sanfranciscensis 0.01 6 4 G 1243 Leuconostoc 0.00 1 1 S 1246 Leuconostoc lactis 0.00 1 1 S 1252 Leuconostoc carnosum 0.01 5 3 G 46255 Weissella 0.00 2 2 S 1249 Weissella paramesenteroides 0.00 3 2 G 2767877 Apilactobacillus 0.00 1 1 S 2923364 Apilactobacillus apisilvae 0.00 2 0 G 2767878 Bombilactobacillus 0.00 2 2 S 1303590 Bombilactobacillus bombi 0.00 2 0 G 2767874 Acetilactobacillus 0.00 2 2 S 1720083 Acetilactobacillus jinshanensis 0.00 1 0 G 2767890 Paucilactobacillus 0.00 1 1 S 1296540 Paucilactobacillus nenjiangensis 0.00 1 0 G 1253 Pediococcus 0.00 1 1 S 51663 Pediococcus damnosus 0.00 1 0 G 2767879 Companilactobacillus 0.00 1 0 S 1602 Companilactobacillus alimentarius 0.00 1 1 S1 1423720 Companilactobacillus alimentarius DSM 20249 0.00 1 0 G 46254 Oenococcus 0.00 1 0 S 336988 Oenococcus kitaharae 0.00 1 1 S1 1045004 Oenococcus kitaharae DSM 17330 0.31 223 0 F 1300 Streptococcaceae 0.28 199 94 G 1301 Streptococcus 0.06 44 38 S 1308 Streptococcus thermophilus 0.01 6 6 S1 322159 Streptococcus thermophilus LMD-9 0.02 13 13 S 1314 Streptococcus pyogenes 0.01 9 0 G1 671232 Streptococcus anginosus group 0.01 9 9 S 1328 Streptococcus anginosus 0.01 7 4 S 1311 Streptococcus agalactiae 0.00 3 3 S1 1203670 Streptococcus agalactiae GD201008-001 0.01 7 6 S 1313 Streptococcus pneumoniae 0.00 1 1 S1 869311 Streptococcus pneumoniae SPN032672 0.01 4 4 S 68892 Streptococcus infantis 0.01 4 4 S 1310 Streptococcus sobrinus 0.00 2 2 S 1348 Streptococcus parauberis 0.00 2 2 S 1811193 Streptococcus pantholopis 0.00 2 2 S 1326 Streptococcus acidominimus 0.00 2 2 S 2490633 Streptococcus periodonticum 0.00 2 2 S 2021971 Streptococcus respiraculi 0.00 1 0 G1 2608887 unclassified Streptococcus 0.00 1 1 S 3098075 Streptococcus sp. S1 0.00 1 1 S 1111760 Streptococcus troglodytae 0.00 1 1 S 1345 Streptococcus ferus 0.00 1 1 S 102886 Streptococcus didelphis 0.00 1 0 G1 119603 Streptococcus dysgalactiae group 0.00 1 1 S 1334 Streptococcus dysgalactiae 0.00 1 1 S 400065 Streptococcus merionis 0.00 1 1 S 1304 Streptococcus salivarius 0.03 24 1 G 1357 Lactococcus 0.03 22 22 S 1359 Lactococcus cremoris 0.00 1 1 S 1363 Lactococcus garvieae 0.05 39 3 F 186828 Carnobacteriaceae 0.02 16 0 G 117563 Granulicatella 0.02 14 14 S 46124 Granulicatella adiacens 0.00 2 2 S 137732 Granulicatella elegans 0.02 14 0 G 191769 Marinilactibacillus 0.02 14 0 G1 2632303 unclassified Marinilactibacillus 0.02 14 14 S 1911586 Marinilactibacillus sp. 15R 0.01 4 0 G 82800 Desemzia 0.01 4 4 S 82801 Desemzia incerta 0.00 1 0 G 2747 Carnobacterium 0.00 1 1 S 2751 Carnobacterium maltaromaticum 0.00 1 0 G 82802 Trichococcus 0.00 1 0 G1 189664 environmental samples 0.00 1 1 S 189665 uncultured Trichococcus sp. 0.03 25 1 F 186827 Aerococcaceae 0.02 12 0 G 2862144 Ruoffia 0.02 12 12 S 87458 Ruoffia tabacinasalis 0.01 10 5 G 1375 Aerococcus 0.01 4 4 S 128944 Aerococcus urinaehominis 0.00 1 1 S 87541 Aerococcus christensenii 0.00 2 0 G 66831 Facklamia 0.00 2 2 S 178214 Facklamia hominis 1.98 1418 58 O 1385 Bacillales 1.07 767 79 F 186817 Bacillaceae 0.65 465 6 G 1386 Bacillus 0.47 334 8 G1 653685 Bacillus subtilis group 0.36 258 0 G2 1938374 Bacillus amyloliquefaciens group 0.34 246 244 S 492670 Bacillus velezensis 0.00 2 2 S1 1385727 Bacillus velezensis NAU-B3 0.02 11 11 S 1390 Bacillus amyloliquefaciens 0.00 1 1 S 659243 Bacillus siamensis 0.08 57 52 S 1423 Bacillus subtilis 0.01 4 4 S1 135461 Bacillus subtilis subsp. subtilis 0.00 1 1 S1 86029 Bacillus subtilis subsp. natto 0.01 10 10 S 483913 Bacillus inaquosorum 0.00 1 1 S 96241 Bacillus spizizenii 0.10 69 6 G1 86661 Bacillus cereus group 0.03 25 21 S 1428 Bacillus thuringiensis 0.00 1 1 S1 1423143 Bacillus thuringiensis Bt18247 0.00 1 1 S1 1217737 Bacillus thuringiensis HD-789 0.00 1 1 S1 180850 Bacillus thuringiensis serovar indiana 0.00 1 1 S1 412694 Bacillus thuringiensis str. Al Hakam 0.02 17 17 S 1392 Bacillus anthracis 