0.52 180 180 U 0 unclassified 99.48 34541 2 R 1 root 99.48 34539 0 R1 131567 cellular organisms 99.48 34539 9721 D 2 Bacteria 53.32 18512 198 P 1224 Pseudomonadota 49.91 17329 1095 C 1236 Gammaproteobacteria 38.87 13496 960 O 91347 Enterobacterales 32.25 11197 1249 F 543 Enterobacteriaceae 15.59 5412 112 G 561 Escherichia 15.12 5250 4874 S 562 Escherichia coli 0.28 98 98 S1 316435 Escherichia coli Nissle 1917 0.25 88 10 S1 83334 Escherichia coli O157:H7 0.17 59 59 S2 155864 Escherichia coli O157:H7 str. EDL933 0.05 16 16 S2 502346 Escherichia coli O157:H7 str. TW14588 0.01 3 3 S2 1328859 Escherichia coli O157:H7 str. SS17 0.14 47 47 S1 2079157 Escherichia coli O2:H1 0.10 35 35 S1 1322345 Escherichia coli ATCC 25922 0.07 26 26 S1 1446600 Escherichia coli O15:H18 0.07 25 25 S1 331112 Escherichia coli HS 0.06 21 21 S1 2874053 Escherichia coli O25:H1 0.04 15 15 S1 655817 Escherichia coli ABU 83972 0.03 10 10 S1 244320 Escherichia coli O55:H7 0.01 5 0 S1 1038927 Escherichia coli O104:H4 0.01 5 5 S2 1134782 Escherichia coli O104:H4 str. 2009EL-2050 0.01 2 2 S1 376725 Escherichia coli O103:H2 0.01 2 2 S1 439855 Escherichia coli SMS-3-5 0.00 1 1 S1 362663 Escherichia coli 536 0.00 1 1 S1 2027293 Escherichia coli O8:H8 0.09 30 30 S 1499973 Escherichia marmotae 0.04 15 15 S 208962 Escherichia albertii 0.01 5 5 S 564 Escherichia fergusonii 5.27 1830 28 G 590 Salmonella 5.05 1754 394 S 28901 Salmonella enterica 3.92 1360 55 S1 59201 Salmonella enterica subsp. enterica 1.23 426 426 S2 2583588 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- 0.74 256 0 S2 58096 Salmonella enterica subsp. enterica serovar Bareilly 0.69 241 241 S3 1182177 Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000752 0.03 12 12 S3 1182172 Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000661 0.01 3 3 S3 1173427 Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000189 0.42 145 145 S2 600 Salmonella enterica subsp. enterica serovar Thompson 0.40 138 5 S2 611 Salmonella enterica subsp. enterica serovar Heidelberg 0.37 127 127 S3 1124936 Salmonella enterica subsp. enterica serovar Heidelberg str. 41578 0.02 6 6 S3 1160717 Salmonella enterica subsp. enterica serovar Heidelberg str. B182 0.35 123 123 S2 149539 Salmonella enterica subsp. enterica serovar Enteritidis 0.29 99 99 S2 2579247 Salmonella enterica subsp. enterica serovar Rough O:-:- 0.12 42 26 S2 90371 Salmonella enterica subsp. enterica serovar Typhimurium 0.03 12 12 S3 1454647 Salmonella enterica subsp. enterica serovar Typhimurium str. USDA-ARS-USMARC-1810 0.01 4 4 S3 1008297 Salmonella enterica subsp. enterica serovar Typhimurium str. 798 0.06 20 20 S2 90105 Salmonella enterica subsp. enterica serovar Saintpaul 0.05 16 16 S2 90370 Salmonella enterica subsp. enterica serovar Typhi 0.04 15 0 S2 1242084 Salmonella enterica subsp. enterica serovar Krefeld 0.04 15 15 S3 1242106 Salmonella enterica subsp. enterica serovar Krefeld str. SA20030536 0.04 14 14 S2 115981 Salmonella enterica subsp. enterica serovar Montevideo 0.01 4 1 S2 108619 Salmonella enterica subsp. enterica serovar Newport 0.01 3 3 S3 858307 Salmonella enterica subsp. enterica serovar Newport str. CVM N1543 0.01 4 4 S2 29474 Salmonella enterica subsp. enterica serovar California 0.00 1 1 S2 595 Salmonella enterica subsp. enterica serovar Infantis 0.00 1 1 S2 192955 Salmonella enterica subsp. enterica serovar Kentucky 0.00 1 1 S2 58712 Salmonella enterica subsp. enterica serovar Anatum 0.14 48 0 S 54736 Salmonella bongori 0.14 48 48 S1 1299282 Salmonella bongori CFSAN000510 3.99 1386 0 G 547 Enterobacter 3.95 1373 1 G1 354276 Enterobacter cloacae complex 2.81 977 977 S 299767 Enterobacter ludwigii 0.87 301 296 S 158836 Enterobacter hormaechei 0.01 5 5 S1 1296536 Enterobacter hormaechei subsp. xiangfangensis 0.12 40 40 S 208224 Enterobacter kobei 0.08 29 4 S 550 Enterobacter cloacae 0.07 25 25 S1 336306 Enterobacter cloacae subsp. cloacae 0.05 19 19 S 61645 Enterobacter asburiae 0.01 5 5 S 1812935 Enterobacter roggenkampii 0.00 1 1 S 3029761 Enterobacter pasteurii 0.04 13 13 S 881260 Enterobacter bugandensis 1.68 584 0 F1 2890311 Klebsiella/Raoultella group 1.65 572 7 G 570 Klebsiella 1.30 452 388 S 573 Klebsiella pneumoniae 0.09 32 29 S1 72407 Klebsiella pneumoniae subsp. pneumoniae 0.01 3 3 S2 1094170 Klebsiella pneumoniae subsp. pneumoniae KPNIH10 0.09 32 32 S1 1049565 Klebsiella pneumoniae KCTC 2242 0.10 33 6 S 1463165 Klebsiella quasipneumoniae 0.08 27 27 S1 1667327 Klebsiella quasipneumoniae subsp. quasipneumoniae 0.09 32 32 S 548 Klebsiella aerogenes 0.07 26 17 S 244366 Klebsiella variicola 0.03 9 9 S1 640131 Klebsiella variicola At-22 0.04 15 15 S 1134687 Klebsiella michiganensis 0.01 4 0 G1 2608929 unclassified Klebsiella 0.01 2 2 S 2851540 Klebsiella sp. PL-2018 0.01 2 2 S 2829835 Klebsiella sp. P1954 0.01 2 2 S 2153354 Klebsiella huaxiensis 0.00 1 1 S 1259973 Klebsiella electrica 0.03 12 0 G 160674 Raoultella 0.03 12 12 S 54291 Raoultella ornithinolytica 0.40 139 3 G 544 Citrobacter 0.30 105 0 G1 1344959 Citrobacter freundii complex 0.16 57 57 S 1639133 Citrobacter portucalensis 0.08 29 29 S 67828 Citrobacter gillenii 0.03 10 10 S 546 Citrobacter freundii 0.02 7 0 G2 2816438 unclassified Citrobacter freundii complex 0.02 6 6 S 1686385 Citrobacter sp. BIDMC108 0.00 1 1 S 2066049 Citrobacter freundii complex sp. CFNIH2 0.00 1 1 S 57706 Citrobacter braakii 0.00 1 1 S 67827 Citrobacter werkmanii 0.05 16 0 S 35703 Citrobacter amalonaticus 0.05 16 16 S1 1261127 Citrobacter amalonaticus Y19 0.04 14 14 S 2971264 Citrobacter enshiensis 0.00 1 1 S 545 Citrobacter koseri 0.32 111 1 G 620 Shigella 0.30 103 103 S 623 Shigella flexneri 0.02 7 7 S 621 Shigella boydii 0.31 107 0 F1 191675 Enterobacteriaceae incertae sedis 0.31 107 1 F2 84563 ant, tsetse, mealybug, aphid, etc. endosymbionts 0.19 67 0 F3 84564 ant endosymbionts 0.10 34 0 G 203804 Candidatus Blochmanniella 0.09 30 16 G1 711328 unclassified Candidatus Blochmanniella 0.04 14 14 S 1505596 Blochmannia endosymbiont of Polyrhachis (Hedomyrma) turneri 0.01 4 0 S 251535 Candidatus Blochmanniella vafra 0.01 4 4 S1 859654 Candidatus Blochmanniella vafra str. BVAF 0.10 33 0 G 1699619 Candidatus Westeberhardia 0.10 33 33 S 1594731 Candidatus Westeberhardia cardiocondylae 0.06 21 0 G 1302410 Candidatus Annandia 0.06 21 21 S 1302411 Candidatus Annandia adelgestsuga 0.04 15 0 F3 146507 aphid secondary symbionts 0.02 7 7 S 1199245 secondary endosymbiont of Ctenarytaina eucalypti 0.01 4 2 G 568987 Candidatus Hamiltonella 0.01 2 2 S 138072 Candidatus Hamiltonella defensa 0.01 3 0 G 568988 Candidatus Regiella 0.01 3 0 G1 3077955 unclassified Candidatus Regiella 0.01 3 3 S 3077956 Candidatus Regiella endosymbiont of Tuberolachnus salignus 0.00 1 1 S 134287 secondary endosymbiont of Heteropsylla cubana 0.00 1 0 G 472825 Candidatus Purcelliella 0.00 1 1 S 472834 Candidatus Purcelliella pentastirinorum 0.00 1 0 G 1906657 Candidatus Doolittlea 0.00 1 1 S 1778262 Candidatus Doolittlea endobia 0.00 1 0 G 1906660 Candidatus Mikella 0.00 1 1 S 1778264 Candidatus Mikella endobia 0.25 88 9 F1 36866 unclassified Enterobacteriaceae 0.10 36 36 S 2675793 Enterobacteriaceae endosymbiont of Plateumaris braccata 0.10 35 35 S 2675787 Enterobacteriaceae endosymbiont of Donacia