0.05 36 36 U 0 unclassified 99.95 71433 2 R 1 root 99.95 71431 0 R1 131567 cellular organisms 99.95 71431 16376 D 2 Bacteria 55.76 39854 410 P 1224 Pseudomonadota 52.78 37721 2431 C 1236 Gammaproteobacteria 40.99 29295 2371 O 91347 Enterobacterales 33.93 24248 2738 F 543 Enterobacteriaceae 16.76 11980 209 G 561 Escherichia 16.33 11669 10992 S 562 Escherichia coli 0.21 152 27 S1 83334 Escherichia coli O157:H7 0.13 95 95 S2 155864 Escherichia coli O157:H7 str. EDL933 0.03 24 24 S2 502346 Escherichia coli O157:H7 str. TW14588 0.01 6 6 S2 1328859 Escherichia coli O157:H7 str. SS17 0.16 114 114 S1 316435 Escherichia coli Nissle 1917 0.14 101 101 S1 2079157 Escherichia coli O2:H1 0.08 58 58 S1 1322345 Escherichia coli ATCC 25922 0.08 57 57 S1 655817 Escherichia coli ABU 83972 0.08 54 54 S1 2874053 Escherichia coli O25:H1 0.07 51 51 S1 331112 Escherichia coli HS 0.07 47 47 S1 1446600 Escherichia coli O15:H18 0.03 21 0 S1 1038927 Escherichia coli O104:H4 0.03 21 21 S2 1134782 Escherichia coli O104:H4 str. 2009EL-2050 0.02 14 14 S1 244320 Escherichia coli O55:H7 0.01 4 4 S1 362663 Escherichia coli 536 0.01 4 4 S1 439855 Escherichia coli SMS-3-5 0.07 50 50 S 1499973 Escherichia marmotae 0.05 36 36 S 208962 Escherichia albertii 0.02 16 16 S 564 Escherichia fergusonii 5.25 3749 50 G 590 Salmonella 4.98 3559 874 S 28901 Salmonella enterica 3.76 2685 162 S1 59201 Salmonella enterica subsp. enterica 1.04 743 743 S2 2583588 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- 0.68 487 0 S2 58096 Salmonella enterica subsp. enterica serovar Bareilly 0.64 455 455 S3 1182177 Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000752 0.03 21 21 S3 1182172 Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000661 0.02 11 11 S3 1173427 Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000189 0.43 308 308 S2 600 Salmonella enterica subsp. enterica serovar Thompson 0.39 276 18 S2 611 Salmonella enterica subsp. enterica serovar Heidelberg 0.34 245 245 S3 1124936 Salmonella enterica subsp. enterica serovar Heidelberg str. 41578 0.02 13 13 S3 1160717 Salmonella enterica subsp. enterica serovar Heidelberg str. B182 0.30 214 214 S2 2579247 Salmonella enterica subsp. enterica serovar Rough O:-:- 0.23 166 166 S2 149539 Salmonella enterica subsp. enterica serovar Enteritidis 0.20 143 107 S2 90371 Salmonella enterica subsp. enterica serovar Typhimurium 0.03 24 24 S3 1008297 Salmonella enterica subsp. enterica serovar Typhimurium str. 798 0.02 12 12 S3 1454647 Salmonella enterica subsp. enterica serovar Typhimurium str. USDA-ARS-USMARC-1810 0.07 53 0 S2 1242084 Salmonella enterica subsp. enterica serovar Krefeld 0.07 53 53 S3 1242106 Salmonella enterica subsp. enterica serovar Krefeld str. SA20030536 0.05 35 35 S2 115981 Salmonella enterica subsp. enterica serovar Montevideo 0.04 30 30 S2 90370 Salmonella enterica subsp. enterica serovar Typhi 0.02 16 16 S2 90105 Salmonella enterica subsp. enterica serovar Saintpaul 0.02 12 4 S2 108619 Salmonella enterica subsp. enterica serovar Newport 0.01 8 8 S3 858307 Salmonella enterica subsp. enterica serovar Newport str. CVM N1543 0.01 9 9 S2 29474 Salmonella enterica subsp. enterica serovar California 0.01 8 8 S2 98360 Salmonella enterica subsp. enterica serovar Dublin 0.01 7 7 S2 192955 Salmonella enterica subsp. enterica serovar Kentucky 0.01 6 6 S2 58712 Salmonella enterica subsp. enterica serovar Anatum 0.01 5 5 S2 440524 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- 0.00 2 2 S2 82689 Salmonella enterica subsp. enterica serovar Muenster 0.00 1 1 S2 595 Salmonella enterica subsp. enterica serovar Infantis 0.00 1 1 S2 286783 Salmonella enterica subsp. enterica serovar Indiana 0.00 1 1 S2 2564310 Salmonella enterica subsp. enterica serovar Carmel 0.20 140 0 S 54736 Salmonella bongori 0.20 140 140 S1 1299282 Salmonella bongori CFSAN000510 3.80 2717 0 G 547 Enterobacter 3.76 2689 1 G1 354276 Enterobacter cloacae complex 2.50 1784 1784 S 299767 Enterobacter ludwigii 0.89 639 634 S 158836 Enterobacter hormaechei 0.01 5 5 S1 1296536 Enterobacter hormaechei subsp. xiangfangensis 0.11 82 82 S 208224 Enterobacter kobei 0.11 80 10 S 550 Enterobacter cloacae 0.10 70 70 S1 336306 Enterobacter cloacae subsp. cloacae 0.10 68 68 S 61645 Enterobacter asburiae 0.05 35 35 S 1812935 Enterobacter roggenkampii 0.04 26 26 S 881260 Enterobacter bugandensis 0.00 2 0 G1 2608935 unclassified Enterobacter 0.00 2 2 S 2870346 Enterobacter sp. C2 1.90 1356 0 F1 2890311 Klebsiella/Raoultella group 1.87 1340 26 G 570 Klebsiella 1.46 1041 860 S 573 Klebsiella pneumoniae 0.13 91 90 S1 72407 Klebsiella pneumoniae subsp. pneumoniae 0.00 1 1 S2 1094170 Klebsiella pneumoniae subsp. pneumoniae KPNIH10 0.13 90 90 S1 1049565 Klebsiella pneumoniae KCTC 2242 0.19 135 15 S 1463165 Klebsiella quasipneumoniae 0.17 120 120 S1 1667327 Klebsiella quasipneumoniae subsp. quasipneumoniae 0.06 42 18 S 244366 Klebsiella variicola 0.03 24 24 S1 640131 Klebsiella variicola At-22 0.05 34 34 S 1134687 Klebsiella michiganensis 0.03 24 24 S 548 Klebsiella aerogenes 0.03 20 0 G1 2608929 unclassified Klebsiella 0.02 11 11 S 2851540 Klebsiella sp. PL-2018 0.01 9 9 S 2829835 Klebsiella sp. P1954 0.02 11 11 S 2153354 Klebsiella huaxiensis 0.01 6 6 S 1259973 Klebsiella electrica 0.00 1 1 S 571 Klebsiella oxytoca 0.02 16 0 G 160674 Raoultella 0.02 14 14 S 54291 Raoultella ornithinolytica 0.00 2 2 S 575 Raoultella planticola 0.48 344 0 G 620 Shigella 0.44 315 314 S 623 Shigella flexneri 0.00 1 1 S1 424717 Shigella flexneri 3a 0.04 29 29 S 621 Shigella boydii 0.43 308 1 G 544 Citrobacter 0.35 250 0 G1 1344959 Citrobacter freundii complex 0.16 117 117 S 1639133 Citrobacter portucalensis 0.11 76 76 S 67828 Citrobacter gillenii 0.04 31 31 S 546 Citrobacter freundii 0.03 23 0 G2 2816438 unclassified Citrobacter freundii complex 0.03 22 22 S 1686385 Citrobacter sp. BIDMC108 0.00 1 1 S 2077149 Citrobacter freundii complex sp. CFNIH9 0.00 3 3 S 67827 Citrobacter werkmanii 0.05 38 38 S 2971264 Citrobacter enshiensis 0.03 19 0 S 35703 Citrobacter amalonaticus 0.03 19 19 S1 1261127 Citrobacter amalonaticus Y19 0.30 215 22 F1 36866 unclassified Enterobacteriaceae 0.14 100 100 S 2675793 Enterobacteriaceae endosymbiont of Plateumaris braccata 0.12 84 84 S 2675787 Enterobacteriaceae endosymbiont of Donacia tomentosa 0.01 6 6 S 2675780 Enterobacteriaceae endosymbiont of Donacia piscatrix 0.00 2 2 S 2675797 Enterobacteriaceae endosymbiont of Plateumaris sericea 0.00 1 1 S 2675786 Enterobacteriaceae endosymbiont of Donacia thalassina 0.29 209 0 F1 191675 Enterobacteriaceae incertae sedis 0.29 209 1 F2 84563 ant, tsetse, mealybug, aphid, etc. endosymbionts 0.24 168 0 F3 84564 ant endosymbionts 0.13 93 0 G 1699619 Candidatus Westeberhardia 0.13 93 93 S 1594731 Candidatus Westeberhardia cardiocondylae 0.10 75 1 G 203804 Candidatus Blochmanniella 0.09 67 19 G1 711328 unclassified Candidatus Blochmanniella 0.07 47 47 S 1505596 Blochmannia endosymbiont of Polyrhachis (Hedomyrma) turneri 0.00 1 1 S 2681987 Blochmannia endosymbiont of Colobopsis nipponica 0.01 5 5 S 251538 Candidatus Blochmannia ocreatus 0.00 2 0 S 251535 Candidatus Blochmanniella vafra 0.00 2 2 S1 859654 Candidatus Blochmanniella vafra str. BVAF 0.03 22 0 F3 146507 aphid secondary symbionts 0.02 12 12 S 1199245 secondary endosymbiont of Ctenarytaina eucalypti 0.01 4 4 G 568987 Candidatus Hamiltonella 0.01 4 0 G 568988 Candidatus Regiella 0.01 4 0 G1 3077955 unclassified Candidatus Regiella 0.01 4 4 S 3077956 Candidatus Regiella endosymbiont of Tuberolachnus salignus 0.00 2 2 S 134287 secondary endosymbiont of Heteropsylla cubana 0.01 10 0 G 1302410 Candidatus Annandia 0.01 10 10 S 1302411 Candidatus Annandia adelgestsuga 0.00 3 0 G 1906660 Candidatus Mikella 0.00 3 3 S 1778264 Candidatus Mikella endobia 0.00 2 0 G 1906657 Candidatus Doolittlea 0.00 2 2 S 1778262 Candidatus Doolittlea endobia 0.00 1 0 F3 199891 mealybug secondary endosymbionts 0.00 1 1 S 1835721 secondary endosymbiont of Trabutina mannipara 0.00 1 0 G 472825 Candidatus Purcelliella 0.00 1 1 S 472834 Candidatus Purcelliella pentastirinorum 0.00 1 0 G 1906659 Candidatus