15.98 2179 2179 U 0 unclassified 84.02 11459 5 R 1 root 83.98 11453 1 R1 131567 cellular organisms 83.97 11452 150 D 2 Bacteria 75.52 10300 12 P 1224 Pseudomonadota 73.10 9970 66 C 1236 Gammaproteobacteria 70.43 9605 48 O 91347 Enterobacterales 69.69 9504 7386 F 543 Enterobacteriaceae 11.03 1504 17 G 561 Escherichia 8.70 1186 1151 S 562 Escherichia coli 0.07 10 10 S1 1322345 Escherichia coli ATCC 25922 0.07 9 9 S1 2079157 Escherichia coli O2:H1 0.02 3 1 S1 83334 Escherichia coli O157:H7 0.01 2 2 S2 155864 Escherichia coli O157:H7 str. EDL933 0.02 3 3 S1 2874053 Escherichia coli O25:H1 0.01 2 2 S1 244320 Escherichia coli O55:H7 0.01 2 2 S1 376725 Escherichia coli O103:H2 0.01 2 2 S1 1446600 Escherichia coli O15:H18 0.01 2 2 S1 331112 Escherichia coli HS 0.01 2 2 S1 655817 Escherichia coli ABU 83972 1.99 272 272 S 1499973 Escherichia marmotae 0.14 19 19 S 208962 Escherichia albertii 0.07 10 0 G1 2608889 unclassified Escherichia 0.07 10 10 S 2044467 Escherichia sp. E4742 1.44 196 0 F1 2890311 Klebsiella/Raoultella group 1.42 194 18 G 570 Klebsiella 1.22 167 158 S 573 Klebsiella pneumoniae 0.07 9 9 S1 72407 Klebsiella pneumoniae subsp. pneumoniae 0.03 4 4 S 548 Klebsiella aerogenes 0.03 4 0 S 1463165 Klebsiella quasipneumoniae 0.03 4 4 S1 1667327 Klebsiella quasipneumoniae subsp. quasipneumoniae 0.01 1 1 S 1259973 Klebsiella electrica 0.01 2 0 G 160674 Raoultella 0.01 1 1 S 575 Raoultella planticola 0.01 1 1 S 54291 Raoultella ornithinolytica 1.33 181 8 G 590 Salmonella 0.64 87 9 S 28901 Salmonella enterica 0.57 78 3 S1 59201 Salmonella enterica subsp. enterica 0.16 22 22 S2 2583588 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- 0.12 16 16 S2 600 Salmonella enterica subsp. enterica serovar Thompson 0.07 10 1 S2 611 Salmonella enterica subsp. enterica serovar Heidelberg 0.07 9 9 S3 1124936 Salmonella enterica subsp. enterica serovar Heidelberg str. 41578 0.07 10 0 S2 58096 Salmonella enterica subsp. enterica serovar Bareilly 0.07 10 10 S3 1182177 Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000752 0.07 9 9 S2 2579247 Salmonella enterica subsp. enterica serovar Rough O:-:- 0.02 3 2 S2 90371 Salmonella enterica subsp. enterica serovar Typhimurium 0.01 1 1 S3 1454647 Salmonella enterica subsp. enterica serovar Typhimurium str. USDA-ARS-USMARC-1810 0.01 2 2 S2 90105 Salmonella enterica subsp. enterica serovar Saintpaul 0.01 1 1 S2 149539 Salmonella enterica subsp. enterica serovar Enteritidis 0.01 1 1 S2 913076 Salmonella enterica subsp. enterica serovar Johannesburg 0.01 1 0 S2 1242084 Salmonella enterica subsp. enterica serovar Krefeld 0.01 1 1 S3 1242106 Salmonella enterica subsp. enterica serovar Krefeld str. SA20030536 0.63 86 85 S 54736 Salmonella bongori 0.01 1 1 S1 1299282 Salmonella bongori CFSAN000510 0.56 76 46 G 544 Citrobacter 0.21 28 0 G1 1344959 Citrobacter freundii complex 0.17 23 23 S 546 Citrobacter freundii 0.02 3 3 S 1748967 Citrobacter cronae 0.01 2 2 S 67828 Citrobacter gillenii 0.01 1 1 S 2562449 Citrobacter tructae 0.01 1 1 S 2971264 Citrobacter enshiensis 0.41 56 0 G 547 Enterobacter 0.38 52 0 G1 354276 Enterobacter cloacae complex 0.25 34 34 S 299767 Enterobacter ludwigii 0.10 14 14 S 158836 Enterobacter hormaechei 0.01 2 2 S 61645 Enterobacter asburiae 0.01 2 2 S 208224 Enterobacter kobei 0.03 4 4 S 881260 Enterobacter bugandensis 0.28 38 15 F1 36866 unclassified Enterobacteriaceae 0.08 11 11 S 2675793 Enterobacteriaceae endosymbiont of Plateumaris braccata 0.08 11 11 S 2675787 Enterobacteriaceae endosymbiont of Donacia tomentosa 0.01 1 1 S 2675782 Enterobacteriaceae endosymbiont of Donacia proxima 0.27 37 26 G 620 Shigella 0.07 9 9 S 623 Shigella flexneri 0.01 2 2 S 622 Shigella dysenteriae 0.08 11 0 F1 191675 Enterobacteriaceae incertae sedis 0.08 11 1 F2 84563 ant, tsetse, mealybug, aphid, etc. endosymbionts 0.04 6 0 F3 84564 ant endosymbionts 0.04 5 0 G 203804 Candidatus Blochmanniella 0.03 4 3 G1 711328 unclassified Candidatus Blochmanniella 0.01 1 1 S 1505596 Blochmannia endosymbiont of Polyrhachis (Hedomyrma) turneri 0.01 1 1 S 251540 Candidatus Blochmannia vicinus 0.01 1 0 G 1699619 Candidatus Westeberhardia 0.01 1 1 S 1594731 Candidatus Westeberhardia cardiocondylae 0.02 3 1 F3 146507 aphid secondary symbionts 0.01 1 0 G 568988 Candidatus Regiella 0.01 1 0 G1 3077955 unclassified Candidatus Regiella 0.01 1 1 S 3077956 Candidatus Regiella endosymbiont of Tuberolachnus salignus 0.01 1 1 S 1199245 secondary endosymbiont of Ctenarytaina eucalypti 0.01 1 0 G 472825 Candidatus Purcelliella 0.01 1 1 S 472834 Candidatus Purcelliella pentastirinorum 0.04 6 0 G 1504576 Pseudocitrobacter 0.04 6 6 S 2891570 Pseudocitrobacter corydidari 0.02 3 0 G 1330547 Kosakonia 0.01 2 2 S 208223 Kosakonia cowanii 0.01 1 1 S 1005665 Kosakonia oryzendophytica 0.02 3 0 G 2815296 Jejubacter 0.02 3 3 S 2579935 Jejubacter calystegiae 0.01 2 0 G 1177214 Candidatus Profftia 0.01 1 1 S 1987921 Candidatus Profftia lariciata 0.01 1 0 G1 2735709 unclassified Candidatus Profftia 0.01 1 1 S 2864218 Candidatus Profftia sp. (ex Adelges kitamiensis) 0.01 2 0 G 1048757 Candidatus Moranella 0.01 2 2 S 1048758 Candidatus Moranella endobia 0.01 1 0 G 2303321 Superficieibacter 0.01 1 0 G1 2645744 unclassified Superficieibacter 0.01 1 1 S 3031919 Superficieibacter sp. HKU1 0.01 1 0 G 1335483 Shimwellia 0.01 1 1 S 563 Shimwellia blattae 0.01 1 0 G 409304 Candidatus Ishikawella 0.01 1 0 S 168169 Candidatus Ishikawella capsulata 0.01 1 1 S1 476281 Candidatus Ishikawaella capsulata Mpkobe 0.11 15 2 F 1903414 Morganellaceae 0.04 5 0 G 626 Xenorhabdus 0.02 3 0 S 40577 Xenorhabdus poinarii 0.02 3 3 S1 1354304 Xenorhabdus poinarii G6 0.01 2 0 S 40576 Xenorhabdus bovienii 