tomentosa 0.02 6 6 S 2675780 Enterobacteriaceae endosymbiont of Donacia piscatrix 0.01 2 2 S 2675786 Enterobacteriaceae endosymbiont of Donacia thalassina 0.25 86 0 G 2815296 Jejubacter 0.25 86 86 S 2579935 Jejubacter calystegiae 0.24 82 0 G 1330547 Kosakonia 0.22 76 76 S 208223 Kosakonia cowanii 0.02 6 6 S 283686 Kosakonia radicincitans 0.10 34 0 G 409304 Candidatus Ishikawella 0.10 34 0 S 168169 Candidatus Ishikawella capsulata 0.10 34 34 S1 476281 Candidatus Ishikawaella capsulata Mpkobe 0.06 20 0 G 1048757 Candidatus Moranella 0.06 20 20 S 1048758 Candidatus Moranella endobia 0.05 18 0 G 1330545 Lelliottia 0.05 18 18 S 61646 Lelliottia amnigena 0.05 16 0 G 2303321 Superficieibacter 0.05 16 0 G1 2645744 unclassified Superficieibacter 0.05 16 16 S 3031919 Superficieibacter sp. HKU1 0.04 14 0 G 1177214 Candidatus Profftia 0.04 14 0 G1 2735709 unclassified Candidatus Profftia 0.04 14 14 S 2864218 Candidatus Profftia sp. (ex Adelges kitamiensis) 0.02 8 0 G 2726810 Scandinavium 0.02 8 8 S 1851514 Scandinavium goeteborgense 0.01 4 0 G 702 Plesiomonas 0.01 4 4 S 703 Plesiomonas shigelloides 0.01 3 2 G 158483 Cedecea 0.00 1 1 S 158823 Cedecea lapagei 0.00 1 1 G 579 Kluyvera 0.00 1 0 G 1335483 Shimwellia 0.00 1 1 S 563 Shimwellia blattae 0.00 1 0 G 1081630 Candidatus Schneideria 0.00 1 1 S 1081631 Candidatus Schneideria nysicola 0.00 1 0 G 451512 Mangrovibacter 0.00 1 1 S 1691903 Mangrovibacter phragmitis 0.00 1 1 G 413496 Cronobacter 0.00 1 0 G 82976 Buttiauxella 0.00 1 0 G1 2634062 unclassified Buttiauxella 0.00 1 1 S 2986951 Buttiauxella sp. WJP83 1.70 590 0 F 2812006 Bruguierivoracaceae 1.70 590 0 G 84565 Sodalis 1.36 471 471 S 2697027 Sodalis ligni 0.30 105 0 S 1486991 Candidatus Sodalis pierantonius 0.30 105 105 S1 2342 Candidatus Sodalis pierantonius str. SOPE 0.03 9 0 G1 2636512 unclassified Sodalis 0.03 9 9 S 1929246 Sodalis endosymbiont of Henestaris halophilus 0.01 5 5 S 1239307 Sodalis praecaptivus 0.86 298 0 F 1903411 Yersiniaceae 0.57 198 0 G 613 Serratia 0.36 125 125 S 138074 Serratia symbiotica 0.07 25 25 S 61652 Serratia rubidaea 0.07 25 25 S 614 Serratia liquefaciens 0.03 12 0 S 82996 Serratia plymuthica 0.03 12 12 S1 1006598 Serratia plymuthica RVH1 0.03 11 0 G1 2647522 unclassified Serratia (in: enterobacteria) 0.03 11 11 S 2785630 Serratia sp. CMO1 0.25 88 0 G 629 Yersinia 0.21 72 0 G1 1649845 Yersinia pseudotuberculosis complex 0.21 72 3 S 632 Yersinia pestis 0.17 60 60 S1 748678 Yersinia pestis str. Pestoides B 0.01 5 5 S1 649716 Yersinia pestis Pestoides G 0.01 4 4 S1 360102 Yersinia pestis Antiqua 0.04 15 15 S 935293 Yersinia entomophaga 0.00 1 1 S 631 Yersinia intermedia 0.03 11 11 G 1927833 Candidatus Fukatsuia 0.00 1 0 G 1745211 Chania 0.00 1 0 S 1639108 Chania multitudinisentens 0.00 1 1 S1 1441930 Chania multitudinisentens RB-25 0.49 169 13 F 1903414 Morganellaceae 0.15 51 0 G 581 Morganella 0.15 51 46 S 582 Morganella morganii 0.01 5 5 S1 180434 Morganella morganii subsp. morganii 0.13 45 1 G 637 Arsenophonus 0.09 30 0 G1 2627083 unclassified Arsenophonus 0.07 23 23 S 3041619 Arsenophonus sp. aPb 0.02 7 7 S 3066235 Arsenophonus endosymbiont of Crataerina pallida 0.03 11 11 S 638 Arsenophonus nasoniae 0.01 3 3 S 634113 Candidatus Arsenophonus lipoptenae 0.10 35 0 G 583 Proteus 0.10 33 33 S 584 Proteus mirabilis 0.00 1 1 S 102862 Proteus penneri 0.00 1 0 S 1574161 Proteus terrae 0.00 1 1 S1 626774 Proteus terrae subsp. cibarius 0.03 9 0 G 586 Providencia 0.02 6 6 S 1715285 Candidatus Providencia siddallii 0.01 3 0 S 516075 Providencia sneebia 0.01 3 3 S1 1141660 Providencia sneebia DSM 19967 0.02 8 0 G 626 Xenorhabdus 0.02 6 0 S 40577 Xenorhabdus poinarii 0.02 6 6 S1 1354304 Xenorhabdus poinarii G6 0.00 1 0 S 40576 Xenorhabdus bovienii 0.00 1 1 S1 406818 Xenorhabdus bovienii SS-2004 0.00 1 1 S 351671 Xenorhabdus doucetiae 0.02 8 7 G 29487 Photorhabdus 0.00 1 0 S 2218628 Photorhabdus laumondii 0.00 1 1 S1 141679 Photorhabdus laumondii subsp. laumondii 0.46 160 2 F 1903409 Erwiniaceae 0.25 88 0 G 551 Erwinia 0.18 62 62 S 1922217 Candidatus Erwinia haradaeae 0.07 24 0 G1 2622719 unclassified Erwinia 0.07 24 24 S 215689 Erwinia sp. Ejp617 0.01 2 2 S 65700 Erwinia tracheiphila 0.13 45 2 G 53335 Pantoea 0.07 26 26 S 59814 Pantoea dispersa 0.04 14 14 S 1235990 Candidatus Pantoea carbekii 0.01 3 3 S 66269 Pantoea stewartii 0.06 20 0 G 32199 Buchnera 0.06 20 11 S 9 Buchnera aphidicola 0.01 3 3 S1 1241860 Buchnera aphidicola (Hyperomyzus lactucae) 0.01 3 3 S1 1241865 Buchnera aphidicola (Macrosiphoniella sanborni) 0.01 2 2 S1 2315800 Buchnera aphidicola (Stegophylla sp.) 0.00 1 1 S1 1965431 Buchnera aphidicola (Ceratoglyphina bambusae) 0.01 4 0 G 2997349 Winslowiella 0.01 4 4 S 92490 Winslowiella toletana 0.00 1 0 G 51228 Wigglesworthia 0.00 1 0 S 51229 Wigglesworthia glossinidia 0.00 1 0 S1 36868 Wigglesworthia glossinidia endosymbiont of Glossina morsitans 0.00 1 1 S2 1142511 Wigglesworthia glossinidia endosymbiont of Glossina morsitans morsitans (Yale colony) 0.29 100 0 F 1903410 Pectobacteriaceae 0.15 52 0 G 122277 Pectobacterium 0.09 30 25 S 1905730 Pectobacterium parmentieri 0.01 5 5 S1 561231 Pectobacterium parmentieri WPP163 0.05 18 18 S 2488639 Pectobacterium versatile 0.01 3 3 S 180957 Pectobacterium brasiliense 0.00 1 0 G1 2627739 unclassified Pectobacterium 0.00 1 1 S 2738983 Pectobacterium sp. PL64 0.14 47 14 G 204037 Dickeya 0.05 18 18 S 1089444 Dickeya solani 0.03 10 10 S 1778540 Dickeya fangzhongdai 0.01 3 0 S 204038 Dickeya dadantii 0.01 3 3 S1 1224149 Dickeya dadantii NCPPB 3537 0.01 2 2 S 204042 Dickeya zeae 0.00 1 0 G 71655 Brenneria 0.00 1 1 S 55213 Brenneria rubrifaciens 0.04 14 0 F 1903412 Hafniaceae 0.04 14 12 G 635 Edwardsiella 0.01 2 2 S 636 Edwardsiella tarda 0.02 6 0 F 3120698 Gallaecimonadaceae 0.02 6 0 G 745410 Gallaecimonas 0.02 6 6 S 3029055 Gallaecimonas kandeliae 0.01 2 0 F 1903416 Budviciaceae 0.01 2 0 G 82984 Pragia 0.01 2 2 S 82985 Pragia fontium 1.79 623 0 O 135625 Pasteurellales 1.79 623 6 F 712 Pasteurellaceae 1.75 606 0 G 713 Actinobacillus 1.72 597 0 S 718 Actinobacillus equuli 1.72 597 597 S1 202948 Actinobacillus equuli subsp. haemolyticus 0.03 9 9 S 157339 Actinobacillus arthritidis 0.01 5 0 G 745 Pasteurella 0.01 5 5 S 747 Pasteurella multocida 0.01 4 0 G 155493 Gallibacterium 0.01 4 4 S 750 Gallibacterium anatis 0.00 1 0 G 724 Haemophilus 0.00 1 1 S 729 Haemophilus parainfluenzae 0.00 1 0 G 2899790 Mergibacter 0.00 1 1 S 221402 Mergibacter septicus 1.32 458 0 O 135623 Vibrionales 1.32 458 31 F 641 Vibrionaceae 1.00 347 6 G 662 Vibrio 0.66 229 0 S 52443 Vibrio tapetis 0.66 229 229 S1 1671868 Vibrio tapetis subsp. tapetis 0.11 39 38 S 666 Vibrio cholerae 0.00 1 1 S1 345073 Vibrio cholerae O395 0.08 28 0 G1 717610 Vibrio harveyi group 0.07 26 26 S 670 Vibrio parahaemolyticus 0.01 2 2 S 669 Vibrio harveyi 0.05 18 2 G1 2614977 unclassified Vibrio 0.04 15 15 S 2661921 Vibrio sp. THAF191c 0.00 1 1 S 2661922 Vibrio sp. THAF191d 0.04 13 13 S 2572923 Vibrio taketomensis 0.02 6 0 S 672 Vibrio vulnificus 0.02 6 6 S1 914127 Vibrio vulnificus MO6-24/O 0.02 6 0 G1 87806 environmental samples 0.02 6 6 S 114054 uncultured Vibrio sp. 0.00 1 1 S 29495 Vibrio navarrensis 0.00 1 1 S 28169 Vibrio pelagius 0.23 79 1 G 657 Photobacterium 0.19 65 13 S 553611 Photobacterium