0.02 11 9 S 1396 Bacillus cereus 0.00 2 2 S1 1003239 Bacillus cereus C1L 0.01 5 3 S 1405 Bacillus mycoides 0.00 2 2 S1 315730 Bacillus mycoides KBAB4 0.00 2 2 S 64104 Bacillus pseudomycoides 0.00 2 0 G2 2750818 unclassified Bacillus cereus group 0.00 2 2 S 1892404 Bacillus sp. ABP14 0.00 1 1 S 2026186 Bacillus paranthracis 0.06 41 0 G1 185979 unclassified Bacillus (in: firmicutes) 0.04 28 28 S 2841656 Bacillus sp. ZHX3 0.01 7 7 S 467262 Bacillus sp. T3 0.01 6 6 S 2709784 Bacillus sp. KH172YL63 0.02 14 0 G1 1792192 Bacillus altitudinis complex 0.02 14 14 S 293387 Bacillus altitudinis 0.00 1 1 S 561879 Bacillus safensis 0.09 62 41 G 2837504 Heyndrickxia 0.03 20 20 S 1398 Heyndrickxia coagulans 0.00 1 1 S 38875 Heyndrickxia oleronia 0.04 32 31 G 1055323 Aeribacillus 0.00 1 0 G1 2640495 unclassified Aeribacillus 0.00 1 1 S 2954683 Aeribacillus sp. FSL K6-8210 0.04 28 0 G 2893060 Alkalihalophilus 0.04 28 28 S 79885 Alkalihalophilus pseudofirmus 0.04 28 12 G 400634 Lysinibacillus 0.02 11 11 S 2086577 Lysinibacillus timonensis 0.01 4 4 S 2590012 Lysinibacillus agricola 0.00 1 1 S 1421 Lysinibacillus sphaericus 0.02 15 15 G 2893057 Shouchella 0.02 13 0 G 2005375 Alkalicoccus 0.02 13 13 S 1667239 Alkalicoccus halolimnae 0.01 9 0 G 2685905 Salicibibacter 0.01 9 9 S 2743001 Salicibibacter cibi 0.01 8 0 G 175304 Lentibacillus 0.01 5 5 S 1472767 Lentibacillus amyloliquefaciens 0.00 2 0 G1 2614679 unclassified Lentibacillus 0.00 2 2 S 2518176 Lentibacillus sp. CBA3610 0.00 1 1 S 2911514 Lentibacillus daqui 0.01 5 1 G 129337 Geobacillus 0.00 2 0 S 33940 Geobacillus thermodenitrificans 0.00 2 2 S1 420246 Geobacillus thermodenitrificans NG80-2 0.00 1 1 S 860353 Geobacillus proteiniphilus 0.00 1 1 S 1921421 Geobacillus genomosp. 3 0.01 4 0 G 351195 Salimicrobium 0.01 4 0 G1 2619739 unclassified Salimicrobium 0.01 4 4 S 3095364 Salimicrobium sp. PL1-032A 0.00 3 0 G 45667 Halobacillus 0.00 2 2 S 45668 Halobacillus litoralis 0.00 1 1 S 2932258 Halobacillus shinanisalinarum 0.00 3 0 G 84406 Virgibacillus 0.00 3 3 S 447199 Virgibacillus salarius 0.00 3 0 G 2800373 Priestia 0.00 3 3 S 1404 Priestia megaterium 0.00 2 0 G 2675229 Peribacillus 0.00 2 2 S 264697 Peribacillus muralis 0.00 1 0 G 2893055 Halalkalibacterium (ex Joshi et al. 2022) 0.00 1 0 S 86665 Halalkalibacterium halodurans 0.00 1 1 S1 272558 Halalkalibacterium halodurans C-125 0.00 1 1 G 1221880 Psychrobacillus 0.00 1 0 G 1433999 Domibacillus 0.00 1 0 G1 2632383 unclassified Domibacillus 0.00 1 1 S 3077789 Domibacillus sp. DTU_2020_1001157_1_SI_ALB_TIR_016 0.00 1 0 G 2837506 Niallia 0.00 1 0 G1 2837522 unclassified Niallia 0.00 1 1 S 3082444 Niallia sp. XMNu-256 0.00 1 0 G 2785518 Radiobacillus 0.00 1 1 S 2594883 Radiobacillus deserti 0.00 1 0 G 459532 Terribacillus 0.00 1 1 S 361277 Terribacillus saccharophilus 0.00 1 0 G 379065 Caldalkalibacillus 0.00 1 0 S 296745 Caldalkalibacillus thermarum 0.00 1 1 S1 986075 Caldalkalibacillus thermarum TA2.A1 0.00 1 1 G 182709 Oceanobacillus 0.59 423 0 F 90964 Staphylococcaceae 0.59 422 75 G 1279 Staphylococcus 0.44 316 316 S 1280 Staphylococcus aureus 0.01 8 6 S 1282 Staphylococcus epidermidis 0.00 2 2 S1 176280 Staphylococcus epidermidis ATCC 12228 0.01 7 7 S 70255 Staphylococcus condimenti 0.01 5 5 S 1290 Staphylococcus hominis 0.01 4 4 S 29378 Staphylococcus arlettae 0.00 2 2 S 1283 Staphylococcus haemolyticus 0.00 1 1 S 29388 Staphylococcus capitis 0.00 1 1 S 985002 Staphylococcus argenteus 0.00 1 1 S 170573 Staphylococcus pettenkoferi 0.00 1 1 S 2044912 Staphylococcus debuckii 0.00 1 1 S 28035 Staphylococcus lugdunensis 0.00 1 0 G 45669 Salinicoccus 0.00 1 0 G1 2628837 unclassified Salinicoccus 0.00 1 1 S 3136731 Salinicoccus sp. Bachu38 0.12 86 1 F 186820 Listeriaceae 0.12 85 4 G 1637 Listeria 0.09 66 0 S 1638 Listeria ivanovii 0.09 66 0 S1 202751 Listeria ivanovii subsp. ivanovii 0.09 66 66 S2 881621 Listeria ivanovii