Hoaglandella 0.00 1 1 S 1778263 Candidatus Hoaglandella endobia 0.28 197 0 G 2815296 Jejubacter 0.28 197 197 S 2579935 Jejubacter calystegiae 0.26 186 0 G 1330547 Kosakonia 0.25 181 181 S 208223 Kosakonia cowanii 0.01 5 5 S 283686 Kosakonia radicincitans 0.12 86 0 G 409304 Candidatus Ishikawella 0.12 86 0 S 168169 Candidatus Ishikawella capsulata 0.12 86 86 S1 476281 Candidatus Ishikawaella capsulata Mpkobe 0.06 44 0 G 1048757 Candidatus Moranella 0.06 44 44 S 1048758 Candidatus Moranella endobia 0.05 38 0 G 1330545 Lelliottia 0.05 38 38 S 61646 Lelliottia amnigena 0.05 33 0 G 1177214 Candidatus Profftia 0.04 32 0 G1 2735709 unclassified Candidatus Profftia 0.04 32 32 S 2864218 Candidatus Profftia sp. (ex Adelges kitamiensis) 0.00 1 1 S 1987921 Candidatus Profftia lariciata 0.03 22 0 G 2303321 Superficieibacter 0.03 22 0 G1 2645744 unclassified Superficieibacter 0.03 22 22 S 3031919 Superficieibacter sp. HKU1 0.01 8 0 G 2726810 Scandinavium 0.01 8 8 S 1851514 Scandinavium goeteborgense 0.01 5 0 G 1335483 Shimwellia 0.01 5 5 S 563 Shimwellia blattae 0.01 4 2 G 401618 Candidatus Riesia 0.00 2 2 S 401619 Candidatus Riesia pediculicola 0.00 3 3 G 158483 Cedecea 0.00 3 0 G 158851 Trabulsiella 0.00 3 3 S 379893 Trabulsiella odontotermitis 0.00 1 0 G 1081630 Candidatus Schneideria 0.00 1 1 S 1081631 Candidatus Schneideria nysicola 0.00 1 0 G 1649295 Franconibacter 0.00 1 1 S 2047724 Franconibacter daqui 0.00 1 1 G 413496 Cronobacter 1.74 1243 0 F 2812006 Bruguierivoracaceae 1.74 1243 0 G 84565 Sodalis 1.40 1002 1002 S 2697027 Sodalis ligni 0.31 219 0 S 1486991 Candidatus Sodalis pierantonius 0.31 219 219 S1 2342 Candidatus Sodalis pierantonius str. SOPE 0.02 16 0 G1 2636512 unclassified Sodalis 0.02 16 16 S 1929246 Sodalis endosymbiont of Henestaris halophilus 0.01 6 6 S 1239307 Sodalis praecaptivus 0.90 646 2 F 1903411 Yersiniaceae 0.59 420 0 G 613 Serratia 0.39 277 276 S 138074 Serratia symbiotica 0.00 1 1 S1 3066236 Serratia symbiotica (Periphyllus acericola) 0.10 69 69 S 614 Serratia liquefaciens 0.05 39 39 S 61652 Serratia rubidaea 0.03 21 0 S 82996 Serratia plymuthica 0.03 21 21 S1 1006598 Serratia plymuthica RVH1 0.02 14 0 G1 2647522 unclassified Serratia (in: enterobacteria) 0.02 14 14 S 2785630 Serratia sp. CMO1 0.27 196 0 G 629 Yersinia 0.23 165 0 G1 1649845 Yersinia pseudotuberculosis complex 0.23 165 6 S 632 Yersinia pestis 0.17 124 124 S1 748678 Yersinia pestis str. Pestoides B 0.03 20 20 S1 360102 Yersinia pestis Antiqua 0.01 9 9 S1 649716 Yersinia pestis Pestoides G 0.01 6 6 S1 1345701 Yersinia pestis 790 0.04 31 31 S 935293 Yersinia entomophaga 0.04 28 28 G 1927833 Candidatus Fukatsuia 0.50 358 16 F 1903414 Morganellaceae 0.15 109 0 G 581 Morganella 0.15 109 104 S 582 Morganella morganii 0.01 5 5 S1 180434 Morganella morganii subsp. morganii 0.12 89 13 G 637 Arsenophonus 0.05 37 0 G1 2627083 unclassified Arsenophonus 0.03 24 24 S 3041619 Arsenophonus sp. aPb 0.02 11 11 S 3066235 Arsenophonus endosymbiont of Crataerina pallida 0.00 1 1 S 634121 Arsenophonus symbiont of Ornithomya chloropus 0.00 1 1 S 1231049 Arsenophonus endosymbiont of Aphis craccivora 0.05 35 35 S 638 Arsenophonus nasoniae 0.01 4 4 S 634113 Candidatus Arsenophonus lipoptenae 0.10 75 1 G 583 Proteus 0.10 72 72 S 584 Proteus mirabilis 0.00 1 1 S 585 Proteus vulgaris 0.00 1 0 S 1574161 Proteus terrae 0.00 1 1 S1 626774 Proteus terrae subsp. cibarius 0.05 35 0 G 626 Xenorhabdus 0.04 26 0 S 40577 Xenorhabdus poinarii 0.04 26 26 S1 1354304 Xenorhabdus poinarii G6 0.01 4 4 S 290110 Xenorhabdus budapestensis 0.01 4 4 S 351671 Xenorhabdus doucetiae 0.00 1 0 S 40576 Xenorhabdus bovienii 0.00 1 1 S1 406818 Xenorhabdus bovienii SS-2004 0.03 22 22 G 29487 Photorhabdus 0.02 12 0 G 586 Providencia 0.01 9 9 S 1715285 Candidatus Providencia siddallii 0.00 2 0 S 516075 Providencia sneebia 0.00 2 2 S1 1141660 Providencia sneebia DSM 19967 0.00 1 0 G1 2633465 unclassified Providencia 0.00 1 1 S 2939731 Providencia sp. PROV188 0.30 212 0 F 1903410 Pectobacteriaceae 0.18 128 31 G 204037 Dickeya 0.10 71 71 S 1089444 Dickeya solani 0.03 20 20 S 1778540 Dickeya fangzhongdai 0.01 6 0 S 204038 Dickeya dadantii 0.01 6 6 S1 1224149 Dickeya dadantii NCPPB 3537 0.11 82 0 G 122277 Pectobacterium 0.09 65 50 S 1905730 Pectobacterium parmentieri 0.02 15 15 S1 561231 Pectobacterium parmentieri WPP163 0.01 6 6 S 2485124 Pectobacterium polonicum 0.01 5 5 S 2488639 Pectobacterium versatile 0.01 4 0 G1 2627739 unclassified Pectobacterium 0.01 4 4 S 2738983 Pectobacterium sp. PL64 0.00 2 2 S 180957 Pectobacterium brasiliense 0.00 2 0 G 71655 Brenneria 0.00 2 2 S 55213 Brenneria rubrifaciens 0.20 140 7 F 1903409 Erwiniaceae 0.08 59 0 G 551 Erwinia 0.06 45 0 G1 2622719 unclassified Erwinia 0.06 45 45 S 215689 Erwinia sp. Ejp617 0.02 12 12 S 1922217 Candidatus Erwinia haradaeae 0.00 1 1 S 65700 Erwinia tracheiphila 0.00 1 1 S 2681984 Erwinia sorbitola 0.05 37 0 G 32199 Buchnera 0.05 37 26 S 9 Buchnera aphidicola 0.01 6 6 S1 2315800 Buchnera aphidicola (Stegophylla sp.) 0.00 2 2 S1 2027478 Buchnera aphidicola (Periphyllus acericola) 0.00 2 2 S1 1241860 Buchnera aphidicola (Hyperomyzus lactucae) 0.00 1 1 S1 1965431 Buchnera aphidicola (Ceratoglyphina bambusae) 0.05 33 0 G 53335 Pantoea 0.03 20 20 S 1235990 Candidatus Pantoea carbekii 0.02 12 12 S 59814 Pantoea dispersa 0.00 1 1 S 66269 Pantoea stewartii 0.00 2 0 G 2997349 Winslowiella 0.00 2 2 S 92490 Winslowiella toletana 0.00 1 0 G 2100764 Mixta 0.00 1 1 S 1615494 Mixta intestinalis 0.00 1 0 G 3026546 Duffyella 0.00 1 1 S 1619313 Duffyella gerundensis 0.08 60 0 F 1903412 Hafniaceae 0.08 60 52 G 635 Edwardsiella 0.01 6 6 S 636 Edwardsiella tarda 0.00 2 2 S 67780 Edwardsiella ictaluri 0.02 16 0 F 3120698 Gallaecimonadaceae 0.02 16 0 G 745410 Gallaecimonas 0.02 16 16 S 3029055 Gallaecimonas kandeliae 0.00 1 0 F 1903416 Budviciaceae 0.00 1 0 G 2172100 Limnobaculum 0.00 1 1 S 2498113 Limnobaculum zhutongyuii 2.26 1613 0 O 135625 Pasteurellales 2.26 1613 9 F 712 Pasteurellaceae 2.18 1555 0 G 713 Actinobacillus 2.11 1511 0 S 718 Actinobacillus equuli 2.11 1511 1511 S1 202948 Actinobacillus equuli subsp. haemolyticus 0.06 43 43 S 157339 Actinobacillus arthritidis 0.00 1 0 S 67854 Actinobacillus succinogenes 0.00 1 1 S1 339671 Actinobacillus succinogenes 130Z 0.03 18 0 G 724 Haemophilus 0.03 18 18 S 729 Haemophilus parainfluenzae 0.01 10 0 G 2899790 Mergibacter 0.01 10 10 S 221402 Mergibacter septicus 0.01 10 0 G 745 Pasteurella 0.01 10 10 S 747 Pasteurella multocida 0.01 4 0 G 75984 Mannheimia 0.00 3 3 S 85402 Mannheimia granulomatis 0.00 1 1 S 75985 Mannheimia haemolytica 0.01 4 0 G 155493 Gallibacterium 0.01 4 4 S 750 Gallibacterium anatis 0.00 3 0 G 214906 Histophilus 0.00 3 3 S 731 Histophilus somni 1.43 1019 0 O 135624 Aeromonadales 1.42 1018 97 F 84642 Aeromonadaceae 0.81 580 4 G 642 Aeromonas 0.58 413 413 S 654 Aeromonas veronii 0.11 79 79 S 652 Aeromonas schubertii 0.09 66 0 G1 257493 unclassified Aeromonas 0.09 63 63 S 2560029 Aeromonas sp. 2692-1 0.00 3 3 S 2920537 Aeromonas sp. 19NY04SH05-1 0.02 12 12 S 648 Aeromonas caviae 0.00 3 0 S 651 Aeromonas media 0.00 3 3 S1 1208104 Aeromonas media WS 0.00 2 2 S 644 Aeromonas hydrophila 0.00 1 1 S 645 Aeromonas salmonicida 0.44 313 0 G 225143 Oceanisphaera 0.44 313 313 S 1903694 Oceanisphaera avium 0.04 26 0 G 43947 Tolumonas 0.03 25 25 S 43948 Tolumonas auensis 0.00 1 0 G1 263764 environmental samples 0.00 1 1 S 263765 uncultured Tolumonas sp. 0.00 2 0 G 347533 Zobellella 0.00 2 2 S 347534 Zobellella denitrificans 0.00 1 0 F 83763 Succinivibrionaceae 0.00 1 0 G 83770 Succinivibrio 0.00 1 1 S 83771 Succinivibrio dextrinosolvens 1.38 983 0 O 135623 Vibrionales 1.38 983 65 F 641 Vibrionaceae 1.03 739 2 G 662 Vibrio 0.64 460 0 S 52443 Vibrio tapetis 0.64 460 460 S1 1671868 Vibrio tapetis subsp. tapetis 0.24 170 169 S 666 Vibrio cholerae 0.00 1 1 S1 1420885 Vibrio cholerae MS6 0.05 39 0 G1 2614977 unclassified Vibrio 0.04 31 31 S 2661921 Vibrio sp. THAF191c 0.01 5 5 S 2589990 Vibrio sp. Scap24 0.00 2 2 S 2661922 Vibrio sp. THAF191d 0.00 1 1 S 2819101 Vibrio sp. SCSIO 43136 0.03 22 0 G1 717610 Vibrio harveyi group 0.02 16 13 