0.01 2 2 S1 406818 Xenorhabdus bovienii SS-2004 0.02 3 0 G 581 Morganella 0.02 3 3 S 582 Morganella morganii 0.02 3 0 G 637 Arsenophonus 0.01 2 0 G1 2627083 unclassified Arsenophonus 0.01 1 1 S 634121 Arsenophonus symbiont of Ornithomya chloropus 0.01 1 1 S 3066235 Arsenophonus endosymbiont of Crataerina pallida 0.01 1 1 S 638 Arsenophonus nasoniae 0.01 2 0 G 583 Proteus 0.01 2 2 S 584 Proteus mirabilis 0.10 14 0 F 1903411 Yersiniaceae 0.05 7 0 G 613 Serratia 0.02 3 3 S 138074 Serratia symbiotica 0.01 2 2 S 61652 Serratia rubidaea 0.01 1 0 G1 2647522 unclassified Serratia (in: enterobacteria) 0.01 1 1 S 2785630 Serratia sp. CMO1 0.01 1 1 S 614 Serratia liquefaciens 0.05 7 0 G 629 Yersinia 0.05 7 0 G1 1649845 Yersinia pseudotuberculosis complex 0.05 7 0 S 632 Yersinia pestis 0.04 5 5 S1 748678 Yersinia pestis str. Pestoides B 0.01 2 2 S1 649716 Yersinia pestis Pestoides G 0.07 10 0 F 2812006 Bruguierivoracaceae 0.07 10 0 G 84565 Sodalis 0.04 6 6 S 2697027 Sodalis ligni 0.03 4 0 S 1486991 Candidatus Sodalis pierantonius 0.03 4 4 S1 2342 Candidatus Sodalis pierantonius str. SOPE 0.04 6 0 F 1903409 Erwiniaceae 0.02 3 0 G 551 Erwinia 0.01 2 2 S 1922217 Candidatus Erwinia haradaeae 0.01 1 0 G1 2622719 unclassified Erwinia 0.01 1 1 S 215689 Erwinia sp. Ejp617 0.01 2 0 G 53335 Pantoea 0.01 1 1 S 59814 Pantoea dispersa 0.01 1 1 S 1235990 Candidatus Pantoea carbekii 0.01 1 0 G 32199 Buchnera 0.01 1 0 S 9 Buchnera aphidicola 0.01 1 1 S1 1241868 Buchnera aphidicola (Mollitrichosiphum nigrofasciatum) 0.04 5 0 F 1903410 Pectobacteriaceae 0.03 4 1 G 204037 Dickeya 0.01 1 0 S 204038 Dickeya dadantii 0.01 1 1 S1 1224149 Dickeya dadantii NCPPB 3537 0.01 1 1 S 1089444 Dickeya solani 0.01 1 1 S 1778540 Dickeya fangzhongdai 0.01 1 0 G 122277 Pectobacterium 0.01 1 1 S 2488639 Pectobacterium versatile 0.01 2 0 F 3120698 Gallaecimonadaceae 0.01 2 0 G 745410 Gallaecimonas 0.01 2 2 S 3029055 Gallaecimonas kandeliae 0.01 1 0 F 1903412 Hafniaceae 0.01 1 1 G 635 Edwardsiella 0.76 104 0 O 135625 Pasteurellales 0.76 104 9 F 712 Pasteurellaceae 0.48 66 4 G 724 Haemophilus 0.45 62 61 S 729 Haemophilus parainfluenzae 0.01 1 1 S1 888828 Haemophilus parainfluenzae ATCC 33392 0.15 20 1 G 713 Actinobacillus 0.12 17 0 S 718 Actinobacillus equuli 0.12 17 17 S1 202948 Actinobacillus equuli subsp. haemolyticus 0.01 1 1 S 720 Actinobacillus lignieresii 0.01 1 0 S 67854 Actinobacillus succinogenes 0.01 1 1 S1 339671 Actinobacillus succinogenes 130Z 0.02 3 0 G 2899790 Mergibacter 0.02 3 3 S 221402 Mergibacter septicus 0.02 3 0 G 75984 Mannheimia 0.01 2 2 S 85404 Mannheimia varigena 0.01 1 1 S 75985 Mannheimia haemolytica 0.01 1 0 G 155493 Gallibacterium 0.01 1 1 S 750 Gallibacterium anatis 0.01 1 0 G 214906 Histophilus 0.01 1 1 S 731 Histophilus somni 0.01 1 0 G 745 Pasteurella 0.01 1 1 S 747 Pasteurella multocida 0.55 75 0 O 135614 Lysobacterales 0.55 75 1 F 32033 Lysobacteraceae 0.51 70 0 G 338 Xanthomonas 0.51 70 70 S 29447 Xanthomonas albilineans 0.02 3 2 G 83618 Pseudoxanthomonas 0.01 1 0 G1 2645906 unclassified Pseudoxanthomonas 0.01 1 1 S 2969308 Pseudoxanthomonas sp. JBR18 0.01 1 0 G 68 Lysobacter 0.01 1 0 G1 2635362 unclassified Lysobacter 0.01 1 1 S 2762611 Lysobacter sp. CW239 0.19 26 0 O 72274 Pseudomonadales 0.18 25 0 F 135621 Pseudomonadaceae 0.17 23 10 G 286 Pseudomonas 0.03 4 1 G1 196821 unclassified Pseudomonas 0.01 1 1 S 2954080 Pseudomonas sp. FP1762 0.01 1 1 S 2931382 Pseudomonas sp. PIA16 0.01 1 1 S 2025658 Pseudomonas sp. NS1(2017) 0.03 4 0 G1 136841 Pseudomonas aeruginosa group 0.03 4 4 S 287 Pseudomonas aeruginosa 0.02 3 0 G1 136845 Pseudomonas putida group 0.01 2 2 S 78327 Pseudomonas mosselii 0.01 1 1 S 303 Pseudomonas putida 0.01 2 0 G1 136843 Pseudomonas fluorescens group 0.01 1 1 S 200452 Pseudomonas congelans 0.01 1 0 S 47883 Pseudomonas synxantha 0.01 1 1 S1 96901 Pseudomonas synxantha BG33R 0.01 2 0 G 1654787 Thiopseudomonas 0.01 2 2 S 1697053 Thiopseudomonas alkaliphila 0.01 1 0 F 2887365 Marinobacteraceae 0.01 1 1 G 2742 Marinobacter 0.15 21 0 O 135624 Aeromonadales 0.13 18 3 F 84642 Aeromonadaceae 0.07 10 0 G 642 Aeromonas 0.04 5 5 S 654 Aeromonas veronii 0.03 4 4 S 652 Aeromonas schubertii 0.01 1 1 S 648 Aeromonas caviae 0.02 3 0 G 225143 Oceanisphaera 0.02 3 3 S 1903694 Oceanisphaera avium 0.01 2 1 G 43947 Tolumonas 0.01 1 0 G1 263764 environmental samples 0.01 1 1 S 263765 uncultured Tolumonas sp. 0.02 3 0 F 83763 Succinivibrionaceae 0.02 3 0 G 83770 Succinivibrio 0.02 3 3 S 83771 Succinivibrio dextrinosolvens 0.15 20 0 O 135622 Alteromonadales 0.06 8 0 F 72275 Alteromonadaceae 0.04 5 0 F1 2903219 Alteromonas/Salinimonas group 0.04 5 0 G 226 Alteromonas 0.04 5 0 G1 2614992 unclassified Alteromonas 0.04 5 5 S 2267264 Alteromonas sp. RKMC-009 0.02 3 3 G 261825 Agarivorans 0.06 8 0 F 267888 Pseudoalteromonadaceae 0.04 6 0 G 2834759 Flocculibacter 0.04 6 6 S 2744479 Flocculibacter collagenilyticus 0.01 2 0 G 53246 Pseudoalteromonas 0.01 2 0 G1 194690 unclassified Pseudoalteromonas 0.01 2 2 S 649161 Pseudoalteromonas sp. 3J6 0.03 4 1 F 267890 Shewanellaceae 0.02 3 1 G 22 Shewanella 0.01 2 2 S 712036 Shewanella dokdonensis 0.14 19 0 O 2887326 Moraxellales 0.14 19 0 F 468 Moraxellaceae 0.10 14 6 G 469 Acinetobacter 0.06 8 0 G1 909768 Acinetobacter calcoaceticus/baumannii complex 0.04 6 6 S 470 Acinetobacter baumannii 0.01 2 1 S 48296 Acinetobacter pittii 0.01 1 1 S1 871585 Acinetobacter pittii PHEA-2 0.03 4 2 G 475 Moraxella 0.01 1 1 S 90241 Moraxella lincolnii 0.01 1 1 S 2904120 Moraxella nasibovis 0.01 1 0 G 497 Psychrobacter 0.01 1 1 G1 196806 unclassified Psychrobacter 0.09 12 0 O 135623 Vibrionales 0.09 12 0 F 641 Vibrionaceae 0.06 8 0 G 662 Vibrio 0.03 4 4 S 666 