subsp. ivanovii PAM 55 0.01 8 0 G1 2642072 unclassified Listeria 0.01 8 8 S 1844999 Listeria sp. PSOL-1 0.01 6 6 S 1639 Listeria monocytogenes 0.00 1 1 S 1497681 Listeria newyorkensis 0.05 36 0 F 186822 Paenibacillaceae 0.02 16 0 G 44249 Paenibacillus 0.01 6 6 S 1406 Paenibacillus polymyxa 0.00 3 3 S 2509456 Paenibacillus protaetiae 0.00 3 3 S 116718 Paenibacillus azoreducens 0.00 2 0 G1 185978 unclassified Paenibacillus 0.00 1 1 S 715179 Paenibacillus sp. sptzw28 0.00 1 1 S 2921361 Paenibacillus sp. FSL E2-0178 0.00 1 1 S 562959 Paenibacillus cellulositrophicus 0.00 1 0 S 1464 Paenibacillus larvae 0.00 1 1 S1 147375 Paenibacillus larvae subsp. larvae 0.02 13 0 G 329857 Cohnella 0.02 13 13 S 2507935 Cohnella abietis 0.01 5 0 F1 85151 Aneurinibacillus group 0.01 5 3 G 55079 Aneurinibacillus 0.00 2 2 S 1500254 Aneurinibacillus soli 0.00 2 1 G 55080 Brevibacillus 0.00 1 1 S 1393 Brevibacillus brevis 0.03 24 0 F 186818 Planococcaceae 0.03 18 17 G 160795 Ureibacillus 0.00 1 1 S 367743 Ureibacillus thermophilus 0.00 3 0 G 889388 Chryseomicrobium 0.00 3 0 G1 2625558 unclassified Chryseomicrobium 0.00 3 3 S 2921704 Chryseomicrobium sp. FSL W7-1435 0.00 1 0 G 1372 Planococcus 0.00 1 0 G1 2662419 unclassified Planococcus (in: firmicutes) 0.00 1 1 S 2058136 Planococcus sp. MB-3u-03 0.00 1 1 G 1569 Sporosarcina 0.00 1 0 G 651660 Paenisporosarcina 0.00 1 1 S 2320858 Paenisporosarcina cavernae 0.01 10 0 F 186823 Alicyclobacillaceae 0.01 10 0 G 29330 Alicyclobacillus 0.01 10 10 S 2931921 Alicyclobacillus mengziensis 0.01 9 0 F 539738 Gemellaceae 0.01 9 9 G 1378 Gemella 0.00 3 0 F 186821 Sporolactobacillaceae 0.00 3 1 G 2077 Sporolactobacillus 0.00 2 2 S 269673 Sporolactobacillus terrae 0.00 2 0 O1 539002 Bacillales incertae sedis 0.00 2 0 F 539003 Bacillales Family X. Incertae Sedis 0.00 2 0 G 1609627 Hydrogenibacillus 0.00 2 0 G1 2773237 unclassified Hydrogenibacillus 0.00 2 2 S 2866627 Hydrogenibacillus sp. N12 0.06 44 0 C 186801 Clostridia 0.05 34 0 O 186802 Eubacteriales 0.02 15 0 F 31979 Clostridiaceae 0.02 15 0 G 1485 Clostridium 0.01 7 7 S 1716543 Clostridium thermarum 0.01 6 6 S 1502 Clostridium perfringens 0.00 2 0 G1 2614128 unclassified Clostridium 0.00 2 2 S 2483110 Clostridium sp. JN-1 0.01 7 0 F 186807 Peptococcaceae 0.01 7 0 G 2924872 Acididesulfobacillus 0.01 7 7 S 1561005 Acididesulfobacillus acetoxydans 0.01 5 0 F 186806 Eubacteriaceae 0.01 5 5 G 33951 Acetobacterium 0.01 4 0 F 216572 Oscillospiraceae 0.00 3 0 G 1263 Ruminococcus 0.00 2 2 S 1161942 Ruminococcus champanellensis 0.00 1 1 S 2564099 Ruminococcus bovis 0.00 1 1 G 2892396 Vescimonas 0.00 1 1 F 3085642 Butyricicoccaceae 0.00 1 0 O1 538999 Eubacteriales incertae sedis 0.00 1 0 F 539000 Clostridiales Family XVII. Incertae Sedis 0.00 1 1 G 73918 Thermaerobacter 0.00 1 0 F 2937909 Desulfitobacteriaceae 0.00 1 1 G 56112 Dehalobacter 0.00 3 0 O 53433 Halanaerobiales 0.00 3 0 F 53434 Halobacteroidaceae 0.00 2 0 G 42417 Halobacteroides 0.00 2 0 S 42422 Halobacteroides halobius 0.00 2 2 S1 748449 Halobacteroides halobius DSM 5150 0.00 1 0 G 28186 Acetohalobium 0.00 1 0 S 28187 Acetohalobium arabaticum 0.00 1 1 S1 574087 Acetohalobium arabaticum DSM 5501 0.00 3 1 O 3085636 Lachnospirales 0.00 2 0 F 3018741 Cellulosilyticaceae 0.00 2 2 G 698776 Cellulosilyticum 0.00 2 0 O 68295 Thermoanaerobacterales 0.00 1 0 F 186814 Thermoanaerobacteraceae 0.00 1 0 G 249529 Caldanaerobacter 0.00 1 0 S 911092 Caldanaerobacter subterraneus 0.00 1 0 S1 119072 Caldanaerobacter subterraneus subsp. tengcongensis 0.00 1 1 S2 273068 Caldanaerobacter subterraneus subsp. tengcongensis MB4 0.00 1 0 F 543372 Thermoanaerobacterales Family IV. Incertae Sedis 0.00 1 0 G 252965 Mahella 0.00 1 0 S 252966 Mahella australiensis 0.00 1 1 S1 697281 Mahella australiensis 50-1 BON 0.00 2 0 O 3085656 Monoglobales 0.00 2 0 F 3085657 Monoglobaceae 0.00 2 0 G 2039302 Monoglobus 0.00 2 2 S 1981510 Monoglobus