S 670 Vibrio parahaemolyticus 0.00 3 3 S1 745023 Vibrio parahaemolyticus 10329 0.00 3 3 S 669 Vibrio harveyi 0.00 2 2 S 663 Vibrio alginolyticus 0.00 1 0 G2 2315253 Vibrio diabolicus subgroup 0.00 1 1 S 50719 Vibrio diabolicus 0.03 22 22 S 2572923 Vibrio taketomensis 0.01 7 0 G1 87806 environmental samples 0.01 7 7 S 114054 uncultured Vibrio sp. 0.01 6 0 S 672 Vibrio vulnificus 0.01 6 6 S1 914127 Vibrio vulnificus MO6-24/O 0.01 5 5 S 104609 Vibrio penaeicida 0.00 2 2 S 29495 Vibrio navarrensis 0.00 1 0 G1 1891919 Vibrio oreintalis group 0.00 1 1 S 29498 Vibrio tubiashii 0.00 1 0 S 55601 Vibrio anguillarum 0.00 1 1 S1 42323 Vibrio anguillarum serovar O1 0.00 1 1 S 2662262 Vibrio algicola 0.00 1 1 S 674 Vibrio mimicus 0.24 169 0 G 657 Photobacterium 0.17 119 28 S 553611 Photobacterium leiognathi 0.13 91 91 S1 48408 Photobacterium leiognathi subsp. mandapamensis 0.07 50 1 S 38293 Photobacterium damselae 0.07 47 47 S1 38294 Photobacterium damselae subsp. piscicida 0.00 2 2 S1 85581 Photobacterium damselae subsp. damselae 0.01 7 0 G 511678 Aliivibrio 0.01 7 0 S 40269 Aliivibrio salmonicida 0.01 7 7 S1 316275 Aliivibrio salmonicida LFI1238 0.00 2 0 G 2042066 Paraphotobacterium 0.00 2 2 S 1755811 Paraphotobacterium marinum 0.00 1 0 G 188143 Enterovibrio 0.00 1 1 S 1927128 Candidatus Enterovibrio luxaltus 1.01 720 0 O 2887326 Moraxellales 1.01 720 18 F 468 Moraxellaceae 0.86 615 15 G 469 Acinetobacter 0.80 574 1 G1 909768 Acinetobacter calcoaceticus/baumannii complex 0.57 410 410 S 470 Acinetobacter baumannii 0.23 161 159 S 48296 Acinetobacter pittii 0.00 2 2 S1 871585 Acinetobacter pittii PHEA-2 0.00 2 2 S 106654 Acinetobacter nosocomialis 0.02 11 11 S 202956 Acinetobacter towneri 0.01 7 7 G1 196816 unclassified Acinetobacter 0.01 6 6 S 40214 Acinetobacter johnsonii 0.00 2 2 S 108981 Acinetobacter schindleri 0.09 61 1 G 475 Moraxella 0.08 56 56 S 2904120 Moraxella nasibovis 0.00 3 3 S 90241 Moraxella lincolnii 0.00 1 1 S 480 Moraxella catarrhalis 0.03 25 15 G 497 Psychrobacter 0.01 8 7 G1 196806 unclassified Psychrobacter 0.00 1 1 S 3064892 Psychrobacter sp. van23A 0.00 2 2 S 256326 Psychrobacter arenosus 0.00 1 0 G 2824158 Aquirhabdus 0.00 1 1 S 2283318 Aquirhabdus parva 0.51 368 1 C1 118884 Gammaproteobacteria incertae sedis 0.50 360 0 G 1076625 Candidatus Steffania 0.50 360 360 S 1076626 Candidatus Steffania adelgidicola 0.01 6 0 G 198346 Candidatus Palibaumannia 0.01 6 6 S 186490 Candidatus Palibaumannia cicadellinicola 0.00 1 0 C2 32036 sulfur-oxidizing symbionts 0.00 1 0 G 2686004 Candidatus Vondammii 0.00 1 0 G1 2687300 unclassified Candidatus Vondammii 0.00 1 1 S 2687299 Candidatus Vondammii sp. HM_W22 0.49 348 5 O 135622 Alteromonadales 0.23 162 0 F 72275 Alteromonadaceae 0.23 162 0 F1 2903219 Alteromonas/Salinimonas group 0.23 162 0 G 226 Alteromonas 0.22 159 0 G1 2614992 unclassified Alteromonas 0.22 159 159 S 2267264 Alteromonas sp. RKMC-009 0.00 3 3 S 589873 Alteromonas australica 0.21 150 3 F 267890 Shewanellaceae 0.20 146 41 G 22 Shewanella 0.06 44 44 S 62322 Shewanella baltica 0.04 27 27 S 712036 Shewanella dokdonensis 0.03 25 25 S 2018305 Shewanella bicestrii 0.01 6 6 G1 196818 unclassified Shewanella 0.00 3 3 S 2520507 Shewanella maritima 0.00 1 0 G 2547964 Parashewanella 0.00 1 1 S 2547970 Parashewanella tropica 0.04 26 0 F 267888 Pseudoalteromonadaceae 0.03 23 0 G 53246 Pseudoalteromonas 0.03 23 0 G1 194690 unclassified Pseudoalteromonas 0.03 22 22 S 2785910 Pseudoalteromonas sp. A41-2 0.00 1 1 S 649161 Pseudoalteromonas sp. 3J6 0.00 3 0 G 2834759 Flocculibacter 0.00 3 3 S 2744479 Flocculibacter collagenilyticus 0.01 4 0 F 267891 Moritellaceae 0.01 4 0 G 58050 Moritella 0.01 4 0 S 90736 Moritella marina 0.01 4 4 S1 1202962 Moritella marina ATCC 15381 0.00 1 0 F 267892 Ferrimonadaceae 0.00 1 0 G 44011 Ferrimonas 0.00 1 1 S 2724191 Ferrimonas lipolytica 0.46 332 1 O 72274 Pseudomonadales 0.45 319 4 F 135621 Pseudomonadaceae 0.43 309 48 G 286 Pseudomonas 0.13 94 0 G1 136845 Pseudomonas putida group 0.13 94 94 S 303 Pseudomonas putida 0.09 67 0 G1 196821 unclassified Pseudomonas 0.09 62 62 S 2025658 Pseudomonas sp. NS1(2017) 0.00 2 2 S 2954086 Pseudomonas sp. FP2196 0.00 1 1 S 1173283 Pseudomonas sp. R3-18-08 0.00 1 1 S 2954080 Pseudomonas sp. FP1762 0.00 1 1 S 2762896 Pseudomonas sp. MPDS 0.09 65 0 G1 136841 Pseudomonas aeruginosa group 0.09 65 65 S 287 Pseudomonas aeruginosa 0.02 15 0 G1 136843 Pseudomonas fluorescens group 0.01 10 1 S 47883 Pseudomonas synxantha 0.01 9 9 S1 96901 Pseudomonas synxantha BG33R 0.01 5 5 S 47878 Pseudomonas azotoformans 0.02 14 14 S 1302376 Candidatus Pseudomonas adelgestsugas 0.00 3 3 S 1198456 Pseudomonas guguanensis 0.00 1 1 S 2894079 Pseudomonas oryziphila 0.00 1 1 S 437900 Pseudomonas marincola 0.00 1 1 S 321846 Pseudomonas simiae 0.01 5 0 G 2901164 Stutzerimonas 0.01 5 0 G1 136846 Stutzerimonas stutzeri group 0.01 5 0 G2 578833 Stutzerimonas stutzeri subgroup 0.01 5 5 S 316 Stutzerimonas stutzeri 0.00 1 0 F1 351 Azotobacter group 0.00 1 1 G 352 Azotobacter 0.02 12 0 F 2887365 Marinobacteraceae 0.02 12 12 G 2742 Marinobacter 0.26 185 3 O 135619 Oceanospirillales 0.20 144 0 F 135620 Oceanospirillaceae 0.10 73 0 G 459520 Neptuniibacter 0.10 73 73 S 651666 Neptuniibacter halophilus 0.08 56 1 G 28253 Marinomonas 0.08 54 54 S 2773454 Marinomonas algicola 0.00 1 1 S 119864 Marinomonas mediterranea 0.02 12 12 G 515417 Amphritea 0.00 2 0 G 75687 Neptunomonas 0.00 2 0 S 417574 Neptunomonas japonica 0.00 2 2 S1 1441457 Neptunomonas japonica JAMM 1380 0.00 1 0 G 267849 Nitrincola 0.00 1 1 S 2614693 Nitrincola iocasae 0.03 18 2 F 28256 Halomonadaceae 0.02 11 11 G 404432 Salinicola 0.00 3 0 F1 114403 Zymobacter group 0.00 3 0 G 235572 Candidatus Portiera 0.00 3 3 S 91844 Candidatus Portiera aleyrodidarum 0.00 1 0 G 2745 Halomonas 0.00 1 1 G1 2609666 unclassified Halomonas 0.00 1 0 G 204286 Cobetia 0.00 1 0 G1 2609414 unclassified Cobetia 0.00 1 1 S 2686360 Cobetia sp. L2A1 0.02 16 0 F 2823145 Pleioneaceae 0.02 16 0 G 1502941 Pleionea 0.02 16 16 S 3070815 Pleionea litopenaei 0.00 2 0 F 224379 Hahellaceae 0.00 2 1 G 158481 Hahella 0.00 1 0 S 158327 Hahella chejuensis 0.00 1 1 S1 349521 Hahella chejuensis KCTC 2396 0.00 1 0 F 255527 Saccharospirillaceae 0.00 1 0 G 1445504 Gynuella 0.00 1 0 S 1445505 Gynuella sunshinyii 0.00 1 1 S1 1445510 Gynuella sunshinyii YC6258 0.00 1 0 F 449732 Litorivicinaceae 0.00 1 0 G 418700 Litorivicinus 0.00 1 1 S 418701 Litorivicinus lipolyticus 0.21 151 1 O 135613 Chromatiales 0.20 141 1 F 1046 Chromatiaceae 0.09 67 1 G 85072 Allochromatium 0.09 66 66 S 553982 Allochromatium tepidum 0.06 44 0 G 156885 Thioflavicoccus 0.06 44 0 S 80679 Thioflavicoccus mobilis 0.06 44 44 S1 765912 Thioflavicoccus mobilis 8321 0.02 15 14 G 61593 Thiorhodovibrio 0.00 1 1 S 77007 Thiorhodovibrio winogradskyi 0.01 9 9 G 1056 Thiocapsa 0.00 2 0 G 67575 Rheinheimera 0.00 2 0 G1 115860 unclassified Rheinheimera 0.00 2 2 S 1763998 Rheinheimera sp. F8 0.00 2 0 G 2828366 Caldichromatium 0.00 2 2 S 2699430 Caldichromatium japonicum 0.00 1 1 G 1227 Nitrosococcus 0.01 8 0 F 72276 Ectothiorhodospiraceae 0.01 4 0 G 133193 Alkalilimnicola 0.01 4 0 S 351052 Alkalilimnicola ehrlichii 0.01 4 4 S1 187272 Alkalilimnicola ehrlichii MLHE-1 0.01 4 1 G 1335745 Spiribacter 0.00 2 2 S 2182432 Spiribacter halobius 0.00 1 0 G1 2629425 unclassified Spiribacter 0.00 1 1 S 2666185 Spiribacter sp. 2438 0.00 1 0 F 3067276 Sedimenticolaceae 0.00 1 0 G 393764 Candidatus Endoriftia 0.00 1 1 S 393765 Candidatus Endoriftia persephone 0.12 84 0 O 118969 Legionellales 0.09 66 1 F 444 Legionellaceae 0.09 65 22 G 445 Legionella 0.05 35 0 S 446 Legionella pneumophila 0.05 35 35 S1 91891 Legionella pneumophila subsp. pneumophila 0.00 2 2 S 2708020 Legionella antarctica 0.00 2 2 S 1867846 Legionella clemsonensis 0.00 1 1 S 450 Legionella longbeachae 0.00 1 1 S 1071983 Legionella cardiaca 0.00 1 1 S 96232 Legionella lytica 0.00 1 0 S 29423 Legionella oakridgensis 0.00 1 1 S1 1268635 Legionella oakridgensis ATCC 33761 = DSM 21215 0.03 18 11 F 118968 Coxiellaceae 0.01 6 0 G 254245 Aquicella 0.01 6 6 S 254247 Aquicella siphonis 0.00 1 0 G 59195 