leiognathi 0.15 52 52 S1 48408 Photobacterium leiognathi subsp. mandapamensis 0.03 11 0 S 38293 Photobacterium damselae 0.02 7 7 S1 38294 Photobacterium damselae subsp. piscicida 0.01 4 4 S1 85581 Photobacterium damselae subsp. damselae 0.01 2 2 G1 2628852 unclassified Photobacterium 0.00 1 0 G 511678 Aliivibrio 0.00 1 0 S 40269 Aliivibrio salmonicida 0.00 1 1 S1 316275 Aliivibrio salmonicida LFI1238 1.22 425 0 O 135624 Aeromonadales 1.22 425 66 F 84642 Aeromonadaceae 0.65 224 2 G 642 Aeromonas 0.47 162 162 S 654 Aeromonas veronii 0.09 31 31 S 652 Aeromonas schubertii 0.07 24 0 G1 257493 unclassified Aeromonas 0.06 22 22 S 2560029 Aeromonas sp. 2692-1 0.01 2 2 S 2920537 Aeromonas sp. 19NY04SH05-1 0.01 4 4 S 648 Aeromonas caviae 0.00 1 1 S 644 Aeromonas hydrophila 0.35 122 0 G 225143 Oceanisphaera 0.35 122 122 S 1903694 Oceanisphaera avium 0.03 10 0 G 43947 Tolumonas 0.03 10 10 S 43948 Tolumonas auensis 0.01 3 0 G 347533 Zobellella 0.01 3 3 S 347534 Zobellella denitrificans 0.93 323 3 O 135622 Alteromonadales 0.46 158 0 F 267888 Pseudoalteromonadaceae 0.43 150 0 G 2834759 Flocculibacter 0.43 150 150 S 2744479 Flocculibacter collagenilyticus 0.02 8 0 G 53246 Pseudoalteromonas 0.02 8 0 G1 194690 unclassified Pseudoalteromonas 0.02 6 6 S 649161 Pseudoalteromonas sp. 3J6 0.01 2 2 S 2785910 Pseudoalteromonas sp. A41-2 0.24 83 0 F 267890 Shewanellaceae 0.24 83 22 G 22 Shewanella 0.09 32 32 S 62322 Shewanella baltica 0.05 17 17 S 2018305 Shewanella bicestrii 0.03 11 11 S 712036 Shewanella dokdonensis 0.00 1 1 G1 196818 unclassified Shewanella 0.22 77 0 F 72275 Alteromonadaceae 0.22 76 0 F1 2903219 Alteromonas/Salinimonas group 0.22 76 0 G 226 Alteromonas 0.22 76 0 G1 2614992 unclassified Alteromonas 0.22 75 75 S 2267264 Alteromonas sp. RKMC-009 0.00 1 1 S 2961948 Alteromonas sp. LMIT006 0.00 1 0 G 1751872 Lacimicrobium 0.00 1 1 S 1526571 Lacimicrobium alkaliphilum 0.01 2 1 F 267893 Idiomarinaceae 0.00 1 1 G 135575 Idiomarina 0.84 292 0 O 2887326 Moraxellales 0.84 292 11 F 468 Moraxellaceae 0.68 237 10 G 469 Acinetobacter 0.59 204 0 G1 909768 Acinetobacter calcoaceticus/baumannii complex 0.46 160 160 S 470 Acinetobacter baumannii 0.13 44 43 S 48296 Acinetobacter pittii 0.00 1 1 S1 871585 Acinetobacter pittii PHEA-2 0.04 14 11 G1 196816 unclassified Acinetobacter 0.00 1 1 S 2919376 Acinetobacter sp. AOR07_HL 0.00 1 1 S 1827285 Acinetobacter sp. MYb10 0.00 1 1 S 2983215 Acinetobacter sp. ESL0695 0.02 7 7 S 40214 Acinetobacter johnsonii 0.01 2 2 S 202956 Acinetobacter towneri 0.11 38 17 G 475 Moraxella 0.06 20 20 S 2904120 Moraxella nasibovis 0.00 1 1 S 90241 Moraxella lincolnii 0.02 6 4 G 497 Psychrobacter 0.01 2 2 G1 196806 unclassified Psychrobacter 0.50 175 0 O 72274 Pseudomonadales 0.49 169 2 F 135621 Pseudomonadaceae 0.46 161 40 G 286 Pseudomonas 0.13 44 0 G1 136845 Pseudomonas putida group 0.13 44 43 S 303 Pseudomonas putida 0.00 1 1 S1 1196325 Pseudomonas putida DOT-T1E 0.10 33 0 G1 136841 Pseudomonas aeruginosa group 0.09 32 31 S 287 Pseudomonas aeruginosa 0.00 1 1 S1 381754 Pseudomonas aeruginosa PA7 0.00 1 0 G2 1232139 Pseudomonas oleovorans/pseudoalcaligenes group 0.00 1 1 S 1149133 Pseudomonas furukawaii 0.07 24 0 G1 196821 unclassified Pseudomonas 0.06 20 20 S 2025658 Pseudomonas sp. NS1(2017) 0.00 1 1 S 2954086 Pseudomonas sp. FP2196 0.00 1 1 S 2954088 Pseudomonas sp. FP2262 0.00 1 1 S 3019968 Pseudomonas sp. MM227 0.00 1 1 S 2748080 Pseudomonas sp. ABC1 0.03 10 10 S 1302376 Candidatus Pseudomonas adelgestsugas 0.01 3 0 G1 136843 Pseudomonas fluorescens group 0.01 2 0 S 47883 Pseudomonas synxantha 0.01 2 2 S1 96901 Pseudomonas synxantha BG33R 0.00 1 1 S 47878 Pseudomonas azotoformans 0.01 2 2 S 437900 Pseudomonas marincola 0.01 2 2 S 321846 Pseudomonas simiae 0.00 1 1 S 2738125 Pseudomonas hefeiensis 0.00 1 1 S 2842357 Pseudomonas muyukensis 0.00 1 1 S 1198456 Pseudomonas guguanensis 0.01 4 0 G 1654787 Thiopseudomonas 0.01 4 4 S 1697053 Thiopseudomonas alkaliphila 0.01 2 0 G 2901164 Stutzerimonas 0.01 2 0 G1 136846 Stutzerimonas stutzeri group 0.01 2 0 G2 578833 Stutzerimonas stutzeri subgroup 0.01 2 2 S 316 Stutzerimonas stutzeri 0.01 5 0 F 2887365 Marinobacteraceae 0.01 5 5 G 2742 Marinobacter 0.00 1 0 F 3085096 Ketobacteraceae 0.00 1 0 G 2025617 Ketobacter 0.00 1 1 S 1917421 Ketobacter alkanivorans 0.37 129 0 C1 118884 Gammaproteobacteria incertae sedis 0.36 126 0 G 1076625 Candidatus Steffania 0.36 126 126 S 1076626 Candidatus Steffania adelgidicola 0.01 2 0 G 2738850 Candidatus Reidiella 0.01 2 2 S 2738883 Candidatus Reidiella endopervernicosa 0.00 1 0 G 198346 Candidatus Palibaumannia 0.00 1 1 S 186490 Candidatus Palibaumannia cicadellinicola 0.22 75 0 O 135619 Oceanospirillales 0.16 57 1 F 135620 Oceanospirillaceae 0.07 25 1 G 28253 Marinomonas 0.07 24 24 S 2773454 Marinomonas algicola 0.06 22 0 G 459520 Neptuniibacter 0.06 22 22 S 651666 Neptuniibacter halophilus 0.02 6 6 G 515417 Amphritea 0.01 2 0 G 267849 Nitrincola 0.01 2 2 S 2614693 Nitrincola iocasae 0.00 1 0 G 2893036 Venatoribacter 0.00 1 1 S 2661630 Venatoribacter cucullus 0.03 11 2 F 28256 Halomonadaceae 0.01 5 0 F1 114403 Zymobacter group 0.01 4 0 G 235572 Candidatus Portiera 0.01 4 4 S 91844 Candidatus Portiera aleyrodidarum 0.00 1 0 G 114185 Candidatus Carsonella 0.00 1 1 S 114186 Candidatus Carsonella ruddii 0.01 3 0 G 2745 Halomonas 0.01 2 2 S 3031727 Halomonas piscis 0.00 1 0 G1 2609666 unclassified Halomonas 0.00 1 1 S 2937790 Halomonas sp. ZZQ-149 0.00 1 1 G 504090 Kushneria 0.01 4 0 F 2823145 Pleioneaceae 0.01 4 0 G 1502941 Pleionea 0.01 4 4 S 3070815 Pleionea litopenaei 0.01 2 0 F 224379 Hahellaceae 0.01 2 2 G 158481 Hahella 0.00 1 0 F 255527 Saccharospirillaceae 0.00 1 0 G 231683 Saccharospirillum 0.00 1 1 S 2161747 Saccharospirillum mangrovi 0.20 71 0 O 135613 Chromatiales 0.19 65 0 F 1046 Chromatiaceae 0.08 29 1 G 85072 Allochromatium 0.08 28 28 S 553982 Allochromatium tepidum 0.05 16 0 G 156885 Thioflavicoccus 0.05 16 0 S 80679 Thioflavicoccus mobilis 0.05 16 16 S1 765912 Thioflavicoccus mobilis 8321 0.02 7 6 G 61593 Thiorhodovibrio 0.00 1 1 S 77007 Thiorhodovibrio winogradskyi 0.02 6 6 G 1056 Thiocapsa 0.02 6 0 G 2828366 Caldichromatium 0.02 6 6 S 2699430 Caldichromatium japonicum 0.00 1 1 G 2796146 Candidatus Nitrosacidococcus 0.02 6 0 F 72276 Ectothiorhodospiraceae 0.01 4 0 G 1335745 Spiribacter 0.01 2 2 S 2182432 Spiribacter halobius 0.01 2 0 G1 2629425 unclassified Spiribacter 0.01 2 2 S 2666185 Spiribacter sp. 2438 0.00 1 0 G 106633 Thioalkalivibrio 0.00 1 0 S 1033854 Thioalkalivibrio sulfidiphilus 0.00 1 1 S1 396588 Thioalkalivibrio sulfidiphilus HL-EbGr7 0.00 1 0 G 233099 Ectothiorhodosinus 0.00 1 1 S 233100 Ectothiorhodosinus mongolicus 0.20 69 1 O 135614 Lysobacterales 0.19 67 1 F 32033 Lysobacteraceae 0.13 44 1 G 338 Xanthomonas 0.12 43 43 S 29447 Xanthomonas albilineans 0.03 11 10 G 40323 Stenotrophomonas 0.00 1 1 S 2045451 Stenotrophomonas indicatrix 0.02 6 3 G 83618 Pseudoxanthomonas 0.01 3 0 G1 2645906 unclassified Pseudoxanthomonas 0.01 3 3 S 2969308 Pseudoxanthomonas sp. JBR18 0.01 2 2 G 68 Lysobacter 0.01 2 1 G 83614 Luteimonas 0.00 1 1 S 2565782 Luteimonas yindakuii 0.00 1 0 G 2370 Xylella 0.00 1 1 S 2371 Xylella fastidiosa 0.00 1 1 F 1775411 Rhodanobacteraceae 0.06 21 0 O 72273 Thiotrichales 