Vibrio cholerae 0.03 4 0 S 52443 Vibrio tapetis 0.03 4 4 S1 1671868 Vibrio tapetis subsp. tapetis 0.03 4 0 G 657 Photobacterium 0.01 2 0 S 38293 Photobacterium damselae 0.01 1 1 S1 38294 Photobacterium damselae subsp. piscicida 0.01 1 1 S1 85581 Photobacterium damselae subsp. damselae 0.01 2 2 S 553611 Photobacterium leiognathi 0.05 7 0 O 135613 Chromatiales 0.05 7 0 F 1046 Chromatiaceae 0.01 2 0 G 85072 Allochromatium 0.01 2 2 S 553982 Allochromatium tepidum 0.01 1 1 G 1056 Thiocapsa 0.01 1 1 G 61593 Thiorhodovibrio 0.01 1 1 G 67575 Rheinheimera 0.01 1 0 G 156885 Thioflavicoccus 0.01 1 0 S 80679 Thioflavicoccus mobilis 0.01 1 1 S1 765912 Thioflavicoccus mobilis 8321 0.01 1 0 G 2828366 Caldichromatium 0.01 1 1 S 2699430 Caldichromatium japonicum 0.04 5 0 O 72273 Thiotrichales 0.01 2 0 F 135616 Piscirickettsiaceae 0.01 1 1 G 40222 Methylophaga 0.01 1 0 G 2781121 Thiosulfatimonas 0.01 1 1 S 2675054 Thiosulfatimonas sediminis 0.01 1 1 F 34064 Francisellaceae 0.01 1 0 F 135617 Thiotrichaceae 0.01 1 1 G 1030 Thiothrix 0.01 1 0 F 2056687 Fastidiosibacteraceae 0.01 1 0 G 2056696 Cysteiniphilum 0.01 1 0 G1 2610889 unclassified Cysteiniphilum 0.01 1 1 S 2975055 Cysteiniphilum sp. QT6929 0.01 2 0 O 135618 Methylococcales 0.01 1 0 F 403 Methylococcaceae 0.01 1 0 G 1295378 Methylogaea 0.01 1 1 S 1295382 Methylogaea oryzae 0.01 1 0 F 1486721 Methylothermaceae 0.01 1 1 G 1486720 Methylomarinovum 0.01 2 0 C1 118884 Gammaproteobacteria incertae sedis 0.01 1 0 G 198346 Candidatus Palibaumannia 0.01 1 1 S 186490 Candidatus Palibaumannia cicadellinicola 0.01 1 0 G 1076625 Candidatus Steffania 0.01 1 1 S 1076626 Candidatus Steffania adelgidicola 0.01 1 0 O 135615 Cardiobacteriales 0.01 1 0 F 868 Cardiobacteriaceae 0.01 1 0 G 2717 Cardiobacterium 0.01 1 1 S 2718 Cardiobacterium hominis 0.01 1 0 O 135619 Oceanospirillales 0.01 1 0 F 28256 Halomonadaceae 0.01 1 1 F1 114403 Zymobacter group 0.01 1 0 O 1240482 Orbales 0.01 1 0 F 1240483 Orbaceae 0.01 1 0 G 2894762 Zophobihabitans 0.01 1 1 S 1635327 Zophobihabitans entericus 0.01 1 0 O 1706369 Cellvibrionales 0.01 1 0 F 1706371 Cellvibrionaceae 0.01 1 0 G 1792291 Marinagarivorans 0.01 1 1 S 2721545 Marinagarivorans cellulosilyticus 0.01 1 0 O 2975284 Candidatus Comchoanobacterales 0.01 1 0 F 2975285 Candidatus Comchoanobacteraceae 0.01 1 0 G 2975286 Candidatus Comchoanobacter 0.01 1 1 S 2919598 Candidatus Comchoanobacter bicostacola 0.01 1 0 C1 33811 unclassified Gammaproteobacteria 0.01 1 0 S 883811 Isorropodon fossajaponicum symbiont 0.01 1 1 S1 1235284 Isorropodon fossajaponicum endosymbiont JTNG4 1.28 175 8 C 28216 Betaproteobacteria 1.00 136 13 O 80840 Burkholderiales 0.53 72 28 F 75682 Oxalobacteraceae 0.15 21 18 G 29580 Janthinobacterium 0.02 3 0 G1 2610881 unclassified Janthinobacterium 0.01 2 2 S 3065910 Janthinobacterium sp. J1-1 0.01 1 1 S 1938606 Janthinobacterium sp. LM6 0.12 16 6 F1 2895353 Telluria group 0.06 8 3 G 149698 Massilia 0.03 4 0 G1 2609279 unclassified Massilia 0.02 3 3 S 1707785 Massilia sp. WG5 0.01 1 1 S 3126507 Massilia sp. W12 0.01 1 1 S 457921 Massilia varians 0.01 1 0 G 212744 Rugamonas 0.01 1 0 G1 2620350 unclassified Rugamonas 0.01 1 1 S 3039386 Rugamonas sp. DEMB1 0.01 1 0 G 1522432 Pseudoduganella 0.01 1 0 G1 2637179 unclassified Pseudoduganella 0.01 1 1 S 2995154 Pseudoduganella sp. SL102 0.03 4 1 G 401469 Undibacterium 0.02 3 1 G1 2630295 unclassified Undibacterium 0.01 2 2 S 3048609 Undibacterium sp. CCC3.4 0.01 1 1 G 963 Herbaspirillum 0.01 1 0 G 884214 Candidatus Zinderia 0.01 1 0 G1 3077950 unclassified Candidatus Zinderia 0.01 1 1 S 3077951 Candidatus Zinderia endosymbiont of Aphrophora alni 0.01 1 0 G 1344552 Noviherbaspirillum 0.01 1 0 G1 2617509 unclassified Noviherbaspirillum 0.01 1 1 S 2601898 Noviherbaspirillum sp. UKPF54 0.25 34 1 F 119060 Burkholderiaceae 0.08 11 0 G 47670 Lautropia 0.08 11 11 S 47671 Lautropia mirabilis 0.07 9 0 G 32008 Burkholderia 0.04 5 0 G1 87882 Burkholderia cepacia complex 0.02 3 0 S 152500 Burkholderia dolosa 0.02 3 3 S1 1385930 Burkholderia dolosa PC543 0.01 1 1 S 1503055 Burkholderia territorii 0.01 1 1 S 152480 Burkholderia ambifaria 0.03 4 0 G1 111527 pseudomallei group 0.01 2 2 S 13373 Burkholderia mallei 0.01 2 2 S 28450 Burkholderia pseudomallei 0.04 6 2 G 48736 Ralstonia 0.03 4 0 G1 3116862 Ralstonia solanacearum species complex 0.03 4 4 S 305 Ralstonia solanacearum 0.02 3 0 G 106589 Cupriavidus 0.02 3 3 S 164546 Cupriavidus taiwanensis 0.02 3 0 G 2038280 Robbsia 0.01 2 0 G1 2636574 unclassified Robbsia 0.01 2 2 S 3149231 Robbsia sp. KACC 23696 0.01 1 1 S 28092 Robbsia andropogonis 0.01 1 0 G 44013 Polynucleobacter 0.01 1 1 S 576610 Polynucleobacter necessarius 0.09 12 4 F 80864 Comamonadaceae 0.02 3 0 G 283 Comamonas 0.01 2 2 S 2743470 Comamonas antarctica 0.01 1 1 S 2949090 Comamonas endophytica 0.01 2 2 G 34072 Variovorax 0.01 2 2 G 80865 Delftia 0.01 1 0 G 665874 Limnohabitans 0.01 1 0 G1 2626134 unclassified Limnohabitans 0.01 1 1 S 1678129 Limnohabitans sp. 103DPR2 0.04 5 0 F 506 Alcaligenaceae 0.01 2 0 G 1472344 Basilea 0.01 2 0 S 1472345 Basilea psittacipulmonis 0.01 2 2 S1 1072685 Basilea psittacipulmonis DSM 24701 0.01 1 0 G 359336 Castellaniella 0.01 1 0 S 75697 Castellaniella defragrans 0.01 1 1 S1 1437824 Castellaniella defragrans 65Phen 0.01 1 0 G 290425 Advenella 0.01 1 1 S 1481665 Advenella alkanexedens 0.01 1 0 G 305976 Pusillimonas 0.01 1 0 G1 2640016 unclassified Pusillimonas 0.01 1 1 S 2716226 Pusillimonas sp. DMV24BSW_D 0.18 24 0 O 206351 Neisseriales 0.18 24 9 F 481 Neisseriaceae 0.07 9 4 G 482 Neisseria 0.02 3 3 S 487 Neisseria meningitidis 0.01 1 1 S 486 Neisseria lactamica 0.01 1 0 G1 2623750 unclassified Neisseria 0.01 1 