Rickettsiella 0.00 1 1 G1 2637345 unclassified Rickettsiella 0.11 80 1 O 135614 Lysobacterales 0.10 73 0 F 32033 Lysobacteraceae 0.08 57 0 G 338 Xanthomonas 0.08 57 57 S 29447 Xanthomonas albilineans 0.01 6 0 G 141948 Thermomonas 0.01 6 6 S 1463158 Thermomonas carbonis 0.00 3 2 G 68 Lysobacter 0.00 1 1 S 84531 Lysobacter antibioticus 0.00 3 0 G 83614 Luteimonas 0.00 3 0 G1 2629088 unclassified Luteimonas 0.00 3 3 S 1896164 Luteimonas sp. JM171 0.00 3 2 G 83618 Pseudoxanthomonas 0.00 1 0 G1 2645906 unclassified Pseudoxanthomonas 0.00 1 1 S 2969308 Pseudoxanthomonas sp. JBR18 0.00 1 0 G 2709666 Pseudolysobacter 0.00 1 1 S 2511995 Pseudolysobacter antarcticus 0.01 6 4 F 1775411 Rhodanobacteraceae 0.00 1 1 G 231454 Dyella 0.00 1 1 G 242605 Luteibacter 0.05 33 1 O 72273 Thiotrichales 0.03 25 16 F 135616 Piscirickettsiaceae 0.01 5 0 G 2781121 Thiosulfatimonas 0.01 5 5 S 2675054 Thiosulfatimonas sediminis 0.00 2 0 G 933 Thiomicrospira 0.00 2 0 G1 2643099 unclassified Thiomicrospira 0.00 2 2 S 3035472 Thiomicrospira sp. R3 0.00 2 1 G 2039723 Thiomicrorhabdus 0.00 1 0 G1 2636650 unclassified Thiomicrorhabdus 0.00 1 1 S 2039724 Thiomicrorhabdus sp. 0.01 7 0 F 135617 Thiotrichaceae 0.01 7 1 G 1030 Thiothrix 0.01 6 6 S 525917 Thiothrix lacustris 0.04 30 0 O 1706369 Cellvibrionales 0.01 9 0 F 1706373 Microbulbiferaceae 0.01 9 0 G 48073 Microbulbifer 0.01 9 9 S 86173 Microbulbifer elongatus 0.01 8 0 F 1706375 Spongiibacteraceae 0.01 8 0 G 1084558 Oceanicoccus 0.01 8 8 S 716816 Oceanicoccus sagamiensis 0.01 7 0 F 1706371 Cellvibrionaceae 0.01 7 0 G 10 Cellvibrio 0.01 7 3 G1 2624793 unclassified Cellvibrio 0.01 4 4 S 1987723 Cellvibrio sp. PSBB006 0.01 6 6 F 1706372 Halieaceae 0.03 25 0 O 3084968 Thiohalomonadales 0.03 25 0 F 3084969 Thiohalomonadaceae 0.03 25 0 G 2034504 Sulfurivermis 0.03 25 25 S 1972068 Sulfurivermis fontis 0.02 12 0 O 135615 Cardiobacteriales 0.01 10 1 F 868 Cardiobacteriaceae 0.01 5 0 G 869 Dichelobacter 0.01 5 5 S 870 Dichelobacter nodosus 0.01 4 0 G 2717 Cardiobacterium 0.01 4 0 G1 2648856 unclassified Cardiobacterium 0.01 4 4 S 2866573 Cardiobacterium sp. Marseille-Q4385 0.00 2 0 F 3018589 Ignatzschineriaceae 0.00 1 1 G 112008 Ignatzschineria 0.00 1 0 G 582472 Wohlfahrtiimonas 0.00 1 1 S 400946 Wohlfahrtiimonas chitiniclastica 0.01 8 0 O 135618 Methylococcales 0.01 8 1 F 403 Methylococcaceae 0.01 4 0 G 3135206 Candidatus Methylocalor 0.01 4 4 S 3108543 Candidatus Methylocalor cossyra 0.00 2 0 G 73778 Methylocaldum 0.00 2 2 S 1432792 Methylocaldum marinum 0.00 1 0 G 429 Methylobacter 0.00 1 0 G1 2635283 unclassified Methylobacter 0.00 1 1 S 2839024 Methylobacter sp. S3L5C 0.00 3 0 O 1240482 Orbales 0.00 3 0 F 1240483 Orbaceae 0.00 3 0 G 2894762 Zophobihabitans 0.00 3 3 S 1635327 Zophobihabitans entericus 0.00 1 0 O 2887327 Kangiellales 0.00 1 0 F 1920240 Kangiellaceae 0.00 1 0 G 261963 Kangiella 0.00 1 1 S 1144748 Kangiella sediminilitoris 1.31 939 45 C 28211 Alphaproteobacteria 0.96 684 31 O 356 Hyphomicrobiales 0.37 261 0 F 118882 Brucellaceae 0.36 260 242 F1 2826938 Brucella/Ochrobactrum group 0.03 18 8 G 234 Brucella 0.01 6 6 S 94625 Brucella intermedia 0.00 3 0 S 235 Brucella abortus 0.00 3 0 S1 1567505 Brucella abortus bv. 9 0.00 3 3 S2 520455 Brucella abortus bv. 9 str. C68 0.00 1 1 S 29461 Brucella suis 0.00 1 1 G 354349 Pseudochrobactrum 0.24 173 25 F 119045 Methylobacteriaceae 0.19 138 85 G 407 Methylobacterium 0.03 24 24 S 410 Methylobacterium organophilum 0.03 22 0 S 31998 Methylobacterium radiotolerans 0.03 22 22 S1 426355 Methylobacterium radiotolerans JCM 2831 0.01 6 1 G1 2615210 unclassified Methylobacterium 0.00 3 3 S 426117 Methylobacterium sp. 4-46 0.00 2 2 S 2984843 Methylobacterium sp. FF17 0.00 1 1 S 2051553 Methylobacterium currus 0.01 10 10 G 186650 Microvirga 0.14 97 16 F 82115 Rhizobiaceae 0.09 61 25 F1 227290 Rhizobium/Agrobacterium group 0.03 20 8 G 379 Rhizobium 0.01 9 0 S 56730 Rhizobium gallicum 0.01 9 0 S1 142627 Rhizobium gallicum bv. gallicum 0.01 9 9 S2 1041138 Rhizobium gallicum bv. gallicum R602sp 0.00 3 0 G1 2613769 unclassified Rhizobium 0.00 2 2 S 3019602 Rhizobium sp. 32-5/1 0.00 1 1 S 2926709 Rhizobium sp. CC-CFT758 0.02 15 0 G 1525371 Neorhizobium 0.02 15 0 G1 2629175 unclassified Neorhizobium 0.02 15 15 S 2978974 Neorhizobium sp. CSC1952 0.00 1 0 G 357 Agrobacterium 0.00 1 0 G1 1183400 Agrobacterium tumefaciens complex 0.00 1 1 S 358 Agrobacterium tumefaciens 0.02 17 0 F1 227292 Sinorhizobium/Ensifer group 0.02 17 1 G 28105 Sinorhizobium 0.02 15 1 S 382 Sinorhizobium meliloti 0.02 14 14 S1 1041157 Sinorhizobium meliloti WSM1022 0.00 1 1 S 110322 Sinorhizobium terangae 0.00 3 1 G 34019 Liberibacter 0.00 1 0 S 309868 Candidatus Liberibacter americanus 0.00 1 1 S1 1261131 Candidatus Liberibacter americanus str. Sao Paulo 0.00 1 0 S 556287 Candidatus Liberibacter solanacearum 0.00 1 1 S1 658172 Candidatus Liberibacter solanacearum CLso-ZC1 0.08 55 2 F 2813035 Parvibaculaceae 0.07 53 0 G 256616 Parvibaculum 0.07 53 0 S 256618 Parvibaculum lavamentivorans 0.07 53 53 S1 402881 Parvibaculum lavamentivorans DS-1 0.03 18 0 F 69277 Phyllobacteriaceae 0.02 12 0 G 68287 Mesorhizobium 0.02 12 12 S 2725666 Mesorhizobium terrae 0.01 4 0 G 2911176 Aquibium 0.01 4 4 S 1670800 Aquibium oceanicum 0.00 2 2 G 245876 Nitratireductor 0.02 13 1 F 45401 Hyphomicrobiaceae 0.01 10 2 G 81 Hyphomicrobium 0.01 8 0 G1 2619925 unclassified Hyphomicrobium 0.01 8 8 S 2682968 Hyphomicrobium sp. ghe19 0.00 2 0 G 1484898 Methyloceanibacter 0.00 2 0 G1 2617503 unclassified Methyloceanibacter 0.00 2 2 S 2170729 Methyloceanibacter sp. wino2 0.01 10 0 F 2831106 Devosiaceae 0.01 7 0 G 3064792 Mariluticola 0.01 7 7 S 2909283 Mariluticola halotolerans 0.00 3 3 G 46913 Devosia 0.01 9 0 F 335928 Xanthobacteraceae 0.01 8 7 G 556257 Pseudolabrys 0.00 1 1 S 331696 Pseudolabrys taiwanensis 0.00 1 0 G 279 Xanthobacter 0.00 1 1 S 2528964 Xanthobacter dioxanivorans 0.01 7 0 F 772 Bartonellaceae 0.01 7 0 G 773 Bartonella 0.01 5 0 G1 2645622 unclassified Bartonella 0.01 5 5 S 3057550 Bartonella sp. TP 0.00 2 2 S 803 Bartonella quintana 0.00 3 1 F 41294 Nitrobacteraceae 0.00 1 0 G 1073 Rhodopseudomonas 0.00 1 0 G1 2638247 unclassified Rhodopseudomonas 0.00 1 1 S 2991972 Rhodopseudomonas sp. P2A-2r 0.00 1 1 G 1395974 Tardiphaga 0.00 3 0 F 2821832 Stappiaceae 0.00 3 0 G 150830 Roseibium 0.00 3 0 G1 1936170 environmental samples 0.00 3 3 S 1936171 uncultured Roseibium sp. 0.00 1 0 F 255475 Aurantimonadaceae 0.00 1 0 G 1775688 Jiella 0.00 1 1 S 2986949 Jiella pelagia 0.00 1 0 F 2036754 Chelatococcaceae 0.00 1 1 G 28209 Chelatococcus 0.00 1 0 F 2843308 Pleomorphomonadaceae 0.00 1 0 G 261933 Pleomorphomonas 0.00 1 0 G1 442120 environmental samples 0.00 1 1 S 442121 uncultured Pleomorphomonas sp. 0.00 1 0 F 2831090 Blastochloridaceae 0.00 1 1 G 59282 Blastochloris 0.10 75 1 O 204457 Sphingomonadales 0.08 56 2 F 41297 Sphingomonadaceae 0.06 41 38 G 13687 Sphingomonas 0.00 1 1 S 1813879 Sphingomonas panacisoli 0.00 1 1 S 13689 Sphingomonas paucimobilis 0.00 1 1 S 1541170 Sphingomonas morindae 0.02 12 3 G 165696 Novosphingobium 0.01 6 6 S 13688 Novosphingobium capsulatum 0.00 2 2 S 2728851 Novosphingobium olei 0.00 1 0 G1 2644732 unclassified Novosphingobium 0.00 1 1 S 3079861 Novosphingobium sp. ZN18A2 0.00 1 0 G 1234545 Parasphingopyxis 0.00 1 0 G1 2621071 unclassified Parasphingopyxis 0.00 1 1 S 2724527 Parasphingopyxis sp. CP4 0.02 17 1 F 335929 Erythrobacteraceae 0.02 13 13 G 2800681 Aurantiacibacter 0.00 2 0 G 2676755 Croceibacterium 0.00 2 0 G1 2676756 unclassified Croceibacterium 0.00 2 2 S 3121290 Croceibacterium sp. TMG7-5b_MA50 0.00 1 0 G 2800680 Alteriqipengyuania 0.00 1 1 S 3053610 Alteriqipengyuania flavescens 0.00 1 0 F 2844881 Zymomonadaceae 0.00 1 0 G 541 Zymomonas 0.00 1 1 S 542 Zymomonas mobilis 0.07 51 0 O 204441 Rhodospirillales 0.05 39 0 F 2690195 Elioraeaceae 0.05 39 0 G 457933 Elioraea 0.05 39 39 S 2843330 Elioraea tepida 0.01 8 0 F 2844601 Stellaceae 0.01 8 0 G 93 Stella 0.01 8 8 S 94 Stella humosa 0.00 3 0 F 41295 Rhodospirillaceae 0.00 3 0 G 1263978 Candidatus Endolissoclinum 0.00 3 3 S 1263979 Candidatus Endolissoclinum faulkneri 