0.04 14 5 F 135616 Piscirickettsiaceae 0.02 7 0 G 2781121 Thiosulfatimonas 0.02 7 7 S 2675054 Thiosulfatimonas sediminis 0.01 2 1 G 933 Thiomicrospira 0.00 1 0 G1 2643099 unclassified Thiomicrospira 0.00 1 1 S 3035472 Thiomicrospira sp. R3 0.02 7 0 F 135617 Thiotrichaceae 0.01 5 4 G 1030 Thiothrix 0.00 1 1 S 525917 Thiothrix lacustris 0.01 2 0 G 1021 Beggiatoa 0.01 2 2 S 288004 Beggiatoa leptomitoformis 0.06 21 0 O 1706369 Cellvibrionales 0.04 13 1 F 1706371 Cellvibrionaceae 0.02 8 0 G 940550 Gilvimarinus 0.02 8 0 G1 2642066 unclassified Gilvimarinus 0.02 8 8 S 2956798 Gilvimarinus sp. DA14 0.01 4 0 G 10 Cellvibrio 0.01 4 0 G1 2624793 unclassified Cellvibrio 0.01 4 4 S 1987723 Cellvibrio sp. PSBB006 0.01 4 4 F 1706372 Halieaceae 0.01 3 0 F 1706373 Microbulbiferaceae 0.01 3 0 G 48073 Microbulbifer 0.01 2 2 S 86173 Microbulbifer elongatus 0.00 1 0 G1 2619833 unclassified Microbulbifer 0.00 1 1 S 2745199 Microbulbifer sp. YPW1 0.00 1 0 F 1706375 Spongiibacteraceae 0.00 1 0 G 1084558 Oceanicoccus 0.00 1 1 S 716816 Oceanicoccus sagamiensis 0.05 17 0 O 3084968 Thiohalomonadales 0.05 17 0 F 3084969 Thiohalomonadaceae 0.05 17 0 G 2034504 Sulfurivermis 0.05 17 17 S 1972068 Sulfurivermis fontis 0.04 15 0 O 118969 Legionellales 0.03 9 0 F 444 Legionellaceae 0.03 9 0 G 445 Legionella 0.02 8 0 S 446 Legionella pneumophila 0.02 8 7 S1 91891 Legionella pneumophila subsp. pneumophila 0.00 1 1 S2 272624 Legionella pneumophila subsp. pneumophila str. Philadelphia 1 0.00 1 1 S 450 Legionella longbeachae 0.02 6 4 F 118968 Coxiellaceae 0.01 2 0 G 254245 Aquicella 0.01 2 2 S 254247 Aquicella siphonis 0.04 13 0 O 3060226 Steroidobacterales 0.04 13 0 F 2689614 Steroidobacteraceae 0.04 13 0 G 469322 Steroidobacter 0.04 13 13 S 465721 Steroidobacter denitrificans 0.01 5 0 O 135618 Methylococcales 0.01 4 0 F 403 Methylococcaceae 0.01 3 0 G 3135206 Candidatus Methylocalor 0.01 3 3 S 3108543 Candidatus Methylocalor cossyra 0.00 1 1 G 416 Methylomonas 0.00 1 0 F 1486721 Methylothermaceae 0.00 1 1 G 1486720 Methylomarinovum 0.01 3 0 O 135615 Cardiobacteriales 0.01 3 0 F 868 Cardiobacteriaceae 0.01 2 0 G 2717 Cardiobacterium 0.01 2 0 G1 2648856 unclassified Cardiobacterium 0.01 2 2 S 2866573 Cardiobacterium sp. Marseille-Q4385 0.00 1 0 G 13275 Suttonella 0.00 1 0 G1 2908647 unclassified Suttonella 0.00 1 1 S 2908648 Suttonella sp. R2A3 0.01 2 0 O 1240482 Orbales 0.01 2 0 F 1240483 Orbaceae 0.01 2 0 G 2894762 Zophobihabitans 0.01 2 2 S 1635327 Zophobihabitans entericus 0.00 1 0 O 2975284 Candidatus Comchoanobacterales 0.00 1 0 F 2975285 Candidatus Comchoanobacteraceae 0.00 1 0 G 2975286 Candidatus Comchoanobacter 0.00 1 1 S 2919598 Candidatus Comchoanobacter bicostacola 1.63 566 21 C 28211 Alphaproteobacteria 0.71 247 0 O 204457 Sphingomonadales 0.65 225 4 F 41297 Sphingomonadaceae 0.61 212 131 G 165696 Novosphingobium 0.19 66 66 S 13688 Novosphingobium capsulatum 0.04 13 13 S 2728851 Novosphingobium olei 0.01 2 2 G1 2644732 unclassified Novosphingobium 0.02 6 6 G 13687 Sphingomonas 0.01 2 2 G 165695 Sphingobium 0.00 1 1 G 1234545 Parasphingopyxis 0.06 21 4 F 335929 Erythrobacteraceae 0.03 10 10 G 2800681 Aurantiacibacter 0.02 7 3 F1 2800788 Erythrobacter/Porphyrobacter group 0.01 2 0 G 1041 Erythrobacter 0.00 1 0 S 39960 Erythrobacter litoralis 0.00 1 1 S1 314225 Erythrobacter litoralis HTCC2594 0.00 1 0 G1 2633097 unclassified Erythrobacter 0.00 1 1 S 2653850 Erythrobacter sp. 3-20A1M 0.01 2 0 G 1111 Porphyrobacter 0.01 2 0 G1 2683265 unclassified Porphyrobacter 0.01 2 2 S 2003315 Porphyrobacter sp. CACIAM 03H1 0.00 1 0 F 2820280 Sphingosinicellaceae 0.00 1 1 G 1508451 Polymorphobacter 0.49 171 8 O 356 Hyphomicrobiales 0.22 75 0 F 118882 Brucellaceae 0.22 75 69 F1 2826938 Brucella/Ochrobactrum group 0.02 6 4 G 234 Brucella 0.00 1 0 S 29459 Brucella melitensis 0.00 1 0 S1 645169 Brucella melitensis bv. 2 0.00 1 1 S2 520465 Brucella melitensis bv. 2 str. 63/9 0.00 1 1 S 94625 Brucella intermedia 0.08 27 1 F 2813035 Parvibaculaceae 0.07 26 0 G 256616 Parvibaculum 0.07 26 0 S 256618 Parvibaculum lavamentivorans 0.07 26 26 S1 402881 Parvibaculum lavamentivorans DS-1 0.04 15 0 F 82115 Rhizobiaceae 0.02 8 0 F1 227292 Sinorhizobium/Ensifer group 0.02 8 0 G 28105 Sinorhizobium 0.02 8 0 S 382 Sinorhizobium meliloti 0.02 8 8 S1 1041157 Sinorhizobium meliloti WSM1022 0.02 7 5 F1 227290 Rhizobium/Agrobacterium group 0.00 1 0 G 357 Agrobacterium 0.00 1 0 G1 1183400 Agrobacterium tumefaciens complex 0.00 1 1 S 358 Agrobacterium tumefaciens 0.00 1 1 G 379 Rhizobium 0.04 13 0 F 335928 Xanthobacteraceae 0.02 8 0 G 204476 Labrys 0.02 8 0 G1 2688601 unclassified Labrys (in: a-proteobacteria) 0.02 8 8 S 2789216 Labrys sp. KNU-23 0.01 5 2 G 556257 Pseudolabrys 0.01 3 0 G1 2638514 unclassified Pseudolabrys 0.01 3 3 S 2562284 Pseudolabrys sp. FHR47 0.02 7 0 F 2843308 Pleomorphomonadaceae 0.02 7 0 G 261933 Pleomorphomonas 0.02 7 0 G1 442120 environmental samples 0.02 7 7 S 442121 uncultured Pleomorphomonas sp. 0.02 6 0 F 69277 Phyllobacteriaceae 0.01 3 0 G 68287 Mesorhizobium 0.01 3 3 S 2725666 Mesorhizobium terrae 0.01 3 0 G 2911176 Aquibium 0.01 3 3 S 1670800 Aquibium oceanicum 0.01 4 1 F 2831106 Devosiaceae 0.01 3 0 G 46913 Devosia 0.01 3 0 G1 196773 unclassified Devosia 0.01 3 3 S 1736675 Devosia sp. A16 0.01 3 2 F 119045 Methylobacteriaceae 0.00 1 0 G 407 Methylobacterium 0.00 1 1 G1 2615210 unclassified Methylobacterium 0.01 3 1 F 45401 Hyphomicrobiaceae 0.00 1 0 G 81 Hyphomicrobium 0.00 1 1 G1 2619925 unclassified Hyphomicrobium 0.00 1 0 G 1484898 Methyloceanibacter 0.00 1 0 G1 2617503 unclassified Methyloceanibacter 0.00 1 1 S 2170729 Methyloceanibacter sp. wino2 0.01 3 2 F 41294 Nitrobacteraceae 0.00 1 0 G 1073 Rhodopseudomonas 0.00 1 0 G1 2638247 unclassified Rhodopseudomonas 0.00 1 1 S 2991972 Rhodopseudomonas sp. P2A-2r 0.01 3 3 F 31993 Methylocystaceae 0.01 2 0 F 2831090 Blastochloridaceae 0.01 2 2 G 59282 Blastochloris 0.00 1 0 F 45404 Beijerinckiaceae 0.00 1 1 G 1156568 Methylovirgula 0.00 1 0 F 2821832 Stappiaceae 0.00 1 0 G 1406135 Breoghania 0.00 1 0 G1 2624130 unclassified Breoghania 0.00 1 1 S 2304600 Breoghania sp. L-A4 0.17 60 0 O 204441 Rhodospirillales 0.12 43 0 F 2844601 Stellaceae 0.12 43 0 G 93 Stella 0.12 43 43 S 94 Stella humosa 0.03 12 0 F 2690195 Elioraeaceae 0.03 12 0 G 457933 Elioraea 0.03 12 12 S 2843330 Elioraea tepida 0.01 4 1 F 433 Acetobacteraceae 0.01 3 0 G 512381 Acidisoma 0.01 3 0 G1 2634065 unclassified Acidisoma 0.01 3 3 S 3040935 Acidisoma sp. PAMC 29798 0.00 1 0 F 41295 Rhodospirillaceae 0.00 1 0 G 1263978 Candidatus Endolissoclinum 0.00 1 1 S 1263979 Candidatus Endolissoclinum faulkneri 0.05 18 0 O 2800060 Hyphomonadales 0.05 18 0 F 69657 Hyphomonadaceae 0.05 18 18 G 85 Hyphomonas 0.05 16 0 O 204458 Caulobacterales 0.05 16 0 F 76892 Caulobacteraceae 0.03 12 7 G 41275 Brevundimonas 0.01 5 0 G1 2622653 unclassified Brevundimonas 0.01 3 3 S 2560058 Brevundimonas sp. Bb-A 0.01 2 2 S 2591463 Brevundimonas sp. M20 0.01 2 0 G 20 Phenylobacterium 0.00 1 1 S 2201350 Phenylobacterium parvum 0.00 1 1 S 2823693 Phenylobacterium montanum 0.01 2 0 G 75 Caulobacter 0.00 1 1 S 88688 Caulobacter segnis 0.00 1 0 G1 2648921 unclassified Caulobacter 0.00 1 1 S 3016000 Caulobacter sp. NIBR1757 0.04 13 1 O 204455 Rhodobacterales 