pectinilyticus 0.04 27 0 C 909932 Negativicutes 0.04 26 0 O 1843489 Veillonellales 0.04 26 0 F 31977 Veillonellaceae 0.03 25 23 G 29465 Veillonella 0.00 2 2 S 29466 Veillonella parvula 0.00 1 0 G 906 Megasphaera 0.00 1 1 S 1675036 Megasphaera hexanoica 0.00 1 0 O 909929 Selenomonadales 0.00 1 0 F 1843490 Sporomusaceae 0.00 1 0 G 81463 Anaeromusa 0.00 1 0 G1 673272 environmental samples 0.00 1 1 S 673273 uncultured Anaeromusa sp. 0.03 20 0 C 1737404 Tissierellia 0.03 20 0 O 1737405 Tissierellales 0.03 20 0 F 1570339 Peptoniphilaceae 0.03 18 0 G 162289 Peptoniphilus 0.02 13 13 S 54005 Peptoniphilus harei 0.01 5 5 S 3036303 Peptoniphilus genitalis 0.00 2 1 G 165779 Anaerococcus 0.00 1 0 G1 2614126 unclassified Anaerococcus 0.00 1 1 S 3036300 Anaerococcus sp. Marseille-Q7828 1.19 850 0 P 201174 Actinomycetota 1.17 833 51 C 1760 Actinomycetes 0.83 595 10 O 85009 Propionibacteriales 0.81 577 19 F 31957 Propionibacteriaceae 0.77 552 9 G 1912216 Cutibacterium 0.69 495 491 S 1747 Cutibacterium acnes 0.01 4 4 S1 1122995 Cutibacterium acnes DSM 1897 0.06 46 46 S 33011 Cutibacterium granulosum 0.00 1 1 S 33010 Cutibacterium avidum 0.00 1 1 S 2559073 Cutibacterium modestum 0.00 2 0 G 1912215 Acidipropionibacterium 0.00 2 2 S 1749 Acidipropionibacterium jensenii 0.00 1 1 G 29404 Microlunatus 0.00 1 1 G 72763 Tessaracoccus 0.00 1 0 G 1911549 Raineyella 0.00 1 1 S 2662261 Raineyella fluvialis 0.00 1 0 G 2919589 Vaginimicrobium 0.00 1 1 S 1871034 Vaginimicrobium propionicum 0.01 8 0 F 85015 Nocardioidaceae 0.01 6 6 G 2040 Aeromicrobium 0.00 2 2 G 1839 Nocardioides 0.14 100 2 O 85007 Mycobacteriales 0.09 62 0 F 1653 Corynebacteriaceae 0.09 62 25 G 1716 Corynebacterium 0.02 12 12 S 61592 Corynebacterium durum 0.01 8 8 S 1737425 Corynebacterium provencense 0.01 6 0 S 1717 Corynebacterium diphtheriae 0.01 6 6 S1 257309 Corynebacterium diphtheriae NCTC 13129 0.00 3 3 S 43771 Corynebacterium urealyticum 0.00 2 0 S 1718 Corynebacterium glutamicum 0.00 2 2 S1 1079988 Corynebacterium glutamicum ATCC 14067 0.00 2 2 S 35757 Corynebacterium cystitidis 0.00 1 0 G1 2624378 unclassified Corynebacterium 0.00 1 1 S 1487956 Corynebacterium sp. ATCC 6931 0.00 1 1 S 38289 Corynebacterium jeikeium 0.00 1 1 S 38284 Corynebacterium accolens 0.00 1 1 S 2768834 Corynebacterium zhongnanshanii 0.02 16 0 F 85025 Nocardiaceae 0.02 16 3 G 1827 Rhodococcus 0.02 12 12 S 37919 Rhodococcus opacus 0.00 1 0 G1 2840174 Rhodococcus erythropolis group 0.00 1 1 S 334542 Rhodococcus qingshengii 0.02 11 1 F 1762 Mycobacteriaceae 0.01 9 0 G 1763 Mycobacterium 0.01 7 0 G1 77643 Mycobacterium tuberculosis complex 0.01 7 7 S 1773 Mycobacterium tuberculosis 0.00 2 0 G1 2993898 Mycobacterium ulcerans group 0.00 2 2 S 133549 Mycobacterium shottsii 0.00 1 0 G 1866885 Mycolicibacterium 0.00 1 1 S 1286180 Mycolicibacterium sediminis 0.01 9 0 F 2805586 Lawsonellaceae 0.01 9 0 G 1847725 Lawsonella 0.01 9 9 S 1528099 Lawsonella clevelandensis 0.06 46 0 O 85006 Micrococcales 0.06 43 0 F 1268 Micrococcaceae 0.03 22 7 G 32207 Rothia 0.01 7 7 S 2047 Rothia dentocariosa 0.01 4 4 S 43675 Rothia mucilaginosa 0.00 3 3 S 172042 Rothia aeria 0.00 1 1 S 169480 Rothia amarae 0.02 13 13 G 57493 Kocuria 0.01 5 0 G 1663 Arthrobacter 0.01 5 0 G1 235627 unclassified Arthrobacter 0.01 4 4 S 2991715 Arthrobacter sp. ATA002 0.00 1 1 S 2828862 Arthrobacter sp. Helios 0.00 1 1 G 57494 Nesterenkonia 0.00 1 1 G 1269 Micrococcus 0.00 1 0 G 1742991 Pseudoglutamicibacter 0.00 1 1 S 98671 Pseudoglutamicibacter albus 0.00 1 0 F 85016 Cellulomonadaceae 0.00 1 0 G 1707 Cellulomonas 0.00 1 1 S 2968084 Cellulomonas chengniuliangii 0.00 1 0 F 1331736 Ruaniaceae 0.00 1 0 G 2828348 Occultella 0.00 1 1 S 2675754 Occultella kanbiaonis 0.00 1 0 F 85023 Microbacteriaceae 0.00 1 0 F1 1655488 Luna cluster 0.00 1 0 F2 1655489 Luna-1 subcluster 0.00 1 0 G 529881 Aquiluna 0.00 1 0 G1 2617988 unclassified Aquiluna 0.00 1 1 S 1855377 