0.00 1 1 F 433 Acetobacteraceae 0.04 27 0 O 204458 Caulobacterales 0.04 27 0 F 76892 Caulobacteraceae 0.02 17 16 G 41275 Brevundimonas 0.00 1 0 G1 2622653 unclassified Brevundimonas 0.00 1 1 S 2560058 Brevundimonas sp. Bb-A 0.01 9 0 G 20 Phenylobacterium 0.01 7 7 S 2201350 Phenylobacterium parvum 0.00 2 0 S 284016 Phenylobacterium zucineum 0.00 2 2 S1 450851 Phenylobacterium zucineum HLK1 0.00 1 0 G 75 Caulobacter 0.00 1 0 G1 2648921 unclassified Caulobacter 0.00 1 1 S 3016000 Caulobacter sp. NIBR1757 0.03 18 0 O 2800060 Hyphomonadales 0.03 18 0 F 69657 Hyphomonadaceae 0.03 18 18 G 85 Hyphomonas 0.03 18 0 O 2066490 Emcibacterales 0.03 18 0 F 2066491 Emcibacteraceae 0.03 18 0 G 2943291 Pseudemcibacter 0.03 18 18 S 2857064 Pseudemcibacter aquimaris 0.02 15 4 O 204455 Rhodobacterales 0.02 11 0 F 31989 Paracoccaceae 0.01 10 10 G 265 Paracoccus 0.00 1 0 G 34008 Rhodovulum 0.00 1 0 G1 2631432 unclassified Rhodovulum 0.00 1 1 S 1564506 Rhodovulum sp. P5 0.00 3 0 O 766 Rickettsiales 0.00 2 0 O1 1699067 unclassified Rickettsiales 0.00 2 2 S 2486578 Rickettsiales endosymbiont of Stachyamoeba lipophora 0.00 1 0 F 942 Anaplasmataceae 0.00 1 0 G 943 Ehrlichia 0.00 1 0 G1 106178 canis group 0.00 1 1 S 779 Ehrlichia ruminantium 0.00 3 0 O 1921002 Holosporales 0.00 2 0 F 44746 Holosporaceae 0.00 2 0 G 2654634 Candidatus Hydrogenosomobacter 0.00 2 2 S 2558174 Candidatus Hydrogenosomobacter endosymbioticus 0.00 1 0 F 1777752 Candidatus Paracaedibacteraceae 0.00 1 0 G 1521255 Candidatus Paracaedibacter 0.00 1 1 S 91604 Candidatus Paracaedibacter acanthamoebae 1.08 772 273 C 28216 Betaproteobacteria 0.58 415 15 O 80840 Burkholderiales 0.29 204 8 F 80864 Comamonadaceae 0.26 186 186 G 80865 Delftia 0.01 8 1 G 283 Comamonas 0.01 6 6 S 2743470 Comamonas antarctica 0.00 1 0 G1 2638500 unclassified Comamonas 0.00 1 1 S 2853257 Comamonas sp. Y33R10-2 0.00 1 1 G 34072 Variovorax 0.00 1 0 G 364316 Verminephrobacter 0.00 1 0 S 364317 Verminephrobacter eiseniae 0.00 1 1 S1 391735 Verminephrobacter eiseniae EF01-2 0.24 168 5 F 119060 Burkholderiaceae 0.08 59 2 G 48736 Ralstonia 0.08 57 0 G1 3116862 Ralstonia solanacearum species complex 0.08 57 57 S 305 Ralstonia solanacearum 0.07 47 6 G 32008 Burkholderia 0.03 23 0 G1 111527 pseudomallei group 0.02 13 1 S 57975 Burkholderia thailandensis 0.02 12 12 S1 1249664 Burkholderia thailandensis 34 0.01 10 10 S 28450 Burkholderia pseudomallei 0.02 14 0 G1 87882 Burkholderia cepacia complex 0.02 13 13 S 488447 Burkholderia contaminans 0.00 1 1 S 87883 Burkholderia multivorans 0.01 4 0 G1 2613784 unclassified Burkholderia 0.01 4 4 S 1494466 Burkholderia sp. FERM BP-3421 0.03 18 0 G 2038280 Robbsia 0.03 18 0 G1 2636574 unclassified Robbsia 0.03 18 18 S 3149231 Robbsia sp. KACC 23696 0.02 12 0 G 106589 Cupriavidus 0.02 12 12 S 164546 Cupriavidus taiwanensis 0.02 11 0 G 2018044 Candidatus Vallotia 0.02 11 11 S 1177213 Candidatus Vallotia tarda 0.01 5 0 G 1822464 Paraburkholderia 0.01 4 4 S 2571748 Paraburkholderia acidisoli 0.00 1 1 S 273251 Paraburkholderia sabiae 0.01 5 0 G 2571159 Mycetohabitans 0.01 5 5 S 417203 Mycetohabitans endofungorum 0.00 3 0 G 47670 Lautropia 0.00 3 3 S 47671 Lautropia mirabilis 0.00 1 0 G 44013 Polynucleobacter 0.00 1 1 S 576610 Polynucleobacter necessarius 0.00 1 1 G 93217 Pandoraea 0.00 1 1 G 1810868 Mycoavidus 0.02 16 5 F 75682 Oxalobacteraceae 0.01 4 1 G 963 Herbaspirillum 0.00 3 3 S 863372 Herbaspirillum huttiense 0.00 3 0 F1 2895353 Telluria group 0.00 3 0 G 149698 Massilia 0.00 1 1 S 457921 Massilia varians 0.00 1 1 S 945844 Massilia oculi 0.00 1 0 G1 2609279 unclassified Massilia 0.00 1 1 S 3126507 Massilia sp. W12 0.00 2 1 G 401469 Undibacterium 0.00 1 1 G1 2630295 unclassified Undibacterium 0.00 1 1 G 29580 Janthinobacterium 0.00 1 0 G 884214 Candidatus Zinderia 0.00 1 0 G1 3077950 unclassified Candidatus Zinderia 0.00 1 1 S 3077951 Candidatus Zinderia endosymbiont of Aphrophora alni 0.01 8 0 F 506 Alcaligenaceae 0.01 4 0 G 1472344 Basilea 0.01 4 0 S 1472345 Basilea psittacipulmonis 0.01 4 4 S1 1072685 Basilea psittacipulmonis DSM 24701 0.00 2 0 G 517 Bordetella 0.00 2 2 S 519 Bordetella parapertussis 0.00 2 0 G 152267 Pigmentiphaga 0.00 2 2 S 1940612 Pigmentiphaga aceris 0.01 4 0 F 2975441 Sphaerotilaceae 0.00 3 2 G 93681 Roseateles 0.00 1 0 G1 2626991 unclassified Roseateles 0.00 1 1 S 2995138 Roseateles sp. SL47 0.00 1 0 G 34102 Sphaerotilus 0.00 1 1 S 2914710 Sphaerotilus microaerophilus 0.05 36 0 C1 119066 Betaproteobacteria incertae sedis 0.04 28 0 G 1301080 Candidatus Nasuia 0.04 28 28 S 1160784 Candidatus Nasuia deltocephalinicola 0.01 8 0 G 1381133 Candidatus Profftella 0.01 8 8 S 2661583 Candidatus Profftella armatura (Diaphorina cf. continua) 0.04 28 1 O 206351 Neisseriales 0.03 22 3 F 481 Neisseriaceae 0.02 11 0 G 2593687 Aquella 0.02 11 11 S 2067065 Aquella oligotrophica 0.01 8 1 G 482 Neisseria 0.00 3 3 S 487 Neisseria meningitidis 0.00 3 0 G1 2623750 unclassified Neisseria 0.00 3 3 S 2912675 Neisseria sp. Dent CA1/247 0.00 1 1 S 485 Neisseria gonorrhoeae 0.00 3 3 F 2897177 Chitinibacteraceae 0.00 1 0 F 1499392 Chromobacteriaceae 0.00 1 0 G 57739 Vogesella 0.00 1 0 G1 2684990 unclassified Vogesella 0.00 1 1 S 2877939 Vogesella sp. XCS3 0.00 1 0 F 2897176 Aquaspirillaceae 0.00 1 0 G 168470 Laribacter 0.00 1 0 S 168471 Laribacter hongkongensis 0.00 1 1 S1 557598 Laribacter hongkongensis HLHK9 0.03 20 0 O 32003 Nitrosomonadales 0.03 18 0 F 32011 Methylophilaceae 0.01 8 4 G 16 Methylophilus 0.01 4 4 S 17 Methylophilus methylotrophus 0.01 8 0 G 359407 Methylotenera 0.01 8 0 S 359408 Methylotenera mobilis 0.01 8 8 S1 583345 Methylotenera mobilis JLW8 0.00 2 0 G 404 Methylobacillus 0.00 2 0 S 405 Methylobacillus flagellatus 0.00 2 2 S1 265072 Methylobacillus flagellatus KT 0.00 1 1 F 206379 Nitrosomonadaceae 0.00 1 0 F 2008793 Sterolibacteriaceae 0.00 1 0 G 3050898 Sulfuricystis 0.00 1 1 S 2211108 Sulfuricystis multivorans 0.02 11 0 C 1807140 Acidithiobacillia 0.02 11 0 O 225057 Acidithiobacillales 0.02 11 0 F 225058 Acidithiobacillaceae 0.02 11 10 G 119977 Acidithiobacillus 0.00 1 0 G1 2614800 unclassified Acidithiobacillus 0.00 1 1 S 2994951 Acidithiobacillus sp. AMEEHan 0.00 1 0 C 580370 Zetaproteobacteria 0.00 1 0 O 580371 Mariprofundales 0.00 1 0 F 580372 Mariprofundaceae 0.00 1 1 G 377315 Mariprofundus 16.28 11632 14 D1 1783272 Terrabacteria group 15.34 10962 43 P 1239 Bacillota 15.00 10719 11 C 91061 Bacilli 14.08 10066 6 O 186826 Lactobacillales 13.67 9768 0 F 81852 Enterococcaceae 13.67 9768 0 G 1350 Enterococcus 13.67 9767 9767 S 1351 Enterococcus faecalis 0.00 1 1 S 1352 Enterococcus faecium 0.34 246 0 F 1300 Streptococcaceae 0.34 246 114 G 1301 Streptococcus 0.12 83 75 S 1308 Streptococcus thermophilus 0.01 8 8 S1 767463 Streptococcus thermophilus ND03 0.01 10 10 S 1314 Streptococcus pyogenes 0.01 8 0 G1 671232 Streptococcus anginosus group 0.01 8 8 S 1328 Streptococcus anginosus 0.01 6 6 S 68892 Streptococcus infantis 0.01 5 5 S 2490633 Streptococcus periodonticum 0.01 4 4 S 1311 Streptococcus agalactiae 0.00 2 1 S 1313 Streptococcus pneumoniae 0.00 1 1 S1 869311 Streptococcus pneumoniae SPN032672 0.00 2 2 S 1345 Streptococcus ferus 0.00 2 2 S 2021971 Streptococcus respiraculi 0.00 2 2 S 1348 Streptococcus parauberis 0.00 2 0 G1 2608887 unclassified Streptococcus 0.00 1 1 S 2664091 Streptococcus sp. zg-86 0.00 1 1 S 3028082 Streptococcus sp. 29896 0.00 2 2 S 1811193 Streptococcus pantholopis 0.00 1 1 S 1307 Streptococcus suis 0.00 1 1 S 1305 Streptococcus sanguinis 0.00 1 1 S 1304 Streptococcus salivarius 0.00 1 1 S 1111760 Streptococcus troglodytae 0.06 45 4 F 33958 Lactobacillaceae 0.02 14 4 G 1578 Lactobacillus 0.01 4 4 S 47770 Lactobacillus crispatus 0.00 3 1 G1 2620435 unclassified Lactobacillus 0.00 1 1 S 1545702 Lactobacillus sp. wkB8 0.00 1 1 S 2879107 Lactobacillus sp. IBH004 0.00 2 2 S 267818 Lactobacillus kefiranofaciens 0.00 1 1 S 147802 Lactobacillus iners 0.02 13 11 G 1243 Leuconostoc 0.00 2 2 S 1252 Leuconostoc carnosum 0.01 5 0 G 2767887 Ligilactobacillus 0.00 2 2 S 1605 Ligilactobacillus animalis 0.00 2 2 S 1624 Ligilactobacillus salivarius 0.00 1 0 S 1622 