0.03 11 1 F 31989 Paracoccaceae 0.02 8 8 G 121820 Roseinatronobacter 0.00 1 1 G 265 Paracoccus 0.00 1 0 G 1434002 Falsirhodobacter 0.00 1 1 S 2692330 Falsirhodobacter algicola 0.00 1 1 F 2854170 Roseobacteraceae 0.03 9 0 O 2066490 Emcibacterales 0.03 9 0 F 2066491 Emcibacteraceae 0.03 9 0 G 2943291 Pseudemcibacter 0.03 9 9 S 2857064 Pseudemcibacter aquimaris 0.02 7 0 O 1921002 Holosporales 0.02 6 0 F 1777752 Candidatus Paracaedibacteraceae 0.02 6 0 G 3163645 Candidatus Bodocaedibacter 0.02 6 6 S 2741701 Candidatus Bodocaedibacter vickermanii 0.00 1 0 F 44746 Holosporaceae 0.00 1 0 G 2654634 Candidatus Hydrogenosomobacter 0.00 1 1 S 2558174 Candidatus Hydrogenosomobacter endosymbioticus 0.01 3 0 O 766 Rickettsiales 0.01 3 0 F 775 Rickettsiaceae 0.01 3 0 F1 33988 Rickettsieae 0.01 2 0 G 780 Rickettsia 0.01 2 0 G1 114277 spotted fever group 0.01 2 0 S 781 Rickettsia conorii 0.01 2 2 S1 369822 Rickettsia conorii subsp. raoultii 0.00 1 0 G 2601645 Candidatus Sneabacter 0.00 1 1 S 2601646 Candidatus Sneabacter namystus 0.00 1 0 O 2800059 Maricaulales 0.00 1 1 F 2800061 Maricaulaceae 1.19 413 122 C 28216 Betaproteobacteria 0.73 254 15 O 80840 Burkholderiales 0.32 112 2 F 80864 Comamonadaceae 0.31 108 106 G 80865 Delftia 0.00 1 1 S 180282 Delftia tsuruhatensis 0.00 1 1 S 558537 Delftia lacustris 0.00 1 0 G 2919468 Vandammella 0.00 1 1 S 2029117 Vandammella animalimorsus 0.00 1 0 G 283 Comamonas 0.00 1 1 S 2743470 Comamonas antarctica 0.26 89 3 F 119060 Burkholderiaceae 0.08 29 2 G 32008 Burkholderia 0.06 20 0 G1 111527 pseudomallei group 0.05 16 0 S 57975 Burkholderia thailandensis 0.05 16 16 S1 1249664 Burkholderia thailandensis 34 0.01 4 2 S 28450 Burkholderia pseudomallei 0.01 2 2 S1 1249468 Burkholderia pseudomallei NCTC 13178 0.01 5 0 G1 87882 Burkholderia cepacia complex 0.01 5 5 S 488447 Burkholderia contaminans 0.01 2 0 G1 2613784 unclassified Burkholderia 0.01 2 2 S 1494466 Burkholderia sp. FERM BP-3421 0.08 29 11 G 48736 Ralstonia 0.05 18 0 G1 3116862 Ralstonia solanacearum species complex 0.05 18 18 S 305 Ralstonia solanacearum 0.03 12 0 G 106589 Cupriavidus 0.03 12 12 S 164546 Cupriavidus taiwanensis 0.03 9 0 G 2038280 Robbsia 0.03 9 0 G1 2636574 unclassified Robbsia 0.03 9 9 S 3149231 Robbsia sp. KACC 23696 0.01 5 0 G 1822464 Paraburkholderia 0.01 5 5 S 2571748 Paraburkholderia acidisoli 0.01 2 0 G 47670 Lautropia 0.01 2 2 S 47671 Lautropia mirabilis 0.07 25 10 F 75682 Oxalobacteraceae 0.02 7 7 G 29580 Janthinobacterium 0.01 3 0 F1 2895353 Telluria group 0.01 3 1 G 149698 Massilia 0.01 2 2 S 2045208 Massilia violaceinigra 0.01 2 1 G 963 Herbaspirillum 0.00 1 1 S 863372 Herbaspirillum huttiense 0.01 2 0 G 401469 Undibacterium 0.01 2 2 G1 2630295 unclassified Undibacterium 0.00 1 0 G 1051898 Actimicrobium 0.00 1 0 G1 2624959 unclassified Actimicrobium 0.00 1 1 S 3048606 Actimicrobium sp. CCC2.4 0.02 7 3 F 2975441 Sphaerotilaceae 0.01 2 0 G 36862 Ideonella 0.01 2 2 S 36863 Ideonella dechloratans 0.00 1 0 G 34102 Sphaerotilus 0.00 1 1 S 2914710 Sphaerotilus microaerophilus 0.00 1 0 G 1114981 Piscinibacter 0.00 1 1 S 946333 Piscinibacter gummiphilus 0.02 6 0 F 506 Alcaligenaceae 0.01 3 0 G 517 Bordetella 0.00 1 1 S 519 Bordetella parapertussis 0.00 1 1 S 94624 Bordetella petrii 0.00 1 1 S 463014 Bordetella flabilis 0.01 3 0 G 1472344 Basilea 0.01 3 0 S 1472345 Basilea psittacipulmonis 0.01 3 3 S1 1072685 Basilea psittacipulmonis DSM 24701 0.04 15 0 C1 119066 Betaproteobacteria incertae sedis 0.03 12 0 G 1301080 Candidatus Nasuia 0.03 12 12 S 1160784 Candidatus Nasuia deltocephalinicola 0.01 3 0 G 1381133 Candidatus Profftella 0.01 3 3 S 2661583 Candidatus Profftella armatura (Diaphorina cf. continua) 0.04 14 0 O 206351 Neisseriales 0.03 10 5 F 481 Neisseriaceae 0.01 3 0 G 2593687 Aquella 0.01 3 3 S 2067065 Aquella oligotrophica 0.00 1 0 G 32257 Kingella 0.00 1 1 S 505 Kingella oralis 0.00 1 1 G 194195 Alysiella 0.01 3 3 F 2897177 Chitinibacteraceae 0.00 1 0 F 2897176 Aquaspirillaceae 0.00 1 0 G 168470 Laribacter 0.00 1 0 S 168471 Laribacter hongkongensis 0.00 1 1 S1 557598 Laribacter hongkongensis HLHK9 0.02 8 0 O 32003 Nitrosomonadales 0.02 8 0 F 32011 Methylophilaceae 0.02 7 0 G 359407 Methylotenera 0.02 7 0 S 359408 Methylotenera mobilis 0.02 7 7 S1 583345 Methylotenera mobilis JLW8 0.00 1 1 G 1679002 Candidatus Methylopumilus 0.02 6 0 C 1807140 Acidithiobacillia 0.02 6 0 O 225057 Acidithiobacillales 0.02 6 0 F 225058 Acidithiobacillaceae 0.02 6 6 G 119977 Acidithiobacillus 13.29 4613 10 D1 1783272 Terrabacteria group 12.43 4315 27 P 1239 Bacillota 12.24 4250 90 C 91061 Bacilli 10.36 3596 7 O 186826 Lactobacillales 10.03 3482 0 F 81852 Enterococcaceae 10.03 3481 1 G 1350 Enterococcus 9.97 3461 3461 S 1351 Enterococcus faecalis 0.04 15 15 S 1352 Enterococcus faecium 0.01 2 2 S 1353 Enterococcus gallinarum 0.01 2 2 S 1354 Enterococcus hirae 0.00 1 0 G 51668 Tetragenococcus 0.00 1 1 S 51669 Tetragenococcus halophilus 0.20 68 5 F 33958 Lactobacillaceae 0.04 13 0 G 2930384 Periweissella 0.04 13 13 S 2506420 Periweissella cryptocerci 0.03 12 5 G 46255 Weissella 0.01 4 4 S 137591 Weissella cibaria 0.01 2 2 S 1249 Weissella paramesenteroides 0.00 1 1 S 1583 Weissella confusa 0.02 6 6 G 1243 Leuconostoc 0.02 6 1 G 1578 Lactobacillus 0.01 3 0 S 1584 Lactobacillus delbrueckii 0.01 2 0 S1 1585 Lactobacillus delbrueckii subsp. bulgaricus 0.01 2 2 S2 321956 Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 0.00 1 1 S1 29397 Lactobacillus delbrueckii subsp. lactis 0.00 1 1 S 1579 Lactobacillus acidophilus 0.00 1 1 S 267818 Lactobacillus kefiranofaciens 0.02 6 0 G 2767842 Lactiplantibacillus 0.01 4 4 S 1590 Lactiplantibacillus plantarum 0.01 2 2 S 1589 Lactiplantibacillus pentosus 0.01 4 0 G 2767887 Ligilactobacillus 0.01 2 2 S 1605 Ligilactobacillus animalis 0.01 2 2 S 1624 Ligilactobacillus salivarius 0.01 4 1 G 2767881 Fructilactobacillus 0.01 3 3 S 1625 Fructilactobacillus sanfranciscensis 0.01 4 0 G 2759736 Lacticaseibacillus 0.01 3 3 S 1597 Lacticaseibacillus paracasei 0.00 1 1 S 3025672 Lacticaseibacillus pabuli 0.01 3 1 G 2742598 Limosilactobacillus 0.01 2 2 S 1598 Limosilactobacillus reuteri 0.01 2 0 G 2767886 Levilactobacillus 0.01 2 2 S 1580 Levilactobacillus brevis 0.00 1 0 G 2767874 Acetilactobacillus 0.00 1 1 S 1720083 Acetilactobacillus jinshanensis 0.00 1 1 G 2767893 Lentilactobacillus 0.00 1 1 G 2767877 Apilactobacillus 0.08 27 0 F 1300 Streptococcaceae 0.07 24 14 G 1301 Streptococcus 0.01 5 2 S 1308 Streptococcus thermophilus 0.01 3 3 S1 767463 Streptococcus thermophilus ND03 0.01 2 0 G1 671232 Streptococcus anginosus group 0.01 2 2 S 1328 Streptococcus anginosus 0.01 2 1 S 1313 Streptococcus pneumoniae 0.00 1 1 S1 869311 Streptococcus pneumoniae SPN032672 0.00 1 1 S 28037 Streptococcus mitis 0.01 3 0 G 1357 Lactococcus 0.01 3 3 S 1359 Lactococcus cremoris 0.02 7 1 F 186827 Aerococcaceae 0.01 3 3 G 1375 Aerococcus 0.01 3 0 G 2862144 Ruoffia 0.01 3 3 S 87458 Ruoffia tabacinasalis 0.01 5 0 F 186828 Carnobacteriaceae 0.01 4 4 G 29393 Dolosigranulum 0.00 1 0 G 82800 Desemzia 0.00 1 1 S 82801 Desemzia incerta 1.62 564 8 O 1385 Bacillales 0.97 336 0 F 90964 Staphylococcaceae 0.97 336 138 G 1279 Staphylococcus 0.49 171 168 S 1280 Staphylococcus aureus 0.01 3 3 S1 1229492 Staphylococcus