Candidatus Aquiluna sp. UB-MaderosW2red 0.03 18 0 O 85011 Kitasatosporales 0.03 18 6 F 2062 Streptomycetaceae 0.02 12 1 G 1883 Streptomyces 0.01 7 3 G1 2593676 unclassified Streptomyces 0.00 1 1 S 2933779 Streptomyces sp. WAC00303 0.00 1 1 S 2987533 Streptomyces sp. BPPL-273 0.00 1 1 S 2594460 Streptomyces sp. S1A1-8 0.00 1 1 S 2730915 Streptomyces sp. Z423-1 0.00 1 1 S 146923 Streptomyces parvulus 0.00 1 1 S 35621 Streptomyces mobaraensis 0.00 1 1 S 1437453 Streptomyces leeuwenhoekii 0.00 1 1 S 68286 Streptomyces zaomyceticus 0.02 16 0 O 85004 Bifidobacteriales 0.02 16 0 F 31953 Bifidobacteriaceae 0.02 16 10 G 1678 Bifidobacterium 0.01 4 0 S 216816 Bifidobacterium longum 0.01 4 4 S1 1682 Bifidobacterium longum subsp. infantis 0.00 1 0 G1 2608897 unclassified Bifidobacterium 0.00 1 1 S 2983212 Bifidobacterium sp. ESL0682 0.00 1 1 S 1689 Bifidobacterium dentium 0.01 4 0 O 2037 Actinomycetales 0.01 4 0 F 2049 Actinomycetaceae 0.01 4 3 G 2529408 Schaalia 0.00 1 1 S 1660 Schaalia odontolytica 0.00 2 0 O 1643682 Geodermatophilales 0.00 2 1 F 85030 Geodermatophilaceae 0.00 1 0 G 1860 Geodermatophilus 0.00 1 0 S 1861 Geodermatophilus obscurus 0.00 1 1 S1 526225 Geodermatophilus obscurus DSM 43160 0.00 1 0 O 1217098 Jiangellales 0.00 1 0 F 1217100 Jiangellaceae 0.00 1 1 G 281472 Jiangella 0.02 13 0 C 1497346 Thermoleophilia 0.02 13 12 O 588673 Solirubrobacterales 0.00 1 0 F 320583 Conexibacteraceae 0.00 1 0 G 191494 Conexibacter 0.00 1 1 G1 2627773 unclassified Conexibacter 0.00 2 0 C 84992 Acidimicrobiia 0.00 2 0 O 84993 Acidimicrobiales 0.00 2 0 F 2448023 Ilumatobacteraceae 0.00 2 0 G 682522 Ilumatobacter 0.00 2 0 S 467094 Ilumatobacter coccineus 0.00 2 2 S1 1313172 Ilumatobacter coccineus YM16-304 0.00 2 0 C 84998 Coriobacteriia 0.00 2 0 O 84999 Coriobacteriales 0.00 1 0 F 84107 Coriobacteriaceae 0.00 1 0 G 102106 Collinsella 0.00 1 1 S 74426 Collinsella aerofaciens 0.00 1 0 F 1643824 Atopobiaceae 0.00 1 1 G 2082587 Parolsenella 0.05 33 0 P 200795 Chloroflexota 0.02 15 0 C 32061 Chloroflexia 0.02 15 0 O 32064 Chloroflexales 0.02 15 0 O1 1508594 Chloroflexineae 0.02 15 0 F 1106 Chloroflexaceae 0.02 15 1 G 1107 Chloroflexus 0.02 14 0 S 152260 Chloroflexus aggregans 0.02 14 14 S1 326427 Chloroflexus aggregans DSM 9485 0.02 15 0 C 301297 Dehalococcoidia 0.02 15 0 C1 648176 SAR202 cluster 0.02 15 0 O 3143247 Candidatus Lucifugimonadales 0.02 15 0 F 3143248 Candidatus Lucifugimonadaceae 0.02 15 0 G 3143249 Candidatus Lucifugimonas 0.02 15 15 S 3038979 Candidatus Lucifugimonas marina 0.00 3 0 C 475962 Caldilineae 0.00 3 0 O 475963 Caldilineales 0.00 3 0 F 475964 Caldilineaceae 0.00 3 0 G 233191 Caldilinea 0.00 3 0 S 133453 Caldilinea aerophila 0.00 3 3 S1 926550 Caldilinea aerophila DSM 14535 = NBRC 104270 0.02 17 3 P 544448 Mycoplasmatota 0.02 11 0 O 2790996 Mycoplasmoidales 0.02 11 0 F 2790998 Mycoplasmoidaceae 0.02 11 11 G 2129 Ureaplasma 0.00 2 0 C 31969 Mollicutes 0.00 1 0 O 2085 Mycoplasmatales 0.00 1 0 F 2092 Mycoplasmataceae 0.00 1 0 G 2093 Mycoplasma 0.00 1 1 S 754516 Mycoplasma miroungirhinis 0.00 1 1 O 186328 Entomoplasmatales 0.00 1 0 C 1912503 Candidatus Izimaplasma 0.00 1 0 O 2975519 Candidatus Izemoplasmatales 0.00 1 0 F 2975520 Candidatus Izemoplasmataceae 0.00 1 0 G 2975521 Candidatus Xianfuyuplasma 0.00 1 1 S 2782163 Candidatus Xianfuyuplasma coldseepsis 0.02 15 0 D2 1798711 Cyanobacteriota/Melainabacteria group 0.02 15 1 P 1117 Cyanobacteriota 0.02 14 3 C 3028117 Cyanophyceae 0.01 6 2 O 1161 Nostocales 0.00 2 0 F 2661849 Calotrichaceae 0.00 2 0 G 1186 Calothrix 0.00 2 1 G1 2619626 unclassified Calothrix 0.00 1 1 S 2005462 Calothrix sp. NIES-3974 0.00 1 0 F 1162 Nostocaceae 0.00 1 0 G 98443 Richelia 0.00 1 0 S 1357545 Richelia sinica 0.00 1 1 S1 1357546 Richelia sinica FACHB-800 0.00 1 0 F 1892259 Aphanizomenonaceae 0.00 1 0 G 752201 Sphaerospermopsis 0.00 1 0 S 984207 Sphaerospermopsis torques-reginae 0.00 