1 S 655307 Neisseria sp. KEM232 0.03 4 0 G 2593687 Aquella 0.03 4 4 S 2067065 Aquella oligotrophica 0.01 1 0 G 299568 Uruburuella 0.01 1 1 S 252130 Uruburuella suis 0.01 1 1 G 1193515 Snodgrassella 0.04 6 1 O 32003 Nitrosomonadales 0.02 3 1 F 206379 Nitrosomonadaceae 0.01 2 1 G 914 Nitrosomonas 0.01 1 1 S 44577 Nitrosomonas ureae 0.01 1 0 F 90627 Gallionellaceae 0.01 1 0 G 2249462 Ferrigenium 0.01 1 1 S 1682490 Ferrigenium kumadai 0.01 1 0 F 2772226 Sulfuricellaceae 0.01 1 0 G 1778653 Sulfuriferula 0.01 1 1 S 171865 Sulfuriferula plumbiphila 0.01 1 0 O 206389 Rhodocyclales 0.01 1 0 F 2008794 Zoogloeaceae 0.01 1 1 G 33057 Thauera 1.04 142 4 C 28211 Alphaproteobacteria 0.34 46 1 O 204441 Rhodospirillales 0.28 38 0 F 2844601 Stellaceae 0.28 38 0 G 93 Stella 0.28 38 38 S 94 Stella humosa 0.03 4 0 F 433 Acetobacteraceae 0.01 1 0 G 3027666 Aristophania 0.01 1 1 S 2697033 Aristophania vespae 0.01 1 0 G 2870717 Pseudoroseomonas 0.01 1 1 S 204525 Pseudoroseomonas cervicalis 0.01 1 0 G 512381 Acidisoma 0.01 1 0 G1 2634065 unclassified Acidisoma 0.01 1 1 S 3040935 Acidisoma sp. PAMC 29798 0.01 1 0 G 1519186 Nguyenibacter 0.01 1 0 G1 2635836 unclassified Nguyenibacter 0.01 1 1 S 3049350 Nguyenibacter sp. L1 0.01 1 0 F 2690195 Elioraeaceae 0.01 1 0 G 457933 Elioraea 0.01 1 1 S 2843330 Elioraea tepida 0.01 1 0 F 2844864 Thalassobaculaceae 0.01 1 0 G 390876 Nisaea 0.01 1 1 S 1862145 Nisaea acidiphila 0.01 1 0 F 2844866 Thalassospiraceae 0.01 1 0 G 1182780 Magnetospira 0.01 1 0 G1 2685734 unclassified Magnetospira 0.01 1 1 S 1288970 Magnetospira sp. QH-2 0.29 39 2 O 204457 Sphingomonadales 0.26 36 4 F 41297 Sphingomonadaceae 0.18 25 8 G 165696 Novosphingobium 0.12 16 16 S 13688 Novosphingobium capsulatum 0.01 1 1 G1 2644732 unclassified Novosphingobium 0.04 5 3 G 13687 Sphingomonas 0.01 1 1 S 1609977 Sphingomonas hengshuiensis 0.01 1 0 G1 196159 unclassified Sphingomonas 0.01 1 1 S 2898433 Sphingomonas sp. J315 0.01 1 1 G 165695 Sphingobium 0.01 1 1 G 165697 Sphingopyxis 0.01 1 0 F 335929 Erythrobacteraceae 0.01 1 1 G 1855416 Qipengyuania 0.19 26 1 O 356 Hyphomicrobiales 0.12 16 7 F 119045 Methylobacteriaceae 0.06 8 6 G 407 Methylobacterium 0.01 1 0 S 31998 Methylobacterium radiotolerans 0.01 1 1 S1 426355 Methylobacterium radiotolerans JCM 2831 0.01 1 1 S 270351 Methylobacterium aquaticum 0.01 1 1 G 186650 Microvirga 0.01 2 0 F 41294 Nitrobacteraceae 0.01 2 0 G 374 Bradyrhizobium 0.01 2 0 G1 2631580 unclassified Bradyrhizobium 0.01 2 2 S 1325111 Bradyrhizobium sp. CCBAU 53338 0.01 2 0 F 118882 Brucellaceae 0.01 2 2 F1 2826938 Brucella/Ochrobactrum group 0.01 1 0 F 45404 Beijerinckiaceae 0.01 1 0 G 1156568 Methylovirgula 0.01 1 0 G1 2640612 unclassified Methylovirgula 0.01 1 1 S 2293567 Methylovirgula sp. 4M-Z18 0.01 1 0 F 69277 Phyllobacteriaceae 0.01 1 0 G 68287 Mesorhizobium 0.01 1 1 G1 325217 unclassified Mesorhizobium 0.01 1 0 F 82115 Rhizobiaceae 0.01 1 0 F1 227290 Rhizobium/Agrobacterium group 0.01 1 0 G 1612611 Pararhizobium 0.01 1 1 G1 2643050 unclassified Pararhizobium 0.01 1 0 F 335928 Xanthobacteraceae 0.01 1 0 G 556257 Pseudolabrys 0.01 1 1 S 331696 Pseudolabrys taiwanensis 0.01 1 0 F 2843308 Pleomorphomonadaceae 0.01 1 0 G 261933 Pleomorphomonas 0.01 1 0 G1 442120 environmental samples 0.01 1 1 S 442121 uncultured Pleomorphomonas sp. 0.10 14 0 O 204458 Caulobacterales 0.10 14 0 F 76892 Caulobacteraceae 0.07 9 1 G 41275 Brevundimonas 0.06 8 0 G1 2622653 unclassified Brevundimonas 0.06 8 8 S 2560058 Brevundimonas sp. Bb-A 0.02 3 0 G 75 Caulobacter 0.02 3 0 G1 2648921 unclassified Caulobacter 0.02 3 3 S 3016000 Caulobacter sp. NIBR1757 0.01 2 1 G 20 Phenylobacterium 0.01 1 0 G1 2640670 unclassified Phenylobacterium 0.01 1 1 S 2903901 Phenylobacterium sp. LH3H17 0.04 6 2 O 204455 Rhodobacterales 0.01 2 0 F 31989 Paracoccaceae 0.01 1 0 G 265 Paracoccus 0.01 1 1 S 82367 Paracoccus pantotrophus 0.01 1 0 G 2683599 Paroceanicella 0.01 1 1 S 2579971 Paroceanicella profunda 0.01 2 0 F 2854170 Roseobacteraceae 0.01 2 0 G 60136 Sulfitobacter 0.01 2 2 S 83219 Sulfitobacter mediterraneus 0.02 3 0 O 1921002 Holosporales 0.01 2 0 F 44746 Holosporaceae 0.01 2 0 G 2654634 Candidatus Hydrogenosomobacter 0.01 2 2 S 2558174 Candidatus Hydrogenosomobacter endosymbioticus 0.01 1 0 F 2100208 Caedimonadaceae 0.01 1 0 G 1509243 Candidatus Nucleicultrix 0.01 1 0 S 1509244 Candidatus Nucleicultrix amoebiphila 0.01 1 1 S1 1414854 Candidatus Nucleicultrix amoebiphila FS5 0.01 2 1 O 766 Rickettsiales 0.01 1 1 F 775 Rickettsiaceae 0.01 1 0 O 362534 Kordiimonadales 0.01 1 0 F 1549128 Temperatibacteraceae 0.01 1 0 G 1549129 Temperatibacter 0.01 1 1 S 1456591 Temperatibacter marinus 0.01 1 0 O 2800060 Hyphomonadales 0.01 1 0 F 69657 Hyphomonadaceae 0.01 1 1 G 85 Hyphomonas 0.01 1 0 C 580370 Zetaproteobacteria 0.01 1 0 O 580371 Mariprofundales 0.01 1 0 F 580372 Mariprofundaceae 0.01 1 1 G 377315 Mariprofundus 6.45 879 13 D1 1783272 Terrabacteria group 4.33 591 8 P 1239 Bacillota 3.85 525 10 C 91061 Bacilli 3.26 445 7 O 186826 Lactobacillales 2.32 317 1 F 1300 Streptococcaceae 2.32 316 174 G 1301 Streptococcus 0.45 61 54 S 1308 Streptococcus thermophilus 0.04 6 6 S1 767463 Streptococcus thermophilus ND03 0.01 1 1 S1 322159 Streptococcus thermophilus LMD-9 0.10 14 0 G1 671232 Streptococcus anginosus group 0.10 14 14 S 1328 Streptococcus anginosus 0.09 12 12 S 1314 Streptococcus pyogenes 0.07 10 5 S 1311 Streptococcus agalactiae 0.04 5 5 S1 1203670 Streptococcus agalactiae GD201008-001 0.07 10 5 S 1313 Streptococcus pneumoniae 0.01 2 2 S1 1159083 Streptococcus pneumoniae PCS8235 0.01 2 2 S1 869311 Streptococcus pneumoniae SPN032672 0.01 1 1 S1 516950 Streptococcus pneumoniae CGSP14 0.04 5 5 S 68892 