Ligilactobacillus murinus 0.00 1 1 S1 1235801 Ligilactobacillus murinus ASF361 0.01 4 1 G 46255 Weissella 0.00 3 3 S 137591 Weissella cibaria 0.00 3 3 G 2742598 Limosilactobacillus 0.00 1 0 G 2759736 Lacticaseibacillus 0.00 1 1 S 1597 Lacticaseibacillus paracasei 0.00 1 1 G 2767842 Lactiplantibacillus 0.00 1 0 F 186828 Carnobacteriaceae 0.00 1 0 G 117563 Granulicatella 0.00 1 1 S 46124 Granulicatella adiacens 0.90 642 45 O 1385 Bacillales 0.43 309 26 F 186817 Bacillaceae 0.17 124 3 G 1386 Bacillus 0.09 65 2 G1 653685 Bacillus subtilis group 0.05 33 31 S 1423 Bacillus subtilis 0.00 1 1 S1 86029 Bacillus subtilis subsp. natto 0.00 1 1 S1 135461 Bacillus subtilis subsp. subtilis 0.04 26 0 G2 1938374 Bacillus amyloliquefaciens group 0.03 22 22 S 492670 Bacillus velezensis 0.01 4 4 S 1390 Bacillus amyloliquefaciens 0.00 3 3 S 483913 Bacillus inaquosorum 0.00 1 1 S 1402 Bacillus licheniformis 0.04 30 1 G1 86661 Bacillus cereus group 0.02 15 15 S 1392 Bacillus anthracis 0.01 5 4 S 1396 Bacillus cereus 0.00 1 1 S1 1003239 Bacillus cereus C1L 0.01 5 3 S 1428 Bacillus thuringiensis 0.00 1 1 S1 180850 Bacillus thuringiensis serovar indiana 0.00 1 1 S1 412694 Bacillus thuringiensis str. Al Hakam 0.00 3 3 S 2026191 Bacillus luti 0.00 1 0 G2 2750818 unclassified Bacillus cereus group 0.00 1 1 S 1892404 Bacillus sp. ABP14 0.04 26 0 G1 185979 unclassified Bacillus (in: firmicutes) 0.03 24 24 S 2841656 Bacillus sp. ZHX3 0.00 2 2 S 2874284 Bacillus sp. CRB-7 0.07 48 39 G 2837504 Heyndrickxia 0.01 9 9 S 1398 Heyndrickxia coagulans 0.04 32 32 G 1055323 Aeribacillus 0.02 15 1 G 400634 Lysinibacillus 0.02 12 12 S 2086577 Lysinibacillus timonensis 0.00 1 1 S 1421 Lysinibacillus sphaericus 0.00 1 1 S 2590012 Lysinibacillus agricola 0.02 14 0 G 2005375 Alkalicoccus 0.02 14 14 S 1667239 Alkalicoccus halolimnae 0.01 10 10 G 2893057 Shouchella 0.01 8 0 G 175304 Lentibacillus 0.01 7 7 S 1472767 Lentibacillus amyloliquefaciens 0.00 1 0 G1 2614679 unclassified Lentibacillus 0.00 1 1 S 2518176 Lentibacillus sp. CBA3610 0.01 8 0 G 2800373 Priestia 0.01 8 8 S 1404 Priestia megaterium 0.01 7 0 G 84406 Virgibacillus 0.01 6 6 S 447199 Virgibacillus salarius 0.00 1 0 G1 2620237 unclassified Virgibacillus 0.00 1 1 S 2700081 Virgibacillus sp. MSP4-1 0.01 4 0 G 1433999 Domibacillus 0.01 4 0 G1 2632383 unclassified Domibacillus 0.01 4 4 S 3077789 Domibacillus sp. DTU_2020_1001157_1_SI_ALB_TIR_016 0.01 4 0 G 150247 Anoxybacillus 0.00 2 2 G1 2639704 unclassified Anoxybacillus 0.00 1 0 S 33934 Anoxybacillus flavithermus 0.00 1 1 S1 491915 Anoxybacillus flavithermus WK1 0.00 1 1 S 247480 Anoxybacillus caldiproteolyticus 0.00 2 0 G 45667 Halobacillus 0.00 2 2 S 2932258 Halobacillus shinanisalinarum 0.00 2 0 G 2675230 Cytobacillus 0.00 1 1 S 1399 Cytobacillus firmus 0.00 1 1 S 665099 Cytobacillus oceanisediminis 0.00 1 0 G 379065 Caldalkalibacillus 0.00 1 0 S 296745 Caldalkalibacillus thermarum 0.00 1 1 S1 986075 Caldalkalibacillus thermarum TA2.A1 0.00 1 0 G 2893055 Halalkalibacterium (ex Joshi et al. 2022) 0.00 1 0 S 86665 Halalkalibacterium halodurans 0.00 1 1 S1 272558 Halalkalibacterium halodurans C-125 0.00 1 1 G 2675231 Mesobacillus 0.00 1 1 G 3033930 Fervidibacillus 0.00 1 1 G 129337 Geobacillus 0.36 260 3 F 90964 Staphylococcaceae 0.36 256 63 G 1279 Staphylococcus 0.21 152 152 S 1280 Staphylococcus aureus 0.02 11 11 S 29388 Staphylococcus capitis 0.01 6 6 S 70255 Staphylococcus condimenti 0.01 4 4 S 1283 Staphylococcus haemolyticus 0.01 4 4 S 170573 Staphylococcus pettenkoferi 0.01 4 4 S 46126 Staphylococcus chromogenes 0.00 3 3 S 45972 Staphylococcus pasteuri 0.00 2 2 S 1282 Staphylococcus epidermidis 0.00 2 0 G1 2815305 Staphylococcus intermedius group 0.00 2 2 S 283734 Staphylococcus pseudintermedius 0.00 2 2 S 1290 Staphylococcus hominis 0.00 2 2 S 28035 Staphylococcus lugdunensis 0.00 1 1 S 155085 Staphylococcus lutrae 0.00 1 0 G 2803850 Mammaliicoccus 0.00 1 1 S 1296 Mammaliicoccus sciuri 0.03 21 0 F 186822 Paenibacillaceae 0.03 20 1 G 44249 Paenibacillus 0.01 10 0 G1 185978 unclassified Paenibacillus 0.01 7 7 S 715179 Paenibacillus sp. sptzw28 0.00 3 3 S 2921652 Paenibacillus sp. FSL R5-0636 0.01 5 5 S 1406 Paenibacillus polymyxa 0.00 1 1 S 44250 Paenibacillus alvei 0.00 1 1 S 1778678 Paenibacillus psychroresistens 0.00 1 1 S 2509456 Paenibacillus protaetiae 0.00 1 1 S 2565926 Paenibacillus algicola 0.00 1 0 F1 85151 Aneurinibacillus group 0.00 1 0 G 55079 Aneurinibacillus 0.00 1 1 S 1500254 Aneurinibacillus soli 0.00 2 0 F 186821 Sporolactobacillaceae 0.00 2 0 G 2077 Sporolactobacillus 0.00 2 2 S 269673 Sporolactobacillus terrae 0.00 1 0 F 186818 Planococcaceae 0.00 1 1 G 1372 Planococcus 0.00 1 0 F 186820 Listeriaceae 0.00 1 0 G 1637 Listeria 0.00 1 1 S 1639 Listeria monocytogenes 0.00 1 0 F 186823 Alicyclobacillaceae 0.00 1 0 G 29330 Alicyclobacillus 0.00 1 1 S 2931921 Alicyclobacillus mengziensis 0.00 1 0 O1 539002 Bacillales incertae sedis 0.00 1 0 F 539003 Bacillales Family X. Incertae Sedis 0.00 1 0 G 1609627 Hydrogenibacillus 0.00 1 0 G1 2773237 unclassified Hydrogenibacillus 0.00 1 1 S 2866627 Hydrogenibacillus sp. N12 0.00 1 0 F 539738 Gemellaceae 0.00 1 1 G 1378 Gemella 0.14 98 0 C 1737404 Tissierellia 0.14 98 0 O 1737405 Tissierellales 0.14 98 1 F 1570339 Peptoniphilaceae 0.06 40 1 G 165779 Anaerococcus 0.03 20 20 S 1755241 Anaerococcus nagyae 0.03 19 0 S 33034 Anaerococcus prevotii 0.03 19 19 S1 525919 Anaerococcus prevotii DSM 20548 0.04 32 0 G 150022 Finegoldia 0.04 32 32 S 1260 Finegoldia magna 0.03 24 1 G 162289 Peptoniphilus 0.01 9 9 S 54006 Peptoniphilus ivorii 0.01 8 8 S 3036303 Peptoniphilus genitalis 0.01 6 6 S 54005 Peptoniphilus harei 0.00 1 0 G 543311 Parvimonas 0.00 1 1 S 33033 Parvimonas micra 0.07 48 0 C 909932 Negativicutes 0.06 46 0 O 1843489 Veillonellales 0.06 46 0 F 31977 Veillonellaceae 0.04 30 29 G 906 Megasphaera 0.00 1 1 S 2144175 Megasphaera stantonii 0.01 8 7 G 29465 Veillonella 0.00 1 1 S 29466 Veillonella parvula 0.01 8 1 G 39948 Dialister 0.01 5 5 S 487173 Dialister succinatiphilus 0.00 2 2 S 39950 Dialister pneumosintes 0.00 2 0 O 909929 Selenomonadales 0.00 1 0 F 1843490 Sporomusaceae 0.00 1 0 G 81463 Anaeromusa 0.00 1 0 G1 673272 environmental samples 0.00 1 1 S 673273 uncultured Anaeromusa sp. 0.00 1 0 F 1843491 Selenomonadaceae 0.00 1 0 G 970 Selenomonas 0.00 1 0 S 971 Selenomonas ruminantium 0.00 1 0 S1 114197 Selenomonas ruminantium subsp. lactilytica 0.00 1 1 S2 927704 Selenomonas ruminantium subsp. lactilytica TAM6421 0.06 44 1 C 186801 Clostridia 0.05 33 2 O 186802 Eubacteriales 0.02 11 0 F 31979 Clostridiaceae 0.02 11 0 G 1485 Clostridium 0.01 6 6 S 1716543 Clostridium thermarum 0.01 4 4 S 1502 Clostridium perfringens 0.00 1 0 S 1491 Clostridium botulinum 0.00 1 1 S1 1408283 Clostridium botulinum CDC_1436 0.01 9 1 F 186807 Peptococcaceae 0.01 8 0 G 2924872 Acididesulfobacillus 0.01 8 8 S 1561005 Acididesulfobacillus acetoxydans 0.01 5 0 F 216572 Oscillospiraceae 0.01 4 0 G 1263 Ruminococcus 0.01 4 4 S 1161942 Ruminococcus champanellensis 0.00 1 0 G 459786 Oscillibacter 0.00 1 1 S 2763056 Oscillibacter hominis 0.00 3 0 F 186806 Eubacteriaceae 0.00 3 3 G 33951 Acetobacterium 0.00 1 1 F 31984 Heliobacteriaceae 0.00 1 0 F 3046368 Aristaeellaceae 0.00 1 1 G 3046369 Aristaeella 0.00 1 0 F 2937909 Desulfitobacteriaceae 0.00 1 1 G 56112 Dehalobacter 0.00 3 0 O 68295 Thermoanaerobacterales 0.00 3 0 F 543372 Thermoanaerobacterales Family IV. Incertae Sedis 0.00 3 0 G 252965 Mahella 0.00 3 0 S 252966 Mahella australiensis 0.00 3 3 S1 697281 Mahella australiensis 50-1 BON 0.00 3 0 O 3085636 Lachnospirales 0.00 2 1 F 186803 Lachnospiraceae 0.00 1 0 G 572511 Blautia 0.00 1 0 G1 2648079 unclassified Blautia 0.00 1 1 S 2479767 Blautia sp. SC05B48 0.00 1 0 F 3018741 Cellulosilyticaceae 0.00 1 1 G 698776 Cellulosilyticum 0.00 2 0 O 53433 Halanaerobiales 0.00 2 0 F 53434 Halobacteroidaceae 0.00 2 0 G 42417 Halobacteroides 0.00 2 0 S 42422 Halobacteroides halobius 0.00 2 2 S1 748449 Halobacteroides halobius DSM 5150 0.00 1 0 O 3082720 Peptostreptococcales 0.00 1 0 F 3030910 Anaerovoracaceae 0.00 1 1 G 86331 Mogibacterium 0.00 1 0 O 3085656 Monoglobales 