1 1 S1 984208 Sphaerospermopsis torques-reginae ITEP-024 0.01 4 0 C1 1301283 Oscillatoriophycideae 0.00 3 0 O 1150 Oscillatoriales 0.00 3 0 F 2934961 Sirenicapillariaceae 0.00 3 0 G 2596745 Limnospira 0.00 3 0 S 147322 Limnospira indica 0.00 3 3 S1 2760438 Limnospira indica BM01 0.00 1 0 O 1118 Chroococcales 0.00 1 0 F 1890449 Microcystaceae 0.00 1 0 G 1125 Microcystis 0.00 1 0 G1 2643300 unclassified Microcystis 0.00 1 1 S 1967666 Microcystis sp. MC19 0.00 1 1 O 1890424 Synechococcales 0.01 4 0 P 67819 Armatimonadota 0.00 3 0 C 1663419 Fimbriimonadia 0.00 3 0 O 1663425 Fimbriimonadales 0.00 3 0 F 1663426 Fimbriimonadaceae 0.00 3 0 G 1005038 Fimbriimonas 0.00 3 0 S 1005039 Fimbriimonas ginsengisoli 0.00 3 3 S1 661478 Fimbriimonas ginsengisoli Gsoil 348 0.00 1 0 C 1077257 Chthonomonadia 0.00 1 0 O 1077263 Chthonomonadales 0.00 1 0 F 1077264 Chthonomonadaceae 0.00 1 0 G 1077265 Chthonomonas 0.00 1 0 S 454171 Chthonomonas calidirosea 0.00 1 1 S1 1303518 Chthonomonas calidirosea T49 0.00 2 0 P 1297 Deinococcota 0.00 2 0 C 188787 Deinococci 0.00 1 0 O 118964 Deinococcales 0.00 1 0 F 183710 Deinococcaceae 0.00 1 1 G 1298 Deinococcus 0.00 1 0 O 2762275 Trueperales 0.00 1 0 F 332247 Trueperaceae 0.00 1 0 G 332248 Truepera 0.00 1 1 S 332249 Truepera radiovictrix 3.68 2629 0 D1 1783270 FCB group 3.67 2624 0 D2 68336 Bacteroidota/Chlorobiota group 3.65 2609 0 P 976 Bacteroidota 3.57 2553 0 C 768503 Cytophagia 3.57 2553 0 O 768507 Cytophagales 3.55 2540 0 F 89373 Cytophagaceae 3.55 2540 0 G 107 Spirosoma 3.55 2539 2539 S 2666025 Spirosoma endbachense 0.00 1 1 S 2735870 Spirosoma taeanense 0.02 13 0 F 2762286 Fulvivirgaceae 0.02 13 0 G 1433993 Chryseolinea 0.02 13 13 S 2321403 Chryseolinea soli 0.06 45 0 C 117743 Flavobacteriia 0.06 45 0 O 200644 Flavobacteriales 0.06 45 1 F 49546 Flavobacteriaceae 0.04 27 0 G 286104 Winogradskyella 0.04 27 27 S 2686077 Winogradskyella forsetii 0.01 8 1 G 237 Flavobacterium 0.00 3 3 S 3034146 Flavobacterium panacagri 0.00 2 1 S 96345 Flavobacterium psychrophilum 0.00 1 1 S1 1452724 Flavobacterium psychrophilum FPG3 0.00 2 0 G1 196869 unclassified Flavobacterium 0.00 1 1 S 2654325 Flavobacterium sp. xlx-214 0.00 1 1 S 2732161 Flavobacterium sp. IMCC34852 0.01 4 0 G 762641 Muriicola 0.01 4 4 S 2507538 Muriicola soli 0.00 2 0 G 326319 Dokdonia 0.00 2 0 G1 2615033 unclassified Dokdonia 0.00 2 2 S 983548 Dokdonia sp. 4H-3-7-5 0.00 1 0 G 1287916 Euzebyella 0.00 1 1 S 1761453 Euzebyella marina 0.00 1 0 F1 2907139 Altibacter/Constantimarinum group 0.00 1 0 G 2907134 Constantimarinum 0.00 1 1 S 2562285 Constantimarinum furrinae 0.00 1 1 G 292691 Christiangramia 0.01 10 0 C 200643 Bacteroidia 0.01 10 0 O 171549 Bacteroidales 0.01 8 2 F 171552 Prevotellaceae 0.00 3 0 G 2974251 Segatella 0.00 3 2 S 165179 Segatella copri 0.00 1 1 S1 537011 Segatella copri DSM 18205 0.00 2 0 G 2974257 Hoylesella 0.00 2 2 S 28127 Hoylesella buccalis 0.00 1 0 G 2884814 Pseudoprevotella 0.00 1 1 S 2133944 Pseudoprevotella muciniphila 0.00 1 0 F 815 Bacteroidaceae 0.00 1 0 G 816 Bacteroides 0.00 1 1 S 818 Bacteroides thetaiotaomicron 0.00 1 0 F 2760872 Tenuifilaceae 0.00 1 0 G 2760873 Tenuifilum 0.00 1 1 S 2590900 Tenuifilum thalassicum 0.00 1 0 C 117747 Sphingobacteriia 0.00 1 0 O 200666 Sphingobacteriales 0.00 1 0 F 84566 Sphingobacteriaceae 0.00 1 1 G 28453 Sphingobacterium 0.02 15 0 P 1853220 Rhodothermota 0.02 15 0 C 1853222 Rhodothermia 0.02 15 3 O 1853224 Rhodothermales 0.02 11 0 F 563843 Rhodothermaceae 0.02 11 0 G 2893090 Rhodocaloribacter 0.02 11 11 S 2558931 Rhodocaloribacter litoris 0.00 1 0 F 1853225 Salinibacteraceae 0.00 1 0 G 146918 Salinibacter 0.00 1 1 S 146919 Salinibacter ruber 0.01 4 0 P 456828 Candidatus Cloacimonadota 0.01 4 0 C 3039863 Candidatus Cloacimonadia 0.01 4 0 O 3039864 Candidatus Cloacimonadales 0.01 4 0 F 3039865 Candidatus Cloacimonadaceae 0.01 4 0 G 456826 Candidatus Cloacimonas 0.01 4 0 S 