Streptococcus infantis 0.03 4 4 S 2490633 Streptococcus periodonticum 0.02 3 3 S 2021971 Streptococcus respiraculi 0.02 3 3 S 1345 Streptococcus ferus 0.02 3 3 S 1341 Streptococcus ratti 0.02 3 2 G1 2608887 unclassified Streptococcus 0.01 1 1 S 2664091 Streptococcus sp. zg-86 0.01 2 2 S 82348 Streptococcus pluranimalium 0.01 2 2 S 1346 Streptococcus iniae 0.01 1 1 S 1335 Streptococcus equinus 0.01 1 1 S 1501662 Streptococcus parasuis 0.01 1 1 S 1811193 Streptococcus pantholopis 0.01 1 0 G1 119603 Streptococcus dysgalactiae group 0.01 1 0 S 1334 Streptococcus dysgalactiae 0.01 1 1 S1 99822 Streptococcus dysgalactiae subsp. dysgalactiae 0.01 1 1 S 1304 Streptococcus salivarius 0.01 1 1 S 1111760 Streptococcus troglodytae 0.01 1 1 S 2781599 Streptococcus oriscaviae 0.01 1 1 S 1309 Streptococcus mutans 0.01 1 1 S 1310 Streptococcus sobrinus 0.01 1 1 S 1326 Streptococcus acidominimus 0.51 70 0 F 81852 Enterococcaceae 0.50 68 0 G 1350 Enterococcus 0.48 65 65 S 1351 Enterococcus faecalis 0.01 1 1 S 1352 Enterococcus faecium 0.01 1 1 S 1353 Enterococcus gallinarum 0.01 1 1 S 1354 Enterococcus hirae 0.01 2 0 G 51668 Tetragenococcus 0.01 2 2 S 526944 Tetragenococcus osmophilus 0.22 30 3 F 33958 Lactobacillaceae 0.10 14 5 G 1578 Lactobacillus 0.01 2 0 S 1584 Lactobacillus delbrueckii 0.01 2 0 S1 1585 Lactobacillus delbrueckii subsp. bulgaricus 0.01 2 2 S2 321956 Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 0.01 2 2 S 33959 Lactobacillus johnsonii 0.01 2 2 S 47770 Lactobacillus crispatus 0.01 2 2 S 147802 Lactobacillus iners 0.01 1 1 G1 2620435 unclassified Lactobacillus 0.01 2 0 G 2767887 Ligilactobacillus 0.01 2 2 S 1605 Ligilactobacillus animalis 0.01 2 2 G 46255 Weissella 0.01 2 0 G 2759736 Lacticaseibacillus 0.01 2 2 S 1597 Lacticaseibacillus paracasei 0.01 1 0 G 2767874 Acetilactobacillus 0.01 1 1 S 1720083 Acetilactobacillus jinshanensis 0.01 1 1 G 2767889 Loigolactobacillus 0.01 1 1 G 2767881 Fructilactobacillus 0.01 1 1 G 2767890 Paucilactobacillus 0.01 1 1 G 2767877 Apilactobacillus 0.01 1 0 G 2767842 Lactiplantibacillus 0.01 1 1 S 1590 Lactiplantibacillus plantarum 0.01 1 0 G 2930384 Periweissella 0.01 1 1 S 2506420 Periweissella cryptocerci 0.11 15 0 F 186828 Carnobacteriaceae 0.10 14 0 G 117563 Granulicatella 0.10 13 13 S 46124 Granulicatella adiacens 0.01 1 1 S 137732 Granulicatella elegans 0.01 1 0 G 82800 Desemzia 0.01 1 1 S 82801 Desemzia incerta 0.04 6 0 F 186827 Aerococcaceae 0.02 3 0 G 2862144 Ruoffia 0.02 3 3 S 87458 Ruoffia tabacinasalis 0.01 2 0 G 46123 Abiotrophia 0.01 2 2 S 46125 Abiotrophia defectiva 0.01 1 1 G 1375 Aerococcus 0.51 70 4 O 1385 Bacillales 0.27 37 1 F 186817 Bacillaceae 0.11 15 2 G 1386 Bacillus 0.07 9 0 G1 653685 Bacillus subtilis group 0.05 7 0 G2 1938374 Bacillus amyloliquefaciens group 0.05 7 7 S 492670 Bacillus velezensis 0.01 2 2 S 1423 Bacillus subtilis 0.01 2 0 G1 185979 unclassified Bacillus (in: firmicutes) 0.01 1 1 S 2874284 Bacillus sp. CRB-7 0.01 1 1 S 2841656 Bacillus sp. ZHX3 0.01 1 0 G1 86661 Bacillus cereus group 0.01 1 0 S 1428 Bacillus thuringiensis 0.01 1 1 S1 1257079 Bacillus thuringiensis DAR 81934 0.01 1 0 G1 1792192 Bacillus altitudinis complex 0.01 1 1 S 293387 Bacillus altitudinis 0.07 9 0 G 84406 Virgibacillus 0.07 9 9 S 447199 Virgibacillus salarius 0.04 6 0 G 2837504 Heyndrickxia 0.04 6 6 S 1398 Heyndrickxia coagulans 0.01 2 0 G 175304 Lentibacillus 0.01 2 2 S 1472767 Lentibacillus amyloliquefaciens 0.01 1 1 G 1055323 Aeribacillus 0.01 1 0 G 2005375 Alkalicoccus 0.01 1 1 S 1667239 Alkalicoccus halolimnae 0.01 1 1 G 2893057 Shouchella 0.01 1 0 G 351195 Salimicrobium 0.01 1 0 G1 2619739 unclassified Salimicrobium 0.01 1 1 S 3095364 Salimicrobium sp. PL1-032A 0.11 15 1 F 90964 Staphylococcaceae 0.10 14 0 G 1279 Staphylococcus 0.07 9 9 S 1280 Staphylococcus aureus 0.01 1 1 S 1283 Staphylococcus haemolyticus 0.01 1 1 S 2044912 Staphylococcus debuckii 0.01 1 1 S 246432 Staphylococcus equorum 0.01 1 1 S 28035 Staphylococcus lugdunensis 0.01 1 1 S 29382 Staphylococcus cohnii 0.03 4 0 F 539738 Gemellaceae 0.03 4 4 G 1378 Gemella 0.02 3 0 O1 539002 Bacillales incertae sedis 0.01 2 0 O2 539742 Bacillales Family XII. Incertae Sedis 0.01 2 2 G 33986 Exiguobacterium 0.01 1 0 F 539003 Bacillales Family X. Incertae Sedis 0.01 1 0 G 1609627 Hydrogenibacillus 0.01 1 0 G1 2773237 unclassified Hydrogenibacillus 0.01 1 1 S 2866627 Hydrogenibacillus sp. N12 0.01 2 0 F 186821 Sporolactobacillaceae 0.01 2 2 G 2077 Sporolactobacillus 0.01 2 0 F 186823 Alicyclobacillaceae 0.01 2 0 G 29330 Alicyclobacillus 0.01 2 2 S 2931921 Alicyclobacillus mengziensis 0.01 1 0 F 186818 Planococcaceae 0.01 1 0 G 1569 Sporosarcina 0.01 1 0 G1 2647733 unclassified Sporosarcina 0.01 1 1 S 1930546 Sporosarcina sp. P37 0.01 1 0 F 186820 Listeriaceae 0.01 1 0 G 1637 Listeria 0.01 1 0 S 1638 Listeria ivanovii 0.01 1 0 S1 202751 Listeria ivanovii subsp. ivanovii 0.01 1 1 S2 881621 Listeria ivanovii subsp. ivanovii PAM 55 0.01 1 0 F 186822 Paenibacillaceae 0.01 1 0 G 44249 Paenibacillus 0.01 1 0 G1 185978 unclassified Paenibacillus 0.01 1 1 S 715179 Paenibacillus sp. sptzw28 0.23 32 1 C 186801 Clostridia 0.13 18 0 O 186802 Eubacteriales 0.07 10 0 F 216572 Oscillospiraceae 0.04 6 0 G 1263 Ruminococcus 0.02 3 3 S 1161942 Ruminococcus champanellensis 0.02 3 3 S 2564099 Ruminococcus bovis 0.01 1 1 G 216851 Faecalibacterium 0.01 1 1 G 2892396 Vescimonas 0.01 1 0 G 2842531 Solibaculum 0.01 1 1 S 2780922 Solibaculum mannosilyticum 0.01 1 0 G 459786 Oscillibacter 0.01 1 1 S 2763056 Oscillibacter hominis 0.03 4 0 F 31979 Clostridiaceae 0.03 4 2 G 1485 Clostridium 0.01 2 2 S 1502 Clostridium perfringens 0.01 2 2 F 31984 Heliobacteriaceae 0.01 2 0 F 