aureus 08BA02176 0.01 5 3 S 1282 Staphylococcus epidermidis 0.01 2 2 S1 176280 Staphylococcus epidermidis ATCC 12228 0.01 5 5 S 1286 Staphylococcus simulans 0.01 5 5 S 70255 Staphylococcus condimenti 0.01 5 0 G1 2815305 Staphylococcus intermedius group 0.01 3 3 S 283734 Staphylococcus pseudintermedius 0.01 2 2 S 53344 Staphylococcus delphini 0.01 3 3 S 1290 Staphylococcus hominis 0.01 2 2 S 1283 Staphylococcus haemolyticus 0.00 1 1 S 985002 Staphylococcus argenteus 0.00 1 1 S 45972 Staphylococcus pasteuri 0.56 196 22 F 186817 Bacillaceae 0.28 98 8 G 1386 Bacillus 0.16 55 1 G1 653685 Bacillus subtilis group 0.13 44 0 G2 1938374 Bacillus amyloliquefaciens group 0.12 43 43 S 492670 Bacillus velezensis 0.00 1 1 S 1390 Bacillus amyloliquefaciens 0.03 9 8 S 1423 Bacillus subtilis 0.00 1 1 S1 86029 Bacillus subtilis subsp. natto 0.00 1 1 S 96241 Bacillus spizizenii 0.05 18 2 G1 86661 Bacillus cereus group 0.01 4 4 S 1428 Bacillus thuringiensis 0.01 4 0 G2 2750818 unclassified Bacillus cereus group 0.01 4 4 S 1892404 Bacillus sp. ABP14 0.01 3 3 S 1396 Bacillus cereus 0.01 3 3 S 1392 Bacillus anthracis 0.00 1 1 S 1405 Bacillus mycoides 0.00 1 1 S 64104 Bacillus pseudomycoides 0.04 13 0 G1 185979 unclassified Bacillus (in: firmicutes) 0.03 12 12 S 2841656 Bacillus sp. ZHX3 0.00 1 1 S 2709784 Bacillus sp. KH172YL63 0.01 4 0 G1 1792192 Bacillus altitudinis complex 0.01 4 4 S 293387 Bacillus altitudinis 0.04 15 15 G 1055323 Aeribacillus 0.03 10 9 G 2837504 Heyndrickxia 0.00 1 1 S 1398 Heyndrickxia coagulans 0.03 9 0 G 2005375 Alkalicoccus 0.03 9 9 S 1667239 Alkalicoccus halolimnae 0.02 8 0 G 400634 Lysinibacillus 0.01 5 5 S 2086577 Lysinibacillus timonensis 0.01 2 2 S 2590012 Lysinibacillus agricola 0.00 1 1 S 28031 Lysinibacillus fusiformis 0.02 7 0 G 175304 Lentibacillus 0.02 7 7 S 1472767 Lentibacillus amyloliquefaciens 0.02 7 5 G 2893057 Shouchella 0.01 2 2 S 79880 Shouchella clausii 0.02 6 0 G 2893056 Halalkalibacter 0.02 6 6 S 199441 Halalkalibacter krulwichiae 0.01 3 0 G 2837508 Rossellomorea 0.01 3 3 S 218284 Rossellomorea vietnamensis 0.01 2 0 G 84406 Virgibacillus 0.01 2 2 S 447199 Virgibacillus salarius 0.01 2 0 G 2893055 Halalkalibacterium (ex Joshi et al. 2022) 0.01 2 0 S 86665 Halalkalibacterium halodurans 0.01 2 2 S1 272558 Halalkalibacterium halodurans C-125 0.01 2 0 G 2800373 Priestia 0.00 1 1 S 1404 Priestia megaterium 0.00 1 1 S 412384 Priestia aryabhattai 0.00 1 0 G 2837506 Niallia 0.00 1 0 G1 2837522 unclassified Niallia 0.00 1 1 S 3082444 Niallia sp. XMNu-256 0.00 1 0 G 2837510 Siminovitchia 0.00 1 1 S 254758 Siminovitchia fortis 0.00 1 0 G 379065 Caldalkalibacillus 0.00 1 0 S 296745 Caldalkalibacillus thermarum 0.00 1 1 S1 986075 Caldalkalibacillus thermarum TA2.A1 0.00 1 0 G 129337 Geobacillus 0.00 1 1 S 1921421 Geobacillus genomosp. 3 0.00 1 0 G 2685905 Salicibibacter 0.00 1 1 S 2743001 Salicibibacter cibi 0.03 10 0 F 186820 Listeriaceae 0.03 10 1 G 1637 Listeria 0.02 8 0 S 1638 Listeria ivanovii 0.02 8 0 S1 202751 Listeria ivanovii subsp. ivanovii 0.02 8 8 S2 881621 Listeria ivanovii subsp. ivanovii PAM 55 0.00 1 1 S 1639 Listeria monocytogenes 0.03 10 0 F 186822 Paenibacillaceae 0.03 9 1 G 44249 Paenibacillus 0.01 3 1 G1 185978 unclassified Paenibacillus 0.01 2 2 S 715179 Paenibacillus sp. sptzw28 0.01 2 2 S 1406 Paenibacillus polymyxa 0.00 1 1 S 562959 Paenibacillus cellulositrophicus 0.00 1 1 S 1778678 Paenibacillus psychroresistens 0.00 1 1 S 61624 Paenibacillus mucilaginosus 0.00 1 0 G 329857 Cohnella 0.00 1 1 S 2507935 Cohnella abietis 0.01 2 0 F 186823 Alicyclobacillaceae 0.00 1 0 G 29330 Alicyclobacillus 0.00 1 1 S 2931921 Alicyclobacillus mengziensis 0.00 1 0 G 432330 Tumebacillus 0.00 1 1 S 1903704 Tumebacillus avium 0.00 1 0 F 186818 Planococcaceae 0.00 1 0 G 160795 Ureibacillus 0.00 1 1 G1 2638520 unclassified Ureibacillus 0.00 1 0 F 186824 Thermoactinomycetaceae 0.00 1 0 G 1677050 Novibacillus 0.00 1 1 S 1471761 Novibacillus thermophilus 0.10 34 1 C 186801 Clostridia 0.04 15 1 O 186802 Eubacteriales 0.01 5 0 F 31979 Clostridiaceae 0.01 5 0 G 1485 Clostridium 0.01 3 3 S 1502 Clostridium perfringens 0.00 1 1 S 36839 Clostridium felsineum 0.00 1 0 G1 2614128 unclassified Clostridium 0.00 1 1 S 2483110 Clostridium sp. JN-1 0.01 4 0 F 216572 Oscillospiraceae 0.01 2 0 G 1263 Ruminococcus 0.00 1 1 S 1161942 Ruminococcus champanellensis 0.00 1 1 S 2564099 Ruminococcus bovis 0.00 1 0 G 3048127 Thermocaproicibacter 0.00 1 1 S 2966552 Thermocaproicibacter melissae 0.00 1 0 G 459786 Oscillibacter 0.00 1 1 S 2763056 Oscillibacter hominis 0.01 3 0 F 186806 Eubacteriaceae 0.01 3 3 G 33951 Acetobacterium 0.00 1 0 F 31984 Heliobacteriaceae 0.00 1 0 G 79598 Heliorestis 0.00 1 1 S 356322 Heliorestis convoluta 0.00 1 0 F 3085642 Butyricicoccaceae 0.00 1 0 G 1928820 Intestinibacillus 0.00 1 0 G1 2635293 unclassified Intestinibacillus 0.00 1 1 S 3079303 Intestinibacillus sp. NTUH-41-i26 0.04 14 0 O 3085636 Lachnospirales 0.03 12 8 F 186803 Lachnospiraceae 0.01 2 0 G 1506553 Lachnoclostridium 0.01 2 2 S 1512 [Clostridium] symbiosum 0.00 1 0 G 1843210 Anaerocolumna 0.00 1 1 S 433286 Anaerocolumna cellulosilytica 0.00 1 0 G 2569097 Anaerobutyricum 0.00 1 1 S 39488 Anaerobutyricum hallii 0.01 2 0 F 3018741 Cellulosilyticaceae 0.01 2 2 G 698776 Cellulosilyticum 0.01 2 0 O 68295 Thermoanaerobacterales 0.01 2 0 F 543372 Thermoanaerobacterales Family IV. Incertae Sedis 0.01 2 0 G 252965 Mahella 0.01 2 0 S 252966 Mahella australiensis 0.01 2 2 S1 697281 Mahella australiensis 50-1 BON 0.00 1 0 O 53433 Halanaerobiales 0.00 1 0 F 53434 Halobacteroidaceae 0.00 1 0 G 42417 Halobacteroides 0.00 1 0 S 42422 Halobacteroides halobius 0.00 1 1 S1 748449 Halobacteroides halobius DSM 5150 0.00 1 0 O 3085656 Monoglobales 0.00 1 0 F 3085657 Monoglobaceae 0.00 1 0 G 2039302 Monoglobus 0.00 1 1 S 1981510 Monoglobus pectinilyticus 0.01 3 0 C 1737404 Tissierellia 0.01 3 0 O 1737405 Tissierellales 0.01 3 0 F 1570339 Peptoniphilaceae 0.01 2 1 G 165779 Anaerococcus 0.00 1 0 S 33034 Anaerococcus prevotii 0.00 1 1 S1 525919 Anaerococcus prevotii DSM 20548 0.00 1 0 G 31983 Helcococcus 0.00 1 1 S 72026 Helcococcus ovis 0.00 1 0 C 526524 Erysipelotrichia 0.00 1 0 O 526525 Erysipelotrichales 0.00 1 0 F 128827 Erysipelotrichaceae 0.00 1 0 G 174708 Allobaculum 0.00 1 1 S 2834459 Allobaculum mucilyticum 0.72 249 4 P 201174 Actinomycetota 0.70 243 25 C 1760 Actinomycetes 0.21 74 0 O 85007 Mycobacteriales 0.15 51 0 F 1653 Corynebacteriaceae 0.15 51 37 G 1716 Corynebacterium 0.01 5 0 S 1717 Corynebacterium diphtheriae 0.01 5 5 S1 257309 Corynebacterium diphtheriae NCTC 13129 0.00 1 1 S 1862358 Corynebacterium choanae 0.00 1 0 G1 2624378 unclassified Corynebacterium 0.00 1 1 S 2599641 Corynebacterium sp. sy039 0.00 1 1 S 2709394 Corynebacterium lizhenjunii 0.00 1 1 S 679663 Corynebacterium canis 0.00 1 0 S 203263 Corynebacterium aquilae 0.00 1 1 S1 1431546 Corynebacterium aquilae DSM 44791 0.00 1 0 S 575200 Corynebacterium maris 0.00 1 1 S1 1224163 Corynebacterium maris DSM 45190 0.00 1 1 S 108486 Corynebacterium falsenii 0.00 1 1 S 1719 Corynebacterium pseudotuberculosis 0.00 1 0 S 1718 Corynebacterium glutamicum 0.00 1 1 S1 1079988 Corynebacterium glutamicum ATCC 14067 0.05 19 0 F 85025 Nocardiaceae 0.05 19 9 G 1827 Rhodococcus 0.01 5 5 