456827 Candidatus Cloacimonas acidaminovorans 0.01 4 4 S1 459349 Candidatus Cloacimonas acidaminovorans str. Evry 0.00 1 0 P 142182 Gemmatimonadota 0.00 1 0 C 219685 Gemmatimonadia 0.00 1 0 O 219686 Gemmatimonadales 0.00 1 0 F 219687 Gemmatimonadaceae 0.00 1 1 G 173479 Gemmatimonas 0.28 200 0 P 508458 Synergistota 0.28 200 0 C 649775 Synergistia 0.28 200 0 O 649776 Synergistales 0.28 200 0 F 649777 Synergistaceae 0.28 199 0 G 81411 Aminomonas 0.28 199 0 S 81412 Aminomonas paucivorans 0.28 199 199 S1 584708 Aminomonas paucivorans DSM 12260 0.00 1 0 G 508459 Cloacibacillus 0.00 1 1 S 1197717 Cloacibacillus porcorum 0.10 75 0 P 29547 Campylobacterota 0.10 75 0 C 3031852 Epsilonproteobacteria 0.10 75 0 O 213849 Campylobacterales 0.10 69 0 F 72293 Helicobacteraceae 0.10 69 2 G 209 Helicobacter 0.09 65 65 S 213 Helicobacter cinaedi 0.00 2 2 S 210 Helicobacter pylori 0.00 3 0 F 72294 Campylobacteraceae 0.00 3 0 G 194 Campylobacter 0.00 3 3 S 449520 Campylobacter canadensis 0.00 2 0 F 2771471 Sulfurimonadaceae 0.00 2 0 G 202746 Sulfurimonas 0.00 2 2 G1 2623549 unclassified Sulfurimonas 0.00 1 0 F 2808963 Arcobacteraceae 0.00 1 0 G 2321115 Halarcobacter 0.00 1 1 S 663364 Halarcobacter bivalviorum 0.07 47 0 D1 1783257 PVC group 0.03 21 0 P 74201 Verrucomicrobiota 0.02 17 0 C 414999 Opitutia 0.02 15 1 O 415001 Puniceicoccales 0.02 14 0 F 3056371 Coraliomargaritaceae 0.02 14 0 G 442430 Coraliomargarita 0.02 14 0 S 395922 Coraliomargarita akajimensis 0.02 14 14 S1 583355 Coraliomargarita akajimensis DSM 45221 0.00 2 0 O 415000 Opitutales 0.00 2 2 F 134623 Opitutaceae 0.01 4 0 C 203494 Verrucomicrobiia 0.00 3 0 O 48461 Verrucomicrobiales 0.00 3 0 F 203557 Verrucomicrobiaceae 0.00 2 0 G 2735 Verrucomicrobium 0.00 2 0 G1 2625155 unclassified Verrucomicrobium 0.00 2 2 S 1882831 Verrucomicrobium sp. GAS474 0.00 1 0 G 1348508 Roseimicrobium 0.00 1 0 G1 2711230 unclassified Roseimicrobium 0.00 1 1 S 2711231 Roseimicrobium sp. ORNL1 0.00 1 0 O 134621 Limisphaerales 0.00 1 0 F 3050006 Fontisphaeraceae 0.00 1 0 G 3050007 Fontisphaera 0.00 1 1 S 2974023 Fontisphaera persica 0.03 21 1 P 203682 Planctomycetota 0.02 13 1 C 203683 Planctomycetia 0.01 6 0 O 2691356 Isosphaerales 0.01 6 1 F 1763524 Isosphaeraceae 0.01 5 0 G 1763521 Paludisphaera 0.01 5 5 S 1387353 Paludisphaera borealis 0.01 5 0 O 112 Planctomycetales 0.01 5 0 F 126 Planctomycetaceae 0.00 3 0 G 2795777 Maioricimonas 0.00 3 3 S 2528026 Maioricimonas rarisocia 0.00 1 0 G 2795865 Thalassoglobus 0.00 1 1 S 2527994 Thalassoglobus polymorphus 0.00 1 0 G 3132181 Planctoellipticum 0.00 1 1 S 3064265 Planctoellipticum variicoloris 0.00 1 0 O 2691354 Pirellulales 0.00 1 0 F 2691358 Thermoguttaceae 0.00 1 0 G 1676125 Thermogutta 0.00 1 1 S 1331910 Thermogutta terrifontis 0.01 7 0 C 666505 Phycisphaerae 0.01 7 0 O 666506 Phycisphaerales 0.01 7 0 F 666507 Phycisphaeraceae 0.01 7 0 G 2913022 Mucisphaera 0.01 7 7 S 2527982 Mucisphaera calidilacus 0.01 5 0 P 134625 Kiritimatiellota 0.01 5 0 C 2907184 Tichowtungiia 0.01 5 0 O 2907185 Tichowtungiales 0.01 5 0 F 2907186 Tichowtungiaceae 0.01 5 0 G 2907187 Tichowtungia 0.01 5 5 S 2697043 Tichowtungia aerotolerans 0.06 42 10 P 200940 Thermodesulfobacteriota 0.01 10 0 C 3031449 Desulfovibrionia 0.01 10 0 O 213115 Desulfovibrionales 0.01 10 0 F 194924 Desulfovibrionaceae 0.01 7 7 G 2035811 Pseudodesulfovibrio 0.00 3 0 G 3126915 Taurinivorans 0.00 3 3 S 2787751 Taurinivorans muris 0.01 8 0 C 3024408 Syntrophobacteria 0.01 8 0 O 213462 Syntrophobacterales 0.01 8 0 F 213465 Syntrophobacteraceae 0.01 8 0 G 29526 Syntrophobacter 0.01 8 0 S 119484 Syntrophobacter fumaroxidans 0.01 8 8 S1 335543 Syntrophobacter fumaroxidans MPOB 0.01 8 0 C 3031451 Desulfobulbia 0.01 8 0 O 3024411 Desulfobulbales 0.01 7 0 F 213121 Desulfobulbaceae 0.01 7 0 G 893 Desulfobulbus 0.01 7 7 S 1986146 Desulfobulbus oralis 0.00 1 0 F 2886822 Desulfocapsaceae 0.00 1 0 G 51194 Desulfofustis 