186807 Peptococcaceae 0.01 1 0 G 2282742 Desulfofarcimen 0.01 1 0 S 58138 Desulfofarcimen acetoxidans 0.01 1 1 S1 485916 Desulfofarcimen acetoxidans DSM 771 0.01 1 0 G 2924872 Acididesulfobacillus 0.01 1 1 S 1561005 Acididesulfobacillus acetoxydans 0.05 7 0 O 3085636 Lachnospirales 0.05 7 0 F 186803 Lachnospiraceae 0.01 2 0 G 28050 Lachnospira 0.01 2 2 S 39485 Lachnospira eligens 0.01 1 0 G 841 Roseburia 0.01 1 1 S 166486 Roseburia intestinalis 0.01 1 0 G 33042 Coprococcus 0.01 1 1 S 116085 Coprococcus catus 0.01 1 0 G 2569097 Anaerobutyricum 0.01 1 1 S 39488 Anaerobutyricum hallii 0.01 1 0 G 3031933 Chordicoccus 0.01 1 1 S 2709410 Chordicoccus furentiruminis 0.01 1 0 G 1506577 Tyzzerella 0.01 1 1 S 36835 [Clostridium] colinum 0.02 3 0 O 53433 Halanaerobiales 0.02 3 0 F 53434 Halobacteroidaceae 0.02 3 0 G 42417 Halobacteroides 0.02 3 0 S 42422 Halobacteroides halobius 0.02 3 3 S1 748449 Halobacteroides halobius DSM 5150 0.02 3 0 O 3082720 Peptostreptococcales 0.02 3 1 F 186804 Peptostreptococcaceae 0.01 1 0 G 1257 Peptostreptococcus 0.01 1 1 S 3003601 Peptostreptococcus equinus 0.01 1 0 G 1870884 Clostridioides 0.01 1 1 S 1496 Clostridioides difficile 0.10 14 0 C 909932 Negativicutes 0.10 14 0 O 1843489 Veillonellales 0.10 14 1 F 31977 Veillonellaceae 0.07 9 4 G 29465 Veillonella 0.03 4 4 S 29466 Veillonella parvula 0.01 1 1 S 423477 Veillonella rogosae 0.02 3 0 G 906 Megasphaera 0.02 3 3 S 907 Megasphaera elsdenii 0.01 1 0 G 39948 Dialister 0.01 1 1 S 39950 Dialister pneumosintes 0.06 8 0 C 1737404 Tissierellia 0.06 8 0 O 1737405 Tissierellales 0.06 8 0 F 1570339 Peptoniphilaceae 0.04 6 2 G 165779 Anaerococcus 0.01 2 0 S 33034 Anaerococcus prevotii 0.01 2 2 S1 525919 Anaerococcus prevotii DSM 20548 0.01 1 1 S 1755241 Anaerococcus nagyae 0.01 1 0 G1 2614126 unclassified Anaerococcus 0.01 1 1 S 3036300 Anaerococcus sp. Marseille-Q7828 0.01 2 0 G 150022 Finegoldia 0.01 2 2 S 1260 Finegoldia magna 0.02 3 0 C 526524 Erysipelotrichia 0.02 3 0 O 526525 Erysipelotrichales 0.02 3 0 F 2810280 Coprobacillaceae 0.02 3 3 G 135858 Catenibacterium 0.01 1 0 C 1676648 Limnochordia 0.01 1 0 O 1676649 Limnochordales 0.01 1 0 F 1676650 Limnochordaceae 0.01 1 0 G 1676651 Limnochorda 0.01 1 1 S 1555112 Limnochorda pilosa 1.72 235 1 P 201174 Actinomycetota 1.69 231 15 C 1760 Actinomycetes 0.59 80 7 O 85006 Micrococcales 0.40 55 2 F 1268 Micrococcaceae 0.37 50 10 G 32207 Rothia 0.16 22 22 S 2047 Rothia dentocariosa 0.07 9 9 S 43675 Rothia mucilaginosa 0.07 9 9 S 172042 Rothia aeria 0.01 1 1 G 57493 Kocuria 0.01 1 0 G 1742993 Pseudarthrobacter 0.01 1 0 G1 2647000 unclassified Pseudarthrobacter 0.01 1 1 S 2973976 Pseudarthrobacter sp. NS4 0.01 1 0 G 1742989 Glutamicibacter 0.01 1 1 S 37929 Glutamicibacter nicotianae 0.04 5 2 F 85023 Microbacteriaceae 0.01 1 0 G 33877 Agromyces 0.01 1 0 G1 2639701 unclassified Agromyces 0.01 1 1 S 3156399 Agromyces sp. G08B096 0.01 1 0 G 33882 Microbacterium 0.01 1 1 S 3028316 Microbacterium horticulturae 0.01 1 0 G 1433997 Diaminobutyricimonas 0.01 1 0 G1 2643261 unclassified Diaminobutyricimonas 0.01 1 1 S 2683590 Diaminobutyricimonas sp. LJ205 0.03 4 0 F 85019 Brevibacteriaceae 0.03 4 1 G 1696 Brevibacterium 0.02 3 0 G1 2614124 unclassified Brevibacterium 0.01 2 2 S 2777556 Brevibacterium sp. SMBL_HHYL_HB1 0.01 1 1 S 2999062 Brevibacterium sp. BRM-1 0.03 4 0 F 85020 Dermabacteraceae 0.01 2 2 G 36739 Dermabacter 0.01 2 0 G 43668 Brachybacterium 0.01 2 0 G1 2623841 unclassified Brachybacterium 0.01 2 2 S 3069708 Brachybacterium sp. GU-2 0.02 3 0 F 2805591 Tropherymataceae 0.02 3 0 G 2038 Tropheryma 0.02 3 3 S 2039 Tropheryma whipplei 0.01 1 0 F 85016 Cellulomonadaceae 0.01 1 1 G 1707 Cellulomonas 0.01 1 0 F 2805590 Ornithinimicrobiaceae 0.01 1 0 G 265976 Serinicoccus 0.01 1 0 S 247333 Serinicoccus marinus 0.01 1 1 S1 1123251 Serinicoccus marinus DSM 15273 0.44 60 3 O 85009 Propionibacteriales 0.32 44 8 F 31957 Propionibacteriaceae 0.23 32 3 G 1912216 Cutibacterium 0.21 29 29 S 1747 Cutibacterium acnes 0.01 2 0 G 1743 Propionibacterium 0.01 1 1 S 1744 Propionibacterium freudenreichii 0.01 1 1 S 119981 Propionibacterium australiense 0.01 1 1 G 29404 Microlunatus 0.01 1 0 G 1912215 Acidipropionibacterium 0.01 1 1 S 1749 Acidipropionibacterium jensenii 0.10 13 0 F 85015 Nocardioidaceae 0.08 11 0 G 3024237 Solicola 0.08 11 11 S 2908642 Solicola gregarius 0.01 2 2 G 1839 Nocardioides 0.31 42 1 O 85007 Mycobacteriales 0.26 35 0 F 1653 Corynebacteriaceae 0.26 35 21 G 1716 Corynebacterium 0.03 4 0 G1 2624378 unclassified Corynebacterium 0.02 3 3 S 1487956 Corynebacterium sp. ATCC 6931 0.01 1 1 S 2599641 Corynebacterium sp. sy039 0.01 2 0 S 441501 Corynebacterium massiliense 0.01 2 2 S1 1121364 Corynebacterium massiliense DSM 45435 0.01 1 1 S 1718 Corynebacterium glutamicum 0.01 1 1 S 1719 Corynebacterium pseudotuberculosis 0.01 1 1 S 161895 Corynebacterium phocae 0.01 1 1 S 53374 Corynebacterium coyleae 0.01 1 1 S 108486 Corynebacterium falsenii 0.01 1 0 S 203263 Corynebacterium aquilae 0.01 1 1 S1 1431546 Corynebacterium aquilae DSM 44791 0.01 1 1 S 38289 Corynebacterium jeikeium 0.01 1 1 S 187491 Corynebacterium glaucum 0.01 2 0 F 85025 Nocardiaceae 0.01 1 1 G 1817 Nocardia 0.01 1 1 G 1827 Rhodococcus 0.01 2 0 F 2805586 Lawsonellaceae 0.01 2 0 G 1847725 Lawsonella 0.01 2 2 S 1528099 Lawsonella clevelandensis 0.01 1 1 F 1762 Mycobacteriaceae 0.01 1 0 F 85026 Gordoniaceae 0.01 1 0 G 2053 Gordonia 0.01 1 1 S 84595 Gordonia polyisoprenivorans 0.15 20 0 O 85011 Kitasatosporales 0.15 20 0 F 2062 Streptomycetaceae 0.15 20 1 G 1883 Streptomyces 0.10 14 2 G1 2593676 unclassified Streptomyces 0.05 7 7 S 2099584 Streptomyces sp. ICC4 0.01 2 2 S 2903645 Streptomyces