S 37919 Rhodococcus opacus 0.01 4 0 G1 2840174 Rhodococcus erythropolis group 0.01 4 4 S 1833 Rhodococcus erythropolis 0.00 1 1 S 38310 Rhodococcus coprophilus 0.01 4 0 F 1762 Mycobacteriaceae 0.01 4 0 G 1763 Mycobacterium 0.01 4 0 G1 77643 Mycobacterium tuberculosis complex 0.01 4 4 S 1773 Mycobacterium tuberculosis 0.21 74 7 O 85009 Propionibacteriales 0.18 64 5 F 31957 Propionibacteriaceae 0.14 50 2 G 1912216 Cutibacterium 0.14 48 48 S 1747 Cutibacterium acnes 0.02 8 4 G 29404 Microlunatus 0.01 3 3 S 546874 Microlunatus sagamiharensis 0.00 1 0 S 29405 Microlunatus phosphovorus 0.00 1 1 S1 1032480 Microlunatus phosphovorus NM-1 0.00 1 0 G 1912215 Acidipropionibacterium 0.00 1 1 S 1749 Acidipropionibacterium jensenii 0.01 3 0 F 85015 Nocardioidaceae 0.01 3 1 G 1839 Nocardioides 0.01 2 0 G1 2615069 unclassified Nocardioides 0.00 1 1 S 2976000 Nocardioides sp. NBC_00368 0.00 1 1 S 2763008 Nocardioides sp. zg-1228 0.16 55 0 O 85011 Kitasatosporales 0.16 55 7 F 2062 Streptomycetaceae 0.14 48 0 G 1883 Streptomyces 0.12 41 27 G1 2593676 unclassified Streptomyces 0.01 3 3 S 2750025 Streptomyces sp. CB00271 0.01 3 3 S 2594460 Streptomyces sp. S1A1-8 0.01 2 2 S 2099584 Streptomyces sp. ICC4 0.00 1 1 S 2903645 Streptomyces sp. NBC_00310 0.00 1 1 S 2975728 Streptomyces sp. NBC_00370 0.00 1 1 S 2933779 Streptomyces sp. WAC00303 0.00 1 1 S 2684469 Streptomyces sp. SCUT-3 0.00 1 1 S 2730915 Streptomyces sp. Z423-1 0.00 1 1 S 3111774 Streptomyces sp. CGMCC 4.1772 0.01 3 0 G1 629295 Streptomyces griseus group 0.01 3 0 G2 1482561 Streptomyces anulatus subgroup 0.01 3 3 S 1892 Streptomyces anulatus 0.00 1 0 G1 1477431 Streptomyces albidoflavus group 0.00 1 1 S 1886 Streptomyces albidoflavus 0.00 1 1 S 83656 Streptomyces tsukubensis 0.00 1 0 G1 2838335 Streptomyces aurantiacus group 0.00 1 1 S 188770 Streptomyces koyangensis 0.00 1 1 S 67304 Streptomyces griseorubiginosus 0.02 6 0 O 2037 Actinomycetales 0.02 6 3 F 2049 Actinomycetaceae 0.01 2 2 G 2529408 Schaalia 0.00 1 1 G 1522056 Flaviflexus 0.01 3 0 O 85004 Bifidobacteriales 0.01 3 0 F 31953 Bifidobacteriaceae 0.01 3 1 G 1678 Bifidobacterium 0.01 2 0 S 216816 Bifidobacterium longum 0.01 2 2 S1 1682 Bifidobacterium longum subsp. infantis 0.01 3 0 O 85006 Micrococcales 0.00 1 0 F 2805591 Tropherymataceae 0.00 1 0 G 2038 Tropheryma 0.00 1 1 S 2039 Tropheryma whipplei 0.00 1 0 F 85023 Microbacteriaceae 0.00 1 1 G 33877 Agromyces 0.00 1 0 F 1268 Micrococcaceae 0.00 1 0 G 1742989 Glutamicibacter 0.00 1 1 S 37929 Glutamicibacter nicotianae 0.00 1 0 O 85012 Streptosporangiales 0.00 1 1 F 2012 Thermomonosporaceae 0.00 1 0 O 1643682 Geodermatophilales 0.00 1 0 F 85030 Geodermatophilaceae 0.00 1 0 G 1860 Geodermatophilus 0.00 1 0 S 1861 Geodermatophilus obscurus 0.00 1 1 S1 526225 Geodermatophilus obscurus DSM 43160 0.00 1 0 O 1217098 Jiangellales 0.00 1 0 F 1217100 Jiangellaceae 0.00 1 1 G 281472 Jiangella 0.00 1 0 C 84992 Acidimicrobiia 0.00 1 0 O 84993 Acidimicrobiales 0.00 1 0 F 633392 Iamiaceae 0.00 1 0 G 2789775 Actinomarinicola 0.00 1 1 S 2789776 Actinomarinicola tropica 0.00 1 0 C 84995 Rubrobacteria 0.00 1 0 O 84996 Rubrobacterales 0.00 1 0 F 84997 Rubrobacteraceae 0.00 1 1 G 42255 Rubrobacter 0.03 12 0 D2 1798711 Cyanobacteriota/Melainabacteria group 0.03 12 0 P 1117 Cyanobacteriota 0.03 12 2 C 3028117 Cyanophyceae 0.01 5 0 C1 1301283 Oscillatoriophycideae 0.01 5 0 O 1150 Oscillatoriales 0.01 5 0 F 2934961 Sirenicapillariaceae 0.01 5 0 G 2596745 Limnospira 0.01 5 0 S 147322 Limnospira indica 0.01 5 5 S1 2760438 Limnospira indica BM01 0.00 1 1 O 1161 Nostocales 0.00 1 0 O 1890424 Synechococcales 0.00 1 0 F 2881426 Prochlorococcaceae 0.00 1 0 G 167375 Cyanobium 0.00 1 0 G1 2627006 unclassified Cyanobium 0.00 1 1 S 1851505 Cyanobium sp. NIES-981 0.00 1 0 O 3039985 Nodosilineales 0.00 1 0 F 3039986 Nodosilineaceae 0.00 1 0 G 1120752 Nodosilinea 0.00 1 0 G1 2628167 unclassified Nodosilinea 0.00 1 1 S 3037479 Nodosilinea sp. E11 0.00 1 0 O 3079744 Acaryochloridales 0.00 1 0 F 1890429 Acaryochloridaceae 0.00 1 0 G 155977 Acaryochloris 0.00 1 0 G1 2631661 unclassified Acaryochloris 0.00 1 1 S 2740837 Acaryochloris sp. 'Moss Beach' 0.00 1 0 O 3079757 Gomontiellales 0.00 1 0 F 1890431 Chamaesiphonaceae 0.00 1 0 G 217161 Chamaesiphon 0.00 1 0 S 1173032 Chamaesiphon minutus 0.00 1 1 S1 1173020 Chamaesiphon minutus PCC 6605 0.03 10 0 P 200795 Chloroflexota 0.02 7 1 C 32061 Chloroflexia 0.02 6 0 O 32064 Chloroflexales 0.02 6 0 O1 1508594 Chloroflexineae 0.02 6 0 F 1106 Chloroflexaceae 0.02 6 0 G 1107 Chloroflexus 0.02 6 0 S 152260 Chloroflexus aggregans 0.02 6 6 S1 326427 Chloroflexus aggregans DSM 9485 0.01 3 0 C 292625 Anaerolineae 0.01 3 0 O 292629 Anaerolineales 0.01 3 1 F 292628 Anaerolineaceae 0.01 2 0 G 1649478 Pelolinea 0.01 2 2 S 913107 Pelolinea submarina 0.03 10 5 P 544448 Mycoplasmatota 0.01 4 0 O 2790996 Mycoplasmoidales 0.01 3 0 F 2790998 Mycoplasmoidaceae 0.01 2 2 G 2129 Ureaplasma 0.00 1 0 G 2995234 Mycoplasmoides 0.00 1 1 S 92758 Mycoplasmoides fastidiosum 0.00 1 0 F 2895623 Metamycoplasmataceae 0.00 1 0 G 2895509 Metamycoplasma 0.00 1 1 S 2098 Metamycoplasma hominis 0.00 1 0 C 31969 Mollicutes 0.00 1 0 O 2085 Mycoplasmatales 0.00 1 0 F 2092 Mycoplasmataceae 0.00 1 0 G 2093 Mycoplasma 0.00 1 0 G1 2683645 unclassified Mycoplasma 0.00 1 1 S 2967302 Mycoplasma sp. 1018B 0.02 7 0 P 67819 Armatimonadota 0.01 4 0 C 1663419 Fimbriimonadia 0.01 4 0 O 1663425 Fimbriimonadales 0.01 4 0 F 1663426 Fimbriimonadaceae 0.01 4 0 G 1005038 Fimbriimonas 0.01 4 0 S 1005039 Fimbriimonas ginsengisoli 0.01 4 4 S1 661478 Fimbriimonas ginsengisoli Gsoil 348 0.01 2 0 C 1077257 Chthonomonadia 0.01 2 0 O 1077263 Chthonomonadales 0.01 2 0 F 1077264 Chthonomonadaceae 0.01 2 0 G 1077265 Chthonomonas 0.01 2 0 S 454171 Chthonomonas calidirosea 0.01 2 2 S1 1303518 Chthonomonas calidirosea T49 0.00 1 0 C 1042312 Armatimonadia 0.00 1 0 O 2494207 Capsulimonadales 0.00 1 0 F 2494208 Capsulimonadaceae 0.00 1 0 G 2494209 Capsulimonas 0.00 1 1 S 2219043 Capsulimonas corticalis 4.18 1453 0 D1 1783270 FCB group 4.17 1447 0 D2 68336 Bacteroidota/Chlorobiota group 4.15 1440 0 P 976 Bacteroidota 4.04 1404 0 C 768503 Cytophagia 4.04 1404 0 O 768507 Cytophagales 4.04 1404 0 F 89373 Cytophagaceae 4.02 1395 0 G 107 Spirosoma 4.01 1394 1394 S 2666025 Spirosoma endbachense 0.00 1 1 S 1211326 Spirosoma aerolatum 0.03 9 0 G 978 Cytophaga 0.03 9 0 S 985 Cytophaga hutchinsonii 0.03 9 9 S1 269798 Cytophaga hutchinsonii ATCC 33406 0.03 12 0 C 200643 Bacteroidia 0.02 7 0 O 171549 Bacteroidales 0.01 4 1 F 171552 Prevotellaceae 0.01 3 1 G 2974251 Segatella 0.01 2 2 S 165179 Segatella copri 0.01 2 0 F 815 Bacteroidaceae 0.01 2 0 G 816 Bacteroides 0.00 1 1 S 818 Bacteroides thetaiotaomicron 0.00 1 1 S 817 Bacteroides fragilis 0.00 1 0 F 2005525 Tannerellaceae 0.00 1 0 G 375288 Parabacteroides 0.00 1 1 S 823 Parabacteroides distasonis 0.01 5 0 O 1970189 Marinilabiliales 0.01 5 0 F 558415 Marinilabiliaceae 0.01 5 0 G 3129724 Xiashengella 0.01 5 5 S 2949635 Xiashengella succiniciproducens 0.03 11 0 C 117743 Flavobacteriia 0.03 11 0 O 200644 Flavobacteriales 0.03 10 0 F 49546 Flavobacteriaceae 0.02 8 0 G 286104 Winogradskyella 0.02 8 8 S 2686077 Winogradskyella forsetii 0.00 1 0 G 104267 Tenacibaculum 0.00 1 0 G1 2635139 