0.00 1 0 F 3085657 Monoglobaceae 0.00 1 0 G 2039302 Monoglobus 0.00 1 1 S 1981510 Monoglobus pectinilyticus 0.01 10 0 C 526524 Erysipelotrichia 0.01 10 0 O 526525 Erysipelotrichales 0.01 10 0 F 128827 Erysipelotrichaceae 0.01 9 0 G 123375 Solobacterium 0.01 9 9 S 102148 Solobacterium moorei 0.00 1 0 G 1918536 Longicatena 0.00 1 1 S 1796635 Longicatena caecimuris 0.87 620 0 P 201174 Actinomycetota 0.87 619 50 C 1760 Actinomycetes 0.47 334 8 O 85009 Propionibacteriales 0.46 326 10 F 31957 Propionibacteriaceae 0.41 295 7 G 1912216 Cutibacterium 0.40 287 285 S 1747 Cutibacterium acnes 0.00 1 1 S1 1122995 Cutibacterium acnes DSM 1897 0.00 1 1 S1 1734925 Cutibacterium acnes subsp. acnes 0.00 1 1 S 2559073 Cutibacterium modestum 0.02 12 0 G 1743 Propionibacterium 0.01 10 10 S 556499 Propionibacterium acidifaciens 0.00 2 2 S 1744 Propionibacterium freudenreichii 0.01 6 5 G 29404 Microlunatus 0.00 1 1 S 546874 Microlunatus sagamiharensis 0.00 3 0 G 1912215 Acidipropionibacterium 0.00 3 3 S 1749 Acidipropionibacterium jensenii 0.15 109 0 O 85007 Mycobacteriales 0.08 56 0 F 1653 Corynebacteriaceae 0.08 56 29 G 1716 Corynebacterium 0.01 8 8 S 1737425 Corynebacterium provencense 0.00 3 0 S 1717 Corynebacterium diphtheriae 0.00 3 3 S1 257309 Corynebacterium diphtheriae NCTC 13129 0.00 3 3 S 38284 Corynebacterium accolens 0.00 3 0 G1 2624378 unclassified Corynebacterium 0.00 3 3 S 1487956 Corynebacterium sp. ATCC 6931 0.00 2 2 S 2080740 Corynebacterium yudongzhengii 0.00 1 1 S 2055947 Corynebacterium heidelbergense 0.00 1 1 S 38289 Corynebacterium jeikeium 0.00 1 1 S 1072256 Corynebacterium uterequi 0.00 1 1 S 161895 Corynebacterium phocae 0.00 1 1 S 43771 Corynebacterium urealyticum 0.00 1 1 S 1758466 Corynebacterium faecale 0.00 1 0 S 441501 Corynebacterium massiliense 0.00 1 1 S1 1121364 Corynebacterium massiliense DSM 45435 0.00 1 1 S 71254 Corynebacterium confusum 0.05 33 0 F 85025 Nocardiaceae 0.05 33 6 G 1827 Rhodococcus 0.04 27 27 S 37919 Rhodococcus opacus 0.03 19 0 F 1762 Mycobacteriaceae 0.03 19 0 G 1763 Mycobacterium 0.02 17 0 G1 77643 Mycobacterium tuberculosis complex 0.02 17 17 S 1773 Mycobacterium tuberculosis 0.00 2 0 G1 2993898 Mycobacterium ulcerans group 0.00 2 2 S 133549 Mycobacterium shottsii 0.00 1 0 F 2805586 Lawsonellaceae 0.00 1 0 G 1847725 Lawsonella 0.00 1 1 S 1528099 Lawsonella clevelandensis 0.11 76 4 O 85006 Micrococcales 0.04 31 0 F 85020 Dermabacteraceae 0.04 28 25 G 36739 Dermabacter 0.00 3 3 S 1630135 Dermabacter vaginalis 0.00 3 0 G 43668 Brachybacterium 0.00 3 2 G1 2623841 unclassified Brachybacterium 0.00 1 1 S 3023517 Brachybacterium sp. GPGPB12 0.04 30 17 F 1268 Micrococcaceae 0.01 8 3 G 32207 Rothia 0.00 2 2 S 43675 Rothia mucilaginosa 0.00 2 2 S 169480 Rothia amarae 0.00 1 1 S 2047 Rothia dentocariosa 0.00 2 1 G 1663 Arthrobacter 0.00 1 0 G1 235627 unclassified Arthrobacter 0.00 1 1 S 2991715 Arthrobacter sp. ATA002 0.00 1 1 G 57493 Kocuria 0.00 1 1 G 57494 Nesterenkonia 0.00 1 1 G 1269 Micrococcus 0.01 5 1 F 85023 Microbacteriaceae 0.00 2 0 G 33882 Microbacterium 0.00 2 2 S 3079935 Microbacterium limosum 0.00 1 1 G 33886 Rathayibacter 0.00 1 1 G 55968 Leucobacter 0.00 2 0 F 85016 Cellulomonadaceae 0.00 2 2 G 1707 Cellulomonas 0.00 2 0 F 2805590 Ornithinimicrobiaceae 0.00 2 0 G 265976 Serinicoccus 0.00 2 0 S 247333 Serinicoccus marinus 0.00 2 2 S1 1123251 Serinicoccus marinus DSM 15273 0.00 1 0 F 2805591 Tropherymataceae 0.00 1 0 G 2038 Tropheryma 0.00 1 1 S 2039 Tropheryma whipplei 0.00 1 0 F 85017 Promicromonosporaceae 0.00 1 0 G 186188 Xylanimonas 0.00 1 1 S 2509457 Xylanimonas protaetiae 0.05 33 0 O 85011 Kitasatosporales 0.05 33 0 F 2062 Streptomycetaceae 0.04 30 1 G 1883 Streptomyces 0.03 25 19 G1 2593676 unclassified Streptomyces 0.00 2 2 S 2933779 Streptomyces sp. WAC00303 0.00 1 1 S 2750025 Streptomyces sp. CB00271 0.00 1 1 S 2903645 Streptomyces sp. NBC_00310 0.00 1 1 S 2975733 Streptomyces sp. NBC_00385 0.00 1 1 S 3075198 Streptomyces sp. ITFR-16 0.00 1 1 S 1690221 Streptomyces spongiicola 0.00 1 1 S 68239 Streptomyces mirabilis 0.00 1 1 S 67304 Streptomyces griseorubiginosus 0.00 1 0 G1 1477431 Streptomyces albidoflavus group 0.00 1 1 S 1886 Streptomyces albidoflavus 0.00 3 0 G 2805681 Yinghuangia 0.00 3 0 G1 2846306 unclassified Yinghuangia 0.00 3 3 S 2896848 Yinghuangia sp. ASG 101 0.01 10 0 O 2037 Actinomycetales 0.01 10 1 F 2049 Actinomycetaceae 0.01 6 5 G 2529408 Schaalia 0.00 1 1 S 1660 Schaalia odontolytica 0.00 1 1 G 1654 Actinomyces 0.00 1 1 G 1069494 Trueperella 0.00 1 1 G 1522056 Flaviflexus 0.00 3 0 O 85010 Pseudonocardiales 0.00 3 0 F 2070 Pseudonocardiaceae 0.00 1 0 G 1847 Pseudonocardia 0.00 1 0 S 240495 Pseudonocardia dioxanivorans 0.00 1 1 S1 675635 Pseudonocardia dioxanivorans CB1190 0.00 1 0 G 1851 Saccharomonospora 0.00 1 0 S 1852 Saccharomonospora viridis 0.00 1 1 S1 471857 Saccharomonospora viridis DSM 43017 0.00 1 0 G 43356 Kutzneria 0.00 1 1 S 1483604 Kutzneria chonburiensis 0.00 2 0 O 85004 Bifidobacteriales 0.00 2 0 F 31953 Bifidobacteriaceae 0.00 2 0 G 1678 Bifidobacterium 0.00 2 0 S 216816 Bifidobacterium longum 0.00 2 2 S1 1682 Bifidobacterium longum subsp. infantis 0.00 1 0 O 85013 Frankiales 0.00 1 1 F 74712 Frankiaceae 0.00 1 0 O 2039638 Candidatus Nanopelagicales 0.00 1 1 F 2162846 Candidatus Nanopelagicaceae 0.00 1 0 C 908620 Nitriliruptoria 0.00 1 0 O 1747768 Egibacterales 0.00 1 0 F 1747769 Egibacteraceae 0.00 1 0 G 1747770 Egibacter 0.00 1 1 S 1670831 Egibacter rhizosphaerae 0.03 18 0 P 200795 Chloroflexota 0.02 13 0 C 32061 Chloroflexia 0.02 13 0 O 32064 Chloroflexales 0.02 13 0 O1 1508594 Chloroflexineae 0.02 13 0 F 1106 Chloroflexaceae 0.02 13 0 G 1107 Chloroflexus 0.02 13 0 S 152260 Chloroflexus aggregans 0.02 13 13 S1 326427 Chloroflexus aggregans DSM 9485 0.01 4 0 C 2682225 Tepidiformia 0.01 4 0 O 2682226 Tepidiformales 0.01 4 0 F 2682227 Tepidiformaceae 0.01 4 4 G 2682228 Tepidiforma 0.00 1 0 C 1495646 Thermoflexia 0.00 1 0 O 1495647 Thermoflexales 0.00 1 0 F 1495648 Thermoflexaceae 0.00 1 0 G 1495649 Thermoflexus 0.00 1 1 S 1495650 Thermoflexus hugenholtzii 0.01 10 0 D2 1798711 Cyanobacteriota/Melainabacteria group 0.01 10 0 P 1117 Cyanobacteriota 0.01 10 1 C 3028117 Cyanophyceae 0.01 6 0 C1 1301283 Oscillatoriophycideae 0.00 3 0 O 1118 Chroococcales 0.00 2 0 F 1890450 Aphanothecaceae 0.00 2 0 G 1453359 Candidatus Atelocyanobacterium 0.00 2 0 S 713887 Candidatus Atelocyanobacterium thalassa 0.00 2 2 S1 1285375 cyanobacterium endosymbiont of Braarudosphaera bigelowii 0.00 1 0 F 1890449 Microcystaceae 0.00 1 0 G 1125 Microcystis 0.00 1 0 G1 2643300 unclassified Microcystis 0.00 1 1 S 1967666 Microcystis sp. MC19 0.00 3 0 O 1150 Oscillatoriales 0.00 3 0 F 2934961 Sirenicapillariaceae 0.00 3 0 G 2596745 Limnospira 0.00 3 0 S 147322 Limnospira indica 0.00 2 2 S1 2760438 Limnospira indica BM01 0.00 1 1 S1 376219 Limnospira indica PCC 8005 0.00 1 1 O 1161 Nostocales 0.00 1 0 O 1890424 Synechococcales 0.00 1 0 F 1890426 Synechococcaceae 0.00 1 0 G 1129 Synechococcus 0.00 1 1 S 32046 Synechococcus elongatus 0.00 1 0 O 3039985 Nodosilineales 0.00 1 0 F 3039986 Nodosilineaceae 0.00 1 0 G 1120752 Nodosilinea 0.00 1 0 G1 2628167 unclassified Nodosilinea 0.00 1 1 S 3037479 Nodosilinea sp. E11 0.01 6 2 P 544448 Mycoplasmatota 0.00 3 0 O 2790996 Mycoplasmoidales 0.00 3 0 F 2790998 Mycoplasmoidaceae 0.00 2 0 G 2791001 Malacoplasma 0.00 2 0 S 28227 Malacoplasma penetrans 0.00 2 2 S1 272633 Malacoplasma penetrans HF-2 0.00 1 1 G 2129 Ureaplasma 0.00 1 0 C 31969 Mollicutes 0.00 1 0 O 2085 Mycoplasmatales 0.00 1 0 F 2092 Mycoplasmataceae 0.00 1 0 G 2093 Mycoplasma 0.00 1 0 G1 2683645 unclassified Mycoplasma 0.00 1 1 S 1749074 Mycoplasma sp. (ex Biomphalaria glabrata) 0.00 1 0 P 1297 Deinococcota 0.00 1 0 C 188787 Deinococci 0.00 1 0 O 118964 Deinococcales 0.00 1 0 F 183710 Deinococcaceae 0.00 1 0 G 1298 Deinococcus 0.00 1 1 S 200252 Deinococcus aetherius 0.00 1 0 P 67819 Armatimonadota 0.00 1 0 C 1663419 Fimbriimonadia 0.00 1 0 O 1663425 Fimbriimonadales 0.00 1 0 F 1663426 Fimbriimonadaceae 0.00 1 0 G 1005038 Fimbriimonas 0.00 1 0 S 1005039 Fimbriimonas ginsengisoli 0.00 1 