sp. NBC_00310 0.01 1 1 S 3062782 Streptomyces sp. HUAS CX7 0.01 1 1 S 2099583 Streptomyces sp. ICC1 0.01 1 1 S 2594460 Streptomyces sp. S1A1-8 0.01 1 1 S 1690221 Streptomyces spongiicola 0.01 1 1 S 35621 Streptomyces mobaraensis 0.01 1 1 S 1904616 Streptomyces fodineus 0.01 1 1 S 83291 Streptomyces armeniacus 0.01 1 0 G1 2867164 Streptomyces rochei group 0.01 1 1 S 67376 Streptomyces vinaceusdrappus 0.07 9 0 O 2037 Actinomycetales 0.07 9 4 F 2049 Actinomycetaceae 0.02 3 1 G 2529408 Schaalia 0.01 1 1 S 1660 Schaalia odontolytica 0.01 1 1 S 52773 Schaalia meyeri 0.01 1 1 G 1654 Actinomyces 0.01 1 0 G 2692113 Gleimia 0.01 1 1 S 595468 Gleimia hominis 0.01 2 0 O 85004 Bifidobacteriales 0.01 2 0 F 31953 Bifidobacteriaceae 0.01 2 1 G 1678 Bifidobacterium 0.01 1 0 S 216816 Bifidobacterium longum 0.01 1 1 S1 1682 Bifidobacterium longum subsp. infantis 0.01 1 0 O 85010 Pseudonocardiales 0.01 1 0 F 2070 Pseudonocardiaceae 0.01 1 0 G 1847 Pseudonocardia 0.01 1 0 S 240495 Pseudonocardia dioxanivorans 0.01 1 1 S1 675635 Pseudonocardia dioxanivorans CB1190 0.01 1 0 O 85012 Streptosporangiales 0.01 1 0 F 83676 Nocardiopsaceae 0.01 1 0 G 83677 Thermobifida 0.01 1 1 S 2021 Thermobifida fusca 0.01 1 0 O 1643682 Geodermatophilales 0.01 1 0 F 85030 Geodermatophilaceae 0.01 1 0 G 38501 Blastococcus 0.01 1 0 S 138336 Blastococcus saxobsidens 0.01 1 1 S1 1146883 Blastococcus saxobsidens DD2 0.01 1 0 C 84995 Rubrobacteria 0.01 1 0 O 84996 Rubrobacterales 0.01 1 0 F 84997 Rubrobacteraceae 0.01 1 1 G 42255 Rubrobacter 0.01 1 0 C 84998 Coriobacteriia 0.01 1 0 O 1643822 Eggerthellales 0.01 1 0 F 1643826 Eggerthellaceae 0.01 1 0 G 2005386 Arabiibacter 0.01 1 1 S 1870985 Arabiibacter massiliensis 0.01 1 0 C 908620 Nitriliruptoria 0.01 1 0 O 1747768 Egibacterales 0.01 1 0 F 1747769 Egibacteraceae 0.01 1 0 G 1747770 Egibacter 0.01 1 1 S 1670831 Egibacter rhizosphaerae 0.17 23 0 D2 1798711 Cyanobacteriota/Melainabacteria group 0.17 23 0 P 1117 Cyanobacteriota 0.17 23 4 C 3028117 Cyanophyceae 0.10 14 0 C1 1301283 Oscillatoriophycideae 0.09 12 0 O 1150 Oscillatoriales 0.07 10 0 F 2934961 Sirenicapillariaceae 0.07 10 0 G 2596745 Limnospira 0.07 10 0 S 147322 Limnospira indica 0.07 10 10 S1 2760438 Limnospira indica BM01 0.01 2 0 F 1892254 Oscillatoriaceae 0.01 1 0 G 1158 Oscillatoria 0.01 1 0 S 118323 Oscillatoria acuminata 0.01 1 1 S1 56110 Oscillatoria acuminata PCC 6304 0.01 1 0 G 1198 Phormidium 0.01 1 0 S 2974039 Phormidium yuhuli 0.01 1 1 S1 2940671 Phormidium yuhuli AB48 0.01 2 0 O 1118 Chroococcales 0.01 2 0 F 1890449 Microcystaceae 0.01 2 0 G 1125 Microcystis 0.01 2 0 G1 2643300 unclassified Microcystis 0.01 2 2 S 1967666 Microcystis sp. MC19 0.01 2 1 O 1161 Nostocales 0.01 1 0 F 1162 Nostocaceae 0.01 1 0 G 1177 Nostoc 0.01 1 0 G1 2593658 unclassified Nostoc 0.01 1 0 G2 3123326 Nostoc cyanobionts 0.01 1 1 S 1261031 Nostoc sp. 'Peltigera membranacea cyanobiont' N6 0.01 1 0 O 1890424 Synechococcales 0.01 1 0 F 1890426 Synechococcaceae 0.01 1 0 G 1129 Synechococcus 0.01 1 1 G1 2626047 unclassified Synechococcus 0.01 1 0 O 1890505 Chroococcidiopsidales 0.01 1 0 F 1890528 Chroococcidiopsidaceae 0.01 1 1 G 54298 Chroococcidiopsis 0.01 1 0 O 3079749 Leptolyngbyales 0.01 1 0 F 1890438 Leptolyngbyaceae 0.01 1 0 F1 3081713 Leptolyngbya group 0.01 1 0 G 47251 Leptolyngbya 0.01 1 0 G1 2650499 unclassified Leptolyngbya 0.01 1 1 S 2812896 Leptolyngbya sp. 7M 0.09 12 8 P 544448 Mycoplasmatota 0.01 2 0 C 31969 Mollicutes 0.01 1 0 O 186328 Entomoplasmatales 0.01 1 0 F 2131 Spiroplasmataceae 0.01 1 0 G 2132 Spiroplasma 0.01 1 1 S 2141 Spiroplasma ixodetis 0.01 1 0 O 186329 Acholeplasmatales 0.01 1 0 F 2146 Acholeplasmataceae 0.01 1 1 G 33926 Candidatus Phytoplasma 0.01 2 0 O 2790996 Mycoplasmoidales 0.01 1 0 F 2790998 Mycoplasmoidaceae 0.01 1 0 G 2791001 Malacoplasma 0.01 1 0 S 28227 Malacoplasma penetrans 0.01 1 1 S1 272633 Malacoplasma penetrans HF-2 0.01 1 0 F 2895623 Metamycoplasmataceae 0.01 1 0 G 2767358 Mycoplasmopsis 0.01 1 1 S 2109 Mycoplasmopsis synoviae 0.02 3 0 P 200795 Chloroflexota 0.01 1 0 C 32061 Chloroflexia 0.01 1 1 O 32064 Chloroflexales 0.01 1 0 C 301297 Dehalococcoidia 0.01 1 0 O 1202465 Dehalococcoidales 0.01 1 0 F 1202464 Dehalococcoidaceae 0.01 1 1 G 61434 Dehalococcoides 0.01 1 0 C 388447 Ktedonobacteria 0.01 1 0 O 388448 Ktedonobacterales 0.01 1 0 F 2692416 Ktedonosporobacteraceae 0.01 1 0 G 2692417 Ktedonosporobacter 0.01 1 1 S 2509675 Ktedonosporobacter rubrisoli 0.01 2 0 P 1297 Deinococcota 0.01 2 0 C 188787 Deinococci 0.01 2 0 O 118964 Deinococcales 0.01 2 0 F 183710 Deinococcaceae 0.01 2 0 G 1298 Deinococcus 0.01 2 2 S 200252 Deinococcus aetherius 0.54 73 0 D1 1783270 FCB group 0.53 72 0 D2 68336 Bacteroidota/Chlorobiota group 0.47 64 2 P 976 Bacteroidota 0.21 28 0 C 200643 Bacteroidia 0.20 27 1 O 171549 Bacteroidales 0.12 16 4 F 171552 Prevotellaceae 0.07 9 0 G 2974251 Segatella 0.05 7 7 S 165179 Segatella copri 0.01 2 2 S 2518605 Segatella hominis 0.01 2 1 G 838 Prevotella 0.01 1 1 S 28128 Prevotella corporis 0.01 1 0 G 2974257 Hoylesella 0.01 1 1 S 28127 Hoylesella buccalis 0.04 6 0 F 815 Bacteroidaceae 0.04 6 0 G 816 Bacteroides 0.04 6 6 S 817 Bacteroides fragilis 0.01 2 0 F 2760872 Tenuifilaceae 0.01 2 0 G 2760873 Tenuifilum 0.01 2 2 S 2590900 Tenuifilum thalassicum 0.01 1 0 F 2005520 Dysgonomonadaceae 0.01 1 0 G 156973 Dysgonomonas 0.01 1 1 S 45254 Dysgonomonas capnocytophagoides 0.01 1 0 F 2005525 Tannerellaceae 0.01 1 1 G 375288 Parabacteroides 0.01 1 0 O 1970189 Marinilabiliales 0.01 1 0 F 558415 Marinilabiliaceae 0.01 1 0 G 1193324 Alkalitalea 0.01 1 1 S 889453 Alkalitalea saponilacus 0.15 20 0 C 768503 Cytophagia 0.15 20 1 O 768507 Cytophagales 0.14 19 0 F 