0.00 1 1 S 2740163 Desulfofustis limnaeus 0.01 5 0 C 3031651 Desulfuromonadia 0.01 5 1 O 69541 Desulfuromonadales 0.01 4 0 F 213421 Desulfuromonadaceae 0.01 4 4 G 890 Desulfuromonas 0.00 1 0 C 67799 Thermodesulfobacteria 0.00 1 1 O 188710 Thermodesulfobacteriales 0.02 16 0 D1 2323 Bacteria incertae sedis 0.02 16 0 D2 1783234 Bacteria candidate phyla 0.02 13 13 P 95818 Candidatus Saccharibacteria 0.00 2 0 D3 95901 Candidatus Dependentiae 0.00 2 0 C 2497643 Candidatus Babeliae 0.00 2 0 O 2497644 Candidatus Babeliales 0.00 2 0 F 2953756 Candidatus Chromulinivoraceae 0.00 2 0 G 2953757 Candidatus Chromulinivorax 0.00 2 2 S 2066483 Candidatus Chromulinivorax destructor 0.00 1 0 P 1383058 Candidatus Fervidibacterota 0.00 1 0 G 1448928 Candidatus Fervidibacter 0.00 1 1 S 1448929 Candidatus Fervidibacter sacchari 0.01 9 0 P 203691 Spirochaetota 0.01 9 0 C 203692 Spirochaetia 0.01 9 0 O 136 Spirochaetales 0.01 8 0 F 2845253 Treponemataceae 0.01 8 0 G 157 Treponema 0.01 6 6 S 162 Treponema phagedenis 0.00 2 2 S 165 Treponema saccharophilum 0.00 1 0 F 1643685 Borreliaceae 0.00 1 0 G 64895 Borreliella 0.00 1 1 S 100177 Borreliella lusitaniae 0.01 9 0 P 57723 Acidobacteriota 0.01 8 0 C 533205 Holophagae 0.01 8 0 O 574975 Holophagales 0.01 8 0 F 574976 Holophagaceae 0.01 7 7 G 44675 Geothrix 0.00 1 0 G 35838 Holophaga 0.00 1 0 G1 89282 environmental samples 0.00 1 1 S 188475 uncultured Holophaga sp. 0.00 1 0 C 1813735 Vicinamibacteria 0.00 1 0 O 2910145 Vicinamibacterales 0.00 1 0 F 2211325 Vicinamibacteraceae 0.00 1 1 G 2004797 Luteitalea 0.01 8 0 P 3018035 Bdellovibrionota 0.01 7 0 C 3031419 Bacteriovoracia 0.01 7 0 O 2024979 Bacteriovoracales 0.01 7 0 F 263369 Bacteriovoracaceae 0.01 7 0 G 263370 Peredibacter 0.01 7 7 S 28202 Peredibacter starrii 0.00 1 0 C 3031418 Bdellovibrionia 0.00 1 0 O 213481 Bdellovibrionales 0.00 1 0 F 213483 Pseudobdellovibrionaceae 0.00 1 0 G 2862745 Pseudobdellovibrio 0.00 1 0 S 453816 Pseudobdellovibrio exovorus 0.00 1 1 S1 1184267 Pseudobdellovibrio exovorus JSS 0.01 7 0 P 2818505 Myxococcota 0.01 6 0 P1 3031711 Polyangia 0.01 6 0 O 3031712 Polyangiales 0.00 3 0 F 49 Polyangiaceae 0.00 3 0 G 50 Chondromyces 0.00 3 3 S 52 Chondromyces crocatus 0.00 3 0 F 1055686 Sandaracinaceae 0.00 3 0 G 1055688 Sandaracinus 0.00 3 3 S 927083 Sandaracinus amylolyticus 0.00 1 0 C 32015 Myxococcia 0.00 1 0 O 29 Myxococcales 0.00 1 0 O1 80811 Cystobacterineae 0.00 1 0 F 31 Myxococcaceae 0.00 1 0 G 32 Myxococcus 0.00 1 1 S 1297742 Myxococcus hansupus 0.01 6 0 P 2138240 Coprothermobacterota 0.01 6 0 C 2138243 Coprothermobacteria 0.01 6 0 O 2138246 Coprothermobacterales 0.01 6 0 F 2138247 Coprothermobacteraceae 0.01 6 0 G 68335 Coprothermobacter 0.01 6 0 S 35786 Coprothermobacter proteolyticus 0.01 6 6 S1 309798 Coprothermobacter proteolyticus DSM 5265 0.00 2 0 P 200918 Thermotogota 0.00 2 0 C 188708 Thermotogae 0.00 2 0 O 1643946 Kosmotogales 0.00 2 0 F 1643948 Kosmotogaceae 0.00 2 0 G 651456 Kosmotoga 0.00 2 0 S 651457 Kosmotoga olearia 0.00 2 2 S1 521045 Kosmotoga olearia TBF 19.5.1 0.00 2 0 P 32066 Fusobacteriota 0.00 2 0 C 203490 Fusobacteriia 0.00 2 0 O 203491 Fusobacteriales 0.00 2 0 F 1129771 Leptotrichiaceae 0.00 2 0 G 32067 Leptotrichia 0.00 1 1 S 157691 Leptotrichia shahii 0.00 1 1 S 554406 Leptotrichia hongkongensis 0.00 1 0 D1 68525 delta/epsilon subdivisions 0.00 1 0 C 28221 Deltaproteobacteria 0.00 1 0 O 1779134 Bradymonadales 0.00 1 0 F 1779135 Bradymonadaceae 0.00 1 0 G 1779136 Bradymonas 0.00 1 1 S 1548548 Bradymonas sediminis 0.00 1 0 P 200783 Aquificota 0.00 1 0 C 187857 Aquificia 0.00 1 0 O 32069 Aquificales 0.00 1 1 F 64898 Aquificaceae 0.00 1 0 D 10239 Viruses 0.00 1 0 C 2840056 Naldaviricetes 0.00 1 0 O 2840070 Lefavirales 0.00 1 0 F 10442 Baculoviridae 0.00 1 0 G 558017 Betabaculovirus 0.00 1 0 S 3051997 Betabaculovirus chofumiferanae 0.00 1 1 S1 56947 Choristoneura fumiferana granulovirus