1 S1 661478 Fimbriimonas ginsengisoli Gsoil 348 4.41 3151 0 D1 1783270 FCB group 4.40 3146 0 D2 68336 Bacteroidota/Chlorobiota group 4.40 3145 1 P 976 Bacteroidota 4.29 3064 0 C 768503 Cytophagia 4.29 3064 1 O 768507 Cytophagales 4.27 3054 0 F 89373 Cytophagaceae 4.27 3054 0 G 107 Spirosoma 4.27 3054 3054 S 2666025 Spirosoma endbachense 0.01 8 0 F 2762286 Fulvivirgaceae 0.01 8 0 G 1433993 Chryseolinea 0.01 8 8 S 2321403 Chryseolinea soli 0.00 1 0 F 1853232 Hymenobacteraceae 0.00 1 0 G 89966 Hymenobacter 0.00 1 0 G1 2615202 unclassified Hymenobacter 0.00 1 1 S 2987688 Hymenobacter sp. YIM 151858-1 0.07 48 0 C 200643 Bacteroidia 0.06 40 0 O 171549 Bacteroidales 0.05 35 1 F 171552 Prevotellaceae 0.04 29 0 G 2974257 Hoylesella 0.04 29 29 S 28127 Hoylesella buccalis 0.00 3 0 G 2974251 Segatella 0.00 3 3 S 28135 Segatella oris 0.00 2 0 G 838 Prevotella 0.00 1 1 S 28129 Prevotella denticola 0.00 1 1 S 28132 Prevotella melaninogenica 0.01 4 0 F 815 Bacteroidaceae 0.01 4 0 G 816 Bacteroides 0.01 4 4 S 818 Bacteroides thetaiotaomicron 0.00 1 0 F 171550 Rikenellaceae 0.00 1 0 G 1647173 Acetobacteroides 0.00 1 0 G1 1760810 environmental samples 0.00 1 1 S 1760811 uncultured Acetobacteroides sp. 0.01 8 0 O 1970189 Marinilabiliales 0.01 7 0 F 558415 Marinilabiliaceae 0.01 6 0 G 3129724 Xiashengella 0.01 6 6 S 2949635 Xiashengella succiniciproducens 0.00 1 0 G 1193324 Alkalitalea 0.00 1 1 S 889453 Alkalitalea saponilacus 0.00 1 0 F 1471398 Prolixibacteraceae 0.00 1 0 G 1254401 Sunxiuqinia 0.00 1 0 G1 1573824 environmental samples 0.00 1 1 S 1573825 uncultured Sunxiuqinia sp. 0.04 30 0 C 117743 Flavobacteriia 0.04 30 0 O 200644 Flavobacteriales 0.04 30 4 F 49546 Flavobacteriaceae 0.03 24 0 G 286104 Winogradskyella 0.03 24 24 S 2686077 Winogradskyella forsetii 0.00 1 0 G 237 Flavobacterium 0.00 1 1 S 2175091 Flavobacterium album 0.00 1 0 G 326319 Dokdonia 0.00 1 0 G1 2615033 unclassified Dokdonia 0.00 1 1 S 983548 Dokdonia sp. 4H-3-7-5 0.00 2 0 C 1853228 Chitinophagia 0.00 2 0 O 1853229 Chitinophagales 0.00 2 0 F 563835 Chitinophagaceae 0.00 2 0 G 1649506 Thermoflavifilum 0.00 2 0 G1 3099314 unclassified Thermoflavifilum 0.00 2 2 S 1968839 Thermoflavifilum sp. 0.00 1 0 P 1853220 Rhodothermota 0.00 1 0 C 1853222 Rhodothermia 0.00 1 1 O 1853224 Rhodothermales 0.01 5 0 P 456828 Candidatus Cloacimonadota 0.01 5 0 C 3039863 Candidatus Cloacimonadia 0.01 5 0 O 3039864 Candidatus Cloacimonadales 0.01 5 0 F 3039865 Candidatus Cloacimonadaceae 0.01 5 0 G 456826 Candidatus Cloacimonas 0.01 5 0 S 456827 Candidatus Cloacimonas acidaminovorans 0.01 5 5 S1 459349 Candidatus Cloacimonas acidaminovorans str. Evry 0.31 223 0 P 508458 Synergistota 0.31 223 0 C 649775 Synergistia 0.31 223 0 O 649776 Synergistales 0.31 222 0 F 649777 Synergistaceae 0.31 222 0 G 81411 Aminomonas 0.31 222 0 S 81412 Aminomonas paucivorans 0.31 222 222 S1 584708 Aminomonas paucivorans DSM 12260 0.00 1 0 F 3029085 Aminithiophilaceae 0.00 1 0 G 3029078 Aminithiophilus 0.00 1 1 S 3029084 Aminithiophilus ramosus 0.11 78 0 P 29547 Campylobacterota 0.11 78 0 C 3031852 Epsilonproteobacteria 0.11 78 0 O 213849 Campylobacterales 0.10 70 0 F 72293 Helicobacteraceae 0.10 70 3 G 209 Helicobacter 0.08 60 60 S 213 Helicobacter cinaedi 0.01 6 6 S 210 Helicobacter pylori 0.00 1 1 S 135569 Helicobacter apodemus 0.01 7 0 F 72294 Campylobacteraceae 0.01 7 0 G 194 Campylobacter 0.01 6 6 S 449520 Campylobacter canadensis 0.00 1 0 S 522485 Campylobacter avium 0.00 1 1 S1 522484 Campylobacter avium LMG 24591 0.00 1 0 F 2771471 Sulfurimonadaceae 0.00 1 0 G 202746 Sulfurimonas 0.00 1 1 G1 2623549 unclassified Sulfurimonas 0.06 41 0 D1 1783257 PVC group 0.03 20 0 P 203682 Planctomycetota 0.03 20 2 C 203683 Planctomycetia 0.02 17 0 O 2691354 Pirellulales 0.02 15 0 F 2691359 Lacipirellulaceae 0.01 8 0 G 2795781 Aeoliella 0.01 8 8 S 2527972 Aeoliella mucimassa 0.01 6 0 G 1400386 Bythopirellula 0.01 6 6 S 1400387 Bythopirellula goksoeyrii 0.00 1 0 G 2795783 Pirellulimonas 0.00 1 1 S 2528009 Pirellulimonas nuda 0.00 2 0 F 2691357 Pirellulaceae 0.00 2 0 G 2005380 Mariniblastus 0.00 2 2 S 980251 Mariniblastus fucicola 0.00 1 0 O 2691356 Isosphaerales 0.00 1 1 F 1763524 Isosphaeraceae 0.03 18 0 P 74201 Verrucomicrobiota 0.02 12 0 C 203494 Verrucomicrobiia 0.02 12 0 O 48461 Verrucomicrobiales 0.02 12 0 F 203557 Verrucomicrobiaceae 0.02 11 0 G 518753 Luteolibacter 0.02 11 11 S 2728835 Luteolibacter luteus 0.00 1 0 G 1348508 Roseimicrobium 0.00 1 0 G1 2711230 unclassified Roseimicrobium 0.00 1 1 S 2711231 Roseimicrobium sp. ORNL1 0.01 6 0 C 414999 Opitutia 0.01 5 0 O 415001 Puniceicoccales 0.01 5 0 F 3056371 Coraliomargaritaceae 0.01 5 0 G 442430 Coraliomargarita 0.01 5 0 S 395922 Coraliomargarita akajimensis 0.01 5 5 S1 583355 Coraliomargarita akajimensis DSM 45221 0.00 1 0 O 415000 Opitutales 0.00 1 1 F 134623 Opitutaceae 0.00 3 0 P 134625 Kiritimatiellota 0.00 3 0 C 2907184 Tichowtungiia 0.00 3 0 O 2907185 Tichowtungiales 0.00 3 0 F 2907186 Tichowtungiaceae 0.00 3 0 G 2907187 Tichowtungia 0.00 3 3 S 2697043 Tichowtungia aerotolerans 0.05 34 10 P 200940 Thermodesulfobacteriota 0.02 13 0 C 3031449 Desulfovibrionia 0.02 13 0 O 213115 Desulfovibrionales 0.02 13 0 F 194924 Desulfovibrionaceae 0.01 7 0 G 3126915 Taurinivorans 0.01 7 7 S 2787751 Taurinivorans muris 0.01 6 6 G 2035811 Pseudodesulfovibrio 0.01 8 0 C 3031451 Desulfobulbia 0.01 8 0 O 3024411 Desulfobulbales 0.01 8 0 F 213121 Desulfobulbaceae 0.01 8 0 G 893 Desulfobulbus 0.01 8 8 S 1986146 Desulfobulbus oralis 0.00 2 0 C 3031651 Desulfuromonadia 0.00 1 0 O 69541 Desulfuromonadales 0.00 1 0 F 213421 Desulfuromonadaceae 0.00 1 1 G 890 Desulfuromonas 0.00 1 0 O 3031668 Geobacterales 0.00 1 0 F 213422 Geobacteraceae 0.00 1 0 G 2651583 Geomonas 0.00 1 1 S 2847989 Geomonas subterranea 0.00 1 0 C 3024408 Syntrophobacteria 0.00 1 0 O 213462 Syntrophobacterales 0.00 1 0 F 213465 Syntrophobacteraceae 0.00 1 0 G 29526 Syntrophobacter 0.00 1 0 S 119484 Syntrophobacter fumaroxidans 0.00 1 1 S1 335543 Syntrophobacter fumaroxidans MPOB 0.01 10 0 D1 2323 Bacteria incertae sedis 0.01 10 0 D2 1783234 Bacteria candidate phyla 0.01 10 10 P 95818 Candidatus Saccharibacteria 0.01 10 0 P 2138240 Coprothermobacterota 0.01 10 0 C 2138243 Coprothermobacteria 0.01 10 0 O 2138246 Coprothermobacterales 0.01 10 0 F 2138247 Coprothermobacteraceae 0.01 10 0 G 68335 Coprothermobacter 0.01 10 0 S 35786 Coprothermobacter proteolyticus 0.01 10 10 S1 309798 Coprothermobacter proteolyticus DSM 5265 0.01 8 0 P 57723 Acidobacteriota 0.01 8 0 C 533205 Holophagae 0.01 8 0 O 574975 Holophagales 0.01 8 0 F 574976 Holophagaceae 0.01 8 8 G 44675 Geothrix 0.01 7 0 P 203691 Spirochaetota 0.01 7 0 C 203692 Spirochaetia 0.01 7 0 O 136 Spirochaetales 0.01 5 0 F 2845253 Treponemataceae 0.01 5 0 G 157 Treponema 0.00 3 3 S 165 Treponema saccharophilum 0.00 2 2 S 162 Treponema phagedenis 0.00 2 0 F 1643685 Borreliaceae 0.00 2 2 G 64895 Borreliella 0.00 2 0 P 68297 Dictyoglomota 0.00 2 0 C 203486 Dictyoglomia 0.00 2 0 O 203487 Dictyoglomales 0.00 2 0 F 203488 Dictyoglomaceae 0.00 2 2 G 13 Dictyoglomus 0.00 2 0 P 2818505 Myxococcota 0.00 2 0 P1 3031711 Polyangia 0.00 2 0 O 3031712 Polyangiales 0.00 1 0 F 49 Polyangiaceae 0.00 1 0 G 50 Chondromyces 0.00 1 1 S 52 Chondromyces crocatus 0.00 1 0 F 1055686 Sandaracinaceae 0.00 1 0 G 1055688 Sandaracinus 0.00 1 1 S 927083 Sandaracinus amylolyticus 0.00 1 0 D1 68525 delta/epsilon subdivisions 0.00 1 0 C 28221 Deltaproteobacteria 0.00 1 0 C1 45456 Deltaproteobacteria incertae sedis 0.00 1 0 G 1769732 Dissulfurimicrobium 0.00 1 1 S 1750598 Dissulfurimicrobium hydrothermale 0.00 1 0 P 74152 Elusimicrobiota 0.00 1 0 C 641853 Elusimicrobia 0.00 1 0 O 641854 Elusimicrobiales 0.00 1 0 F 641876 Elusimicrobiaceae 0.00 1 0 G 423604 Elusimicrobium 0.00 1 0 S 423605 Elusimicrobium minutum 0.00 1 1 S1 445932 Elusimicrobium minutum Pei191 0.00 1 0 P 200930 Deferribacterota 0.00 1 0 C 68337 Deferribacteres 0.00 1 0 O 191393 Deferribacterales 0.00 1 0 F 191394 Deferribacteraceae 0.00 1 0 G 53572 Deferribacter 0.00 1 0 S 197162 Deferribacter desulfuricans 0.00 1 1 S1 639282 Deferribacter desulfuricans SSM1