89373 Cytophagaceae 0.14 19 0 G 107 Spirosoma 0.13 18 18 S 2666025 Spirosoma endbachense 0.01 1 1 S 564064 Spirosoma rigui 0.07 9 0 C 117743 Flavobacteriia 0.07 9 1 O 200644 Flavobacteriales 0.04 5 0 F 2762318 Weeksellaceae 0.02 3 0 F1 2782232 Chryseobacterium group 0.02 3 0 G 59732 Chryseobacterium 0.01 1 1 S 1493872 Chryseobacterium shandongense 0.01 1 0 G1 2593645 unclassified Chryseobacterium 0.01 1 1 S 2713414 Chryseobacterium sp. POL2 0.01 1 1 S 536441 Chryseobacterium taklimakanense 0.01 1 0 G 28250 Ornithobacterium 0.01 1 1 S 2497989 Candidatus Ornithobacterium hominis 0.01 1 1 G 501783 Cloacibacterium 0.02 3 0 F 49546 Flavobacteriaceae 0.01 2 0 G 237 Flavobacterium 0.01 1 1 S 96345 Flavobacterium psychrophilum 0.01 1 0 G1 196869 unclassified Flavobacterium 0.01 1 1 S 2977321 Flavobacterium sp. TR2 0.01 1 0 G 326319 Dokdonia 0.01 1 0 G1 2615033 unclassified Dokdonia 0.01 1 1 S 983548 Dokdonia sp. 4H-3-7-5 0.03 4 0 C 117747 Sphingobacteriia 0.03 4 0 O 200666 Sphingobacteriales 0.03 4 0 F 84566 Sphingobacteriaceae 0.02 3 1 G 28453 Sphingobacterium 0.01 1 0 G1 2609468 unclassified Sphingobacterium 0.01 1 1 S 2853439 Sphingobacterium sp. E70 0.01 1 1 S 3025669 Sphingobacterium oryzagri 0.01 1 0 G 423349 Mucilaginibacter 0.01 1 1 S 551996 Mucilaginibacter gossypii 0.01 1 0 P1 171558 Bacteroidetes incertae sedis 0.01 1 0 O 2923288 Candidatus Sulfidibacteriales 0.01 1 0 G 2923290 Candidatus Sulfidibacterium 0.01 1 1 S 2875962 Candidatus Sulfidibacterium hydrothermale 0.03 4 0 P 1090 Chlorobiota 0.03 4 0 C 191410 Chlorobiia 0.03 4 0 O 191411 Chlorobiales 0.03 4 0 F 2968741 Chloroherpetonaceae 0.03 4 0 G 100715 Chloroherpeton 0.03 4 0 S 100716 Chloroherpeton thalassium 0.03 4 4 S1 517418 Chloroherpeton thalassium ATCC 35110 0.03 4 0 P 1853220 Rhodothermota 0.03 4 0 C 1853222 Rhodothermia 0.03 4 0 O 1853224 Rhodothermales 0.03 4 0 F 563843 Rhodothermaceae 0.03 4 0 G 2893090 Rhodocaloribacter 0.03 4 4 S 2558931 Rhodocaloribacter litoris 0.01 1 0 P 456828 Candidatus Cloacimonadota 0.01 1 0 C 3039863 Candidatus Cloacimonadia 0.01 1 0 O 3039864 Candidatus Cloacimonadales 0.01 1 0 F 3039865 Candidatus Cloacimonadaceae 0.01 1 0 G 456826 Candidatus Cloacimonas 0.01 1 0 S 456827 Candidatus Cloacimonas acidaminovorans 0.01 1 1 S1 459349 Candidatus Cloacimonas acidaminovorans str. Evry 0.17 23 1 P 200940 Thermodesulfobacteriota 0.15 20 0 C 3031651 Desulfuromonadia 0.15 20 0 O 69541 Desulfuromonadales 0.15 20 0 F 213421 Desulfuromonadaceae 0.15 20 20 G 890 Desulfuromonas 0.01 1 0 C 67799 Thermodesulfobacteria 0.01 1 1 O 188710 Thermodesulfobacteriales 0.01 1 0 C 3031451 Desulfobulbia 0.01 1 0 O 3024411 Desulfobulbales 0.01 1 0 F 2886822 Desulfocapsaceae 0.01 1 0 G 51194 Desulfofustis 0.01 1 1 S 2740163 Desulfofustis limnaeus 0.08 11 0 D1 1783257 PVC group 0.06 8 0 P 74201 Verrucomicrobiota 0.03 4 0 C 203494 Verrucomicrobiia 0.03 4 0 O 48461 Verrucomicrobiales 0.03 4 0 F 203557 Verrucomicrobiaceae 0.03 4 0 G 2735 Verrucomicrobium 0.03 4 0 G1 2625155 unclassified Verrucomicrobium 0.03 4 4 S 1882831 Verrucomicrobium sp. GAS474 0.03 4 0 C 414999 Opitutia 0.02 3 0 O 415001 Puniceicoccales 0.02 3 0 O1 3056381 Puniceicoccales incertae sedis 0.02 3 0 G 3049269 Candidatus Pelagisphaera 0.02 3 3 S 2684113 Candidatus Pelagisphaera phototrophica 0.01 1 0 O 415000 Opitutales 0.01 1 1 F 134623 Opitutaceae 0.02 3 0 P 203682 Planctomycetota 0.02 3 0 C 203683 Planctomycetia 0.01 2 0 O 2691355 Gemmatales 0.01 2 1 F 1914233 Gemmataceae 0.01 1 0 G 2774146 Frigoriglobus 0.01 1 1 S 2774151 Frigoriglobus tundricola 0.01 1 0 O 112 Planctomycetales 0.01 1 0 F 126 Planctomycetaceae 0.01 1 0 G 2714737 Alienimonas 0.01 1 1 S 2527989 Alienimonas californiensis 0.04 6 0 P 508458 Synergistota 0.04 6 0 C 649775 Synergistia 0.04 6 0 O 649776 Synergistales 0.04 5 0 F 649777 Synergistaceae 0.04 5 0 G 81411 Aminomonas 0.04 5 0 S 81412 Aminomonas paucivorans 0.04 5 5 S1 584708 Aminomonas paucivorans DSM 12260 0.01 1 0 F 3029085 Aminithiophilaceae 0.01 1 0 G 3029078 Aminithiophilus 0.01 1 1 S 3029084 Aminithiophilus ramosus 0.04 5 0 D1 2323 Bacteria incertae sedis 0.04 5 0 D2 1783234 Bacteria candidate phyla 0.02 3 0 D3 95901 Candidatus Dependentiae 0.02 3 0 C 2497643 Candidatus Babeliae 0.02 3 0 O 2497644 Candidatus Babeliales 0.02 3 0 F 2953756 Candidatus Chromulinivoraceae 0.02 3 0 G 2953757 Candidatus Chromulinivorax 0.02 3 3 S 2066483 Candidatus Chromulinivorax destructor 0.01 1 1 P 95818 Candidatus Saccharibacteria 0.01 1 0 P 221235 Candidatus Absconditabacteria 0.01 1 0 O 2900568 Candidatus Absconditabacterales 0.01 1 0 F 2900569 Candidatus Absconditicoccaceae 0.01 1 0 G 2900570 Candidatus Absconditicoccus 0.01 1 1 S 2735562 Candidatus Absconditicoccus praedator 0.02 3 0 P 32066 Fusobacteriota 0.02 3 0 C 203490 Fusobacteriia 0.02 3 0 O 203491 Fusobacteriales 0.02 3 0 F 1129771 Leptotrichiaceae 0.02 3 0 G 32067 Leptotrichia 0.01 2 2 S 554406 Leptotrichia hongkongensis 0.01 1 0 G1 2633022 unclassified Leptotrichia 0.01 1 1 S 712357 Leptotrichia sp. oral taxon 212 0.01 1 0 P 2818505 Myxococcota 0.01 1 0 P1 3031711 Polyangia 0.01 1 0 O 3031714 Haliangiales 0.01 1 0 F 224464 Kofleriaceae 0.01 1 0 G 162027 Haliangium 0.01 1 0 S 80816 Haliangium ochraceum 0.01 1 1 S1 502025 Haliangium ochraceum DSM 14365 0.01 1 0 P 57723 Acidobacteriota 0.01 1 0 C 533205 Holophagae 0.01 1 0 O 574975 Holophagales 0.01 1 0 F 574976 Holophagaceae 0.01 1 1 G 44675 Geothrix 0.01 1 0 D 10239 Viruses 0.01 1 0 C 2840056 Naldaviricetes 0.01 1 0 O 2840070 Lefavirales 0.01 1 0 F 10442 Baculoviridae 0.01 1 0 G 558017 Betabaculovirus 0.01 1 0 S 3051997 Betabaculovirus chofumiferanae 0.01 1 1 S1 56947 Choristoneura fumiferana granulovirus