unclassified Tenacibaculum 0.00 1 1 S 2745565 Tenacibaculum sp. AHE14PA 0.00 1 0 G 326319 Dokdonia 0.00 1 0 G1 2615033 unclassified Dokdonia 0.00 1 1 S 983548 Dokdonia sp. 4H-3-7-5 0.00 1 0 F 2762318 Weeksellaceae 0.00 1 0 F1 2782232 Chryseobacterium group 0.00 1 1 G 59732 Chryseobacterium 0.02 8 0 C 1853228 Chitinophagia 0.02 8 0 O 1853229 Chitinophagales 0.02 8 1 F 563835 Chitinophagaceae 0.01 5 0 G 504481 Sediminibacterium 0.01 5 0 G1 2635961 unclassified Sediminibacterium 0.01 5 5 S 575378 Sediminibacterium sp. TEGAF015 0.00 1 0 G 649460 Filimonas 0.00 1 1 S 477680 Filimonas lacunae 0.00 1 0 G 1649506 Thermoflavifilum 0.00 1 0 G1 3099314 unclassified Thermoflavifilum 0.00 1 1 S 1968839 Thermoflavifilum sp. 0.01 5 0 C 117747 Sphingobacteriia 0.01 5 0 O 200666 Sphingobacteriales 0.01 5 0 F 84566 Sphingobacteriaceae 0.01 4 1 G 28453 Sphingobacterium 0.00 1 1 S 258 Sphingobacterium spiritivorum 0.00 1 1 S 561061 Sphingobacterium psychroaquaticum 0.00 1 1 S 662858 Sphingobacterium bambusae 0.00 1 0 G 376469 Olivibacter 0.00 1 0 G1 2632301 unclassified Olivibacter 0.00 1 1 S 2592345 Olivibacter sp. LS-1 0.02 7 0 P 1853220 Rhodothermota 0.02 7 0 C 1853222 Rhodothermia 0.02 7 3 O 1853224 Rhodothermales 0.01 4 0 F 563843 Rhodothermaceae 0.01 4 0 G 2893090 Rhodocaloribacter 0.01 4 4 S 2558931 Rhodocaloribacter litoris 0.02 6 0 P 456828 Candidatus Cloacimonadota 0.02 6 0 C 3039863 Candidatus Cloacimonadia 0.02 6 0 O 3039864 Candidatus Cloacimonadales 0.02 6 0 F 3039865 Candidatus Cloacimonadaceae 0.02 6 0 G 456826 Candidatus Cloacimonas 0.02 6 0 S 456827 Candidatus Cloacimonas acidaminovorans 0.02 6 6 S1 459349 Candidatus Cloacimonas acidaminovorans str. Evry 0.35 123 0 P 508458 Synergistota 0.35 123 0 C 649775 Synergistia 0.35 123 0 O 649776 Synergistales 0.35 123 0 F 649777 Synergistaceae 0.35 123 0 G 81411 Aminomonas 0.35 123 0 S 81412 Aminomonas paucivorans 0.35 123 123 S1 584708 Aminomonas paucivorans DSM 12260 0.09 31 9 P 200940 Thermodesulfobacteriota 0.03 10 0 C 3031449 Desulfovibrionia 0.03 10 0 O 213115 Desulfovibrionales 0.03 10 0 F 194924 Desulfovibrionaceae 0.02 8 8 G 2035811 Pseudodesulfovibrio 0.01 2 0 G 3126915 Taurinivorans 0.01 2 2 S 2787751 Taurinivorans muris 0.02 6 0 C 3031651 Desulfuromonadia 0.02 6 0 O 69541 Desulfuromonadales 0.02 6 0 F 213421 Desulfuromonadaceae 0.02 6 6 G 890 Desulfuromonas 0.01 3 0 C 3031451 Desulfobulbia 0.01 3 0 O 3024411 Desulfobulbales 0.01 3 0 F 213121 Desulfobulbaceae 0.01 3 0 G 893 Desulfobulbus 0.01 3 3 S 1986146 Desulfobulbus oralis 0.01 2 0 C 67799 Thermodesulfobacteria 0.01 2 2 O 188710 Thermodesulfobacteriales 0.00 1 0 C 3024408 Syntrophobacteria 0.00 1 0 O 213462 Syntrophobacterales 0.00 1 0 F 213465 Syntrophobacteraceae 0.00 1 0 G 29526 Syntrophobacter 0.00 1 0 S 119484 Syntrophobacter fumaroxidans 0.00 1 1 S1 335543 Syntrophobacter fumaroxidans MPOB 0.07 24 0 P 29547 Campylobacterota 0.07 24 0 C 3031852 Epsilonproteobacteria 0.07 24 0 O 213849 Campylobacterales 0.05 19 0 F 72293 Helicobacteraceae 0.05 19 0 G 209 Helicobacter 0.05 17 17 S 213 Helicobacter cinaedi 0.01 2 2 S 210 Helicobacter pylori 0.01 5 0 F 72294 Campylobacteraceae 0.01 5 0 G 194 Campylobacter 0.01 3 0 S 522485 Campylobacter avium 0.01 3 3 S1 522484 Campylobacter avium LMG 24591 0.01 2 2 S 449520 Campylobacter canadensis 0.05 18 0 D1 2323 Bacteria incertae sedis 0.05 18 0 D2 1783234 Bacteria candidate phyla 0.05 18 9 P 95818 Candidatus Saccharibacteria 0.03 9 0 C 2093818 Candidatus Saccharimonadia 0.02 7 0 O 2093825 Candidatus Saccharimonadales 0.02 7 0 F 2171986 Candidatus Saccharimonadaceae 0.02 7 0 G 1331051 Candidatus Saccharimonas 0.02 7 7 S 1332188 Candidatus Saccharimonas aalborgensis 0.01 2 0 O 2093819 Candidatus Nanosynbacterales 0.01 2 0 F 2093822 Candidatus Nanosynbacteraceae 0.01 2 1 G 2093823 Candidatus Nanosynbacter 0.00 1 1 S 2093824 Candidatus Nanosynbacter lyticus 0.05 18 0 D1 1783257 PVC group 0.04 13 0 P 203682 Planctomycetota 0.04 13 1 C 203683 Planctomycetia 0.03 9 0 O 2691354 Pirellulales 0.03 9 1 F 2691357 Pirellulaceae 0.02 7 0 G 1579505 Rubripirellula 0.02 7 7 S 1930273 Rubripirellula lacrimiformis 0.00 1 0 G 265487 Blastopirellula 0.00 1 0 G1 2647022 unclassified Blastopirellula 0.00 1 1 S 2943192 Blastopirellula sp. J2-11 0.01 2 0 O 112 Planctomycetales 0.01 2 0 F 126 Planctomycetaceae 0.00 1 0 G 118 Planctomyces 0.00 1 0 G1 2648843 unclassified Planctomyces 0.00 1 1 S 1632864 Planctomyces sp. SH-PL14 0.00 1 0 G 2714737 Alienimonas 0.00 1 1 S 2527989 Alienimonas californiensis 0.00 1 0 O 2691355 Gemmatales 0.00 1 1 F 1914233 Gemmataceae 0.01 2 0 P 74201 Verrucomicrobiota 0.00 1 0 P1 326457 Verrucomicrobiota incertae sedis 0.00 1 0 G 1541670 Methylacidimicrobium 0.00 1 1 G1 2730358 unclassified Methylacidimicrobium 0.00 1 0 C 414999 Opitutia 0.00 1 1 O 415001 Puniceicoccales 0.01 2 0 P 134625 Kiritimatiellota 0.01 2 0 C 2907184 Tichowtungiia 0.01 2 0 O 2907185 Tichowtungiales 0.01 2 0 F 2907186 Tichowtungiaceae 0.01 2 0 G 2907187 Tichowtungia 0.01 2 2 S 2697043 Tichowtungia aerotolerans 0.00 1 0 P 204428 Chlamydiota 0.00 1 0 C 204429 Chlamydiia 0.00 1 0 O 1963360 Parachlamydiales 0.00 1 0 F 92713 Parachlamydiaceae 0.00 1 1 G 282132 Candidatus Protochlamydia 0.03 9 0 P 57723 Acidobacteriota 0.02 8 0 C 533205 Holophagae 0.02 8 0 O 574975 Holophagales 0.02 8 0 F 574976 Holophagaceae 0.02 6 6 G 44675 Geothrix 0.00 1 0 G 35838 Holophaga 0.00 1 0 G1 89282 environmental samples 0.00 1 1 S 188475 uncultured Holophaga sp. 0.00 1 0 G 3074468 Mesoterricola 0.00 1 1 S 2927980 Mesoterricola sediminis 0.00 1 0 C 204432 Terriglobia 0.00 1 0 O 204433 Terriglobales 0.00 1 0 F 204434 Acidobacteriaceae 0.00 1 0 G 940557 Granulicella 0.00 1 0 S 940614 Granulicella mallensis 0.00 1 1 S1 682795 Granulicella mallensis MP5ACTX8 0.02 8 0 P 203691 Spirochaetota 0.02 8 0 C 203692 Spirochaetia 0.02 8 0 O 136 Spirochaetales 0.02 7 0 F 2845253 Treponemataceae 0.02 7 0 G 157 Treponema 0.01 4 4 S 162 Treponema phagedenis 0.01 3 3 S 165 Treponema saccharophilum 0.00 1 0 F 1643685 Borreliaceae 0.00 1 0 G 64895 Borreliella 0.00 1 1 S 100177 Borreliella lusitaniae 0.01 3 0 P 2818505 Myxococcota 0.01 3 0 P1 3031711 Polyangia 0.01 3 1 O 3031712 Polyangiales 0.00 1 1 F 49 Polyangiaceae 0.00 1 0 F 1055686 Sandaracinaceae 0.00 1 0 G 1055688 Sandaracinus 0.00 1 1 S 927083 Sandaracinus amylolyticus 0.01 3 0 P 2138240 Coprothermobacterota 0.01 3 0 C 2138243 Coprothermobacteria 0.01 3 0 O 2138246 Coprothermobacterales 0.01 3 0 F 2138247 Coprothermobacteraceae 0.01 3 0 G 68335 Coprothermobacter 0.01 3 0 S 35786 Coprothermobacter proteolyticus 0.01 3 3 S1 309798 Coprothermobacter proteolyticus DSM 5265 0.01 2 0 P 32066 Fusobacteriota 0.01 2 0 C 203490 Fusobacteriia 0.01 2 0 O 203491 Fusobacteriales 0.01 2 0 F 1129771 Leptotrichiaceae 0.00 1 0 G 32067 Leptotrichia 0.00 1 0 G1 2633022 unclassified Leptotrichia 0.00 1 1 S 712357 Leptotrichia sp. oral taxon 212 0.00 1 0 G 168808 Sneathia 0.00 1 1 S 187101 Sneathia vaginalis 0.00 1 0 P 200930 Deferribacterota 0.00 1 0 C 68337 Deferribacteres 0.00 1 0 O 191393 Deferribacterales 0.00 1 0 F 2945021 Calditerrivibrionaceae 0.00 1 0 G 545865 Calditerrivibrio 0.00 1 0 S 477976 Calditerrivibrio nitroreducens 0.00 1 1